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Fricke GM, Letendre KA, Moses ME, Cannon JL. Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search. PLoS Comput Biol 2016; 12:e1004818. [PMID: 26990103 PMCID: PMC4798282 DOI: 10.1371/journal.pcbi.1004818] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Accepted: 02/17/2016] [Indexed: 11/19/2022] Open
Abstract
Effective search strategies have evolved in many biological systems, including the immune system. T cells are key effectors of the immune response, required for clearance of pathogenic infection. T cell activation requires that T cells encounter antigen-bearing dendritic cells within lymph nodes, thus, T cell search patterns within lymph nodes may be a crucial determinant of how quickly a T cell immune response can be initiated. Previous work suggests that T cell motion in the lymph node is similar to a Brownian random walk, however, no detailed analysis has definitively shown whether T cell movement is consistent with Brownian motion. Here, we provide a precise description of T cell motility in lymph nodes and a computational model that demonstrates how motility impacts T cell search efficiency. We find that both Brownian and Lévy walks fail to capture the complexity of T cell motion. Instead, T cell movement is better described as a correlated random walk with a heavy-tailed distribution of step lengths. Using computer simulations, we identify three distinct factors that contribute to increasing T cell search efficiency: 1) a lognormal distribution of step lengths, 2) motion that is directionally persistent over short time scales, and 3) heterogeneity in movement patterns. Furthermore, we show that T cells move differently in specific frequently visited locations that we call "hotspots" within lymph nodes, suggesting that T cells change their movement in response to the lymph node environment. Our results show that like foraging animals, T cells adapt to environmental cues, suggesting that adaption is a fundamental feature of biological search.
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Affiliation(s)
- G. Matthew Fricke
- Department of Computer Science, The University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Kenneth A. Letendre
- Department of Biology, The University of New Mexico, Albuquerque, New Mexico, United States of America
| | - Melanie E. Moses
- Department of Computer Science, The University of New Mexico, Albuquerque, New Mexico, United States of America
- Department of Biology, The University of New Mexico, Albuquerque, New Mexico, United States of America
- External Faculty, Santa Fe Institute, Santa Fe, New Mexico, United States of America
| | - Judy L. Cannon
- Department of Molecular Genetics and Microbiology, The University of New Mexico School of Medicine, Albuquerque, New Mexico, United States of America
- Department of Pathology, The University of New Mexico School of Medicine, Albuquerque, New Mexico, United States of America
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Doran C, Stumpe MC, Sendova-Franks A, Franks NR. Exploration adjustment by ant colonies. ROYAL SOCIETY OPEN SCIENCE 2016; 3:150533. [PMID: 26909180 PMCID: PMC4736935 DOI: 10.1098/rsos.150533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Accepted: 12/17/2015] [Indexed: 06/05/2023]
Abstract
How do animals in groups organize their work? Division of labour, i.e. the process by which individuals within a group choose which tasks to perform, has been extensively studied in social insects. Variability among individuals within a colony seems to underpin both the decision over which tasks to perform and the amount of effort to invest in a task. Studies have focused mainly on discrete tasks, i.e. tasks with a recognizable end. Here, we study the distribution of effort in nest seeking, in the absence of new nest sites. Hence, this task is open-ended and individuals have to decide when to stop searching, even though the task has not been completed. We show that collective search effort declines when colonies inhabit better homes, as a consequence of a reduction in the number of bouts (exploratory events). Furthermore, we show an increase in bout exploration time and a decrease in bout instantaneous speed for colonies inhabiting better homes. The effect of treatment on bout effort is very small; however, we suggest that the organization of work performed within nest searching is achieved both by a process of self-selection of the most hard-working ants and individual effort adjustment.
