Density functional theory study of the structure-antioxidant activity of polyphenolic deoxybenzoins

A Comparative Study on the in vitro Antioxidant and Antimicrobial Potentials of Three Endemic Ononis L. Species from Turkey

Objectives

In this study, the antioxidant capacity, antimicrobial activity and phenolic contents of aerial parts and roots extracts of three endemic Ononis L. (Leguminosae) species (O. sessilifolia Bornm., O. basiadnata Hub. & Mor., O. macrosperma Hub. & Mor.) were investigated for the first time.

Materials and Methods

The phenolic contents of the extracts [water and ethanol (EtOH)] and fractions [dichloromethane, EtOAc and n-butanol] were determined using Folin-Ciocalteu's phenol reagent. Also, their antioxidant capacities were studied using qualitative DPPH˙ (1,1-diphenyl-2-picrylhdrazyl radical) and TBA assays. The antimicrobial activity of these extracts and fractions compared with standard antibiotics were studied using disc diffusion assays against various Gram-positive and Gram-negative bacteria and fungi.

Results

The total phenolic contents of the water extracts were found to range between 14.78-80.33 mg/g, and the EtOH extracts ranged from 67.19-145.33 mg/g. EtOAc fractions of the three species were rich in terms of total phenolic contents when compared with other extracts (242.56-620.89 mg/g). The most significant results in the TBA assays were obtained in EtOH extracts of O. macrosperma (IC₅₀=0.13±0.17 µg/mL), O. sessilifolia (IC₅₀=1.41±0.58 µg/mL) and root (IC₅₀=1.96±0.39 µg/mL).

Conclusion

EtOAc fractions rich in phenolic content were also found to be the most effective in antioxidant activity assays. Although all water extracts had no antimicrobial activity, EtOH extracts and n-butanol fractions showed generally moderate activity against bacteria. Some EtOAc fractions except for O. sessilifolia showed less activity against Escherichia coli, Staphylococcus aureus, MRSA and Candida albicans.

The surrounding environments on the structure and antioxidative activity of luteolin

Luteolin is an excellent antioxidant found in a wide variety of natural foods, such as honey and pollen. In this work, the effect of the surrounding environments on the structure and antioxidative activity of luteolin was carried out using density functional theory (DFT) calculation. The studied environments are gas, benzene, chloroform, pyridine, acetonitrile, ethanol, DMSO, and water. The structure of the luteolin monomer in different environments was optimized. The hydrogen-bond was especially focused, and the antioxidative capacity of luteolin was analyzed from the thermodynamic aspect. It is found that: (1) hydrogen atom transfer (HAT) is the most thermodynamically favorable mechanism in the gas, benzene, and chloroform phases, while sequential proton loss electron transfer (SPLET) is more favorable than HAT and single electron transfer followed by proton transfer (SET-PT) in pyridine, acetonitrile, ethanol, DMSO, and water phases. (2) The 4'-OH group could more strongly participate in the free radical scavenging process of luteolin than other OH groups, while the 5-OH group is the least favored one in the studied environments. (3) The antioxidative capacity of luteolin is strongest in pyridine.

Structure-function relationships of hydroxyl radical scavenging and chromium-VI reducing cysteine-tripeptides derived from rye secalin

The aim of the study was to determine the activity of four rye peptides and molecular descriptors responsible for the detected biological function. The activity was determined using hydroxyl radical scavenging and chromium-VI (Cr(VI) reducing assays while the density functional theory (DFT) was used for molecular descriptors (i.e. structure-activity relationships). It was found that at pH 7.4, peptide CQV had the highest Cr(VI) reducing activity (76%) followed by QCA (30.8%) while other peptides had less than 25% reduction. All tested peptides were less active at pH 3.0 and this was due to poor spatial proximity of thiol and amine on the glutamine side chain. In the hydroxyl radical scavenging assay, CQV had the highest activity with 28.9 ± 1.3% inhibition of the formation of HO radicals compared to 19.0-13.6% for other peptides. Cysteine at the N-terminal was important for both the reduction of chromium (pH 7.4) and the HO activity because S-H bond energies at that position were lower based on DFT calculations.

The Substitution Effect on Reaction Enthalpies of Antioxidant Mechanisms of Juglone and Its Derivatives in Gas and Solution Phase: DFT Study

We examined the structure-reaction enthalpies-antioxidant activity relationship of the molecule library built around juglone and its derivatives at B3LYP/6