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Affiliation(s)
- Carolina Doran
- School of Biological Sciences, Bristol Life Sciences Building, 24 Tyndall Avenue, Bristol BS8 1TQ, UK
- Champalimaud Neuroscience Programme, Champalimaud Centre for the Unknown, Avenida Brasília, Lisbon 1400-038, Portugal
| | | | - Ana Sendova-Franks
- Department of Engineering Design and Mathematics, UWE Bristol, Coldharbour Lane, Bristol BS16 1QY, UK
| | - Nigel R. Franks
- School of Biological Sciences, Bristol Life Sciences Building, 24 Tyndall Avenue, Bristol BS8 1TQ, UK
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Gordon DM. From division of labor to the collective behavior of social insects. Behav Ecol Sociobiol 2015; 70:1101-1108. [PMID: 27397966 PMCID: PMC4917577 DOI: 10.1007/s00265-015-2045-3] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 11/11/2015] [Accepted: 11/18/2015] [Indexed: 12/03/2022]
Abstract
‘Division of labor’ is a misleading way to describe the organization of tasks in social insect colonies, because there is little evidence for persistent individual specialization in task. Instead, task allocation in social insects occurs through distributed processes whose advantages, such as resilience, differ from those of division of labor, which are mostly based on learning. The use of the phrase ‘division of labor’ persists for historical reasons, and tends to focus attention on differences among individuals in internal attributes. This focus distracts from the main questions of interest in current research, which require an understanding of how individuals interact with each other and their environments. These questions include how colony behavior is regulated, how the regulation of colony behavior develops over the lifetime of a colony, what are the sources of variation among colonies in the regulation of behavior, and how the collective regulation of colony behavior evolves.
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Affiliation(s)
- Deborah M Gordon
- Department of Biology, Stanford University, Stanford, CA 94305-5020 USA
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Navlakha S, Barth AL, Bar-Joseph Z. Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks. PLoS Comput Biol 2015. [PMID: 26217933 PMCID: PMC4517947 DOI: 10.1371/journal.pcbi.1004347] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Robust, efficient, and low-cost networks are advantageous in both biological and engineered systems. During neural network development in the brain, synapses are massively over-produced and then pruned-back over time. This strategy is not commonly used when designing engineered networks, since adding connections that will soon be removed is considered wasteful. Here, we show that for large distributed routing networks, network function is markedly enhanced by hyper-connectivity followed by aggressive pruning and that the global rate of pruning, a developmental parameter not previously studied by experimentalists, plays a critical role in optimizing network structure. We first used high-throughput image analysis techniques to quantify the rate of pruning in the mammalian neocortex across a broad developmental time window and found that the rate is decreasing over time. Based on these results, we analyzed a model of computational routing networks and show using both theoretical analysis and simulations that decreasing rates lead to more robust and efficient networks compared to other rates. We also present an application of this strategy to improve the distributed design of airline networks. Thus, inspiration from neural network formation suggests effective ways to design distributed networks across several domains.
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Affiliation(s)
- Saket Navlakha
- Center for Integrative Biology, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Alison L. Barth
- Department of Biological Sciences, Center for the Neural Basis of Cognition, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
- * E-mail: (ALB); (ZBJ)
| | - Ziv Bar-Joseph
- Lane Center for Computational Biology, Machine Learning Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
- * E-mail: (ALB); (ZBJ)
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55
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Abstract
Many group-living animals construct transportation networks of trails, galleries and burrows by modifying the environment to facilitate faster, safer or more efficient movement. Animal transportation networks can have direct influences on the fitness of individuals, whereas the shape and structure of transportation networks can influence community dynamics by facilitating contacts between different individuals and species. In this review, we discuss three key areas in the study of animal transportation networks: the topological properties of networks, network morphogenesis and growth, and the behaviour of network users. We present a brief primer on elements of network theory, and then discuss the different ways in which animal groups deal with the fundamental trade-off between the competing network properties of travel efficiency, robustness and infrastructure cost. We consider how the behaviour of network users can impact network efficiency, and call for studies that integrate both network topology and user behaviour. We finish with a prospectus for future research.
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Affiliation(s)
- Andrea Perna
- Paris Interdisciplinary Energy Research Institute, Paris Diderot University, 75013 Paris, France Department of Mathematics, Uppsala University, Uppsala, Sweden
| | - Tanya Latty
- Behaviour and Genetics of Social Insects Laboratory, School of Biological Sciences A12, University of Sydney, New South Wales 2006, Australia Centre for Mathematical Biology, University of Sydney, New South Wales 2006, Australia
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Esponda F, Gordon DM. Distributed nestmate recognition in ants. Proc Biol Sci 2015; 282:20142838. [PMID: 25833853 PMCID: PMC4426612 DOI: 10.1098/rspb.2014.2838] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Accepted: 03/05/2015] [Indexed: 11/12/2022] Open
Abstract
We propose a distributed model of nestmate recognition, analogous to the one used by the vertebrate immune system, in which colony response results from the diverse reactions of many ants. The model describes how individual behaviour produces colony response to non-nestmates. No single ant knows the odour identity of the colony. Instead, colony identity is defined collectively by all the ants in the colony. Each ant responds to the odour of other ants by reference to its own unique decision boundary, which is a result of its experience of encounters with other ants. Each ant thus recognizes a particular set of chemical profiles as being those of non-nestmates. This model predicts, as experimental results have shown, that the outcome of behavioural assays is likely to be variable, that it depends on the number of ants tested, that response to non-nestmates changes over time and that it changes in response to the experience of individual ants. A distributed system allows a colony to identify non-nestmates without requiring that all individuals have the same complete information and helps to facilitate the tracking of changes in cuticular hydrocarbon profiles, because only a subset of ants must respond to provide an adequate response.
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Affiliation(s)
- Fernando Esponda
- Department of Computer Science, Instituto Tecnológico Autónomo de México, México D.F. 01080, Mexico
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Countryman SM, Stumpe MC, Crow SP, Adler FR, Greene MJ, Vonshak M, Gordon DM. Collective search by ants in microgravity. Front Ecol Evol 2015. [DOI: 10.3389/fevo.2015.00025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Lihoreau M, Buhl C, Charleston MA, Sword GA, Raubenheimer D, Simpson SJ. Nutritional ecology beyond the individual: a conceptual framework for integrating nutrition and social interactions. Ecol Lett 2015; 18:273-86. [PMID: 25586099 PMCID: PMC4342766 DOI: 10.1111/ele.12406] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2014] [Accepted: 11/30/2014] [Indexed: 11/30/2022]
Abstract
Over recent years, modelling approaches from nutritional ecology (known as Nutritional Geometry) have been increasingly used to describe how animals and some other organisms select foods and eat them in appropriate amounts in order to maintain a balanced nutritional state maximising fitness. These nutritional strategies profoundly affect the physiology, behaviour and performance of individuals, which in turn impact their social interactions within groups and societies. Here, we present a conceptual framework to study the role of nutrition as a major ecological factor influencing the development and maintenance of social life. We first illustrate some of the mechanisms by which nutritional differences among individuals mediate social interactions in a broad range of species and ecological contexts. We then explain how studying individual- and collective-level nutrition in a common conceptual framework derived from Nutritional Geometry can bring new fundamental insights into the mechanisms and evolution of social interactions, using a combination of simulation models and manipulative experiments.
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Affiliation(s)
- Mathieu Lihoreau
- Charles Perkins CentreThe University of SydneySydneyNSW2006Australia
- School of Biological SciencesThe University of SydneySydneyNSW2006Australia
| | - Camille Buhl
- Charles Perkins CentreThe University of SydneySydneyNSW2006Australia
- School of Biological SciencesThe University of SydneySydneyNSW2006Australia
- Present address:
School of Agriculture, Food and WineThe University of AdelaideAdelaideSA5005Australia
| | | | - Gregory A. Sword
- Department of EntomologyInterdisciplinary Faculty of Ecology and Evolutionary BiologyTexas A&M UniversityCollege StationTX77843‐2475USA
| | - David Raubenheimer
- Charles Perkins CentreThe University of SydneySydneyNSW2006Australia
- School of Biological SciencesThe University of SydneySydneyNSW2006Australia
- Faculty of Veterinary ScienceThe University of SydneySydneyNSW2006Australia
| | - Stephen J. Simpson
- Charles Perkins CentreThe University of SydneySydneyNSW2006Australia
- School of Biological SciencesThe University of SydneySydneyNSW2006Australia
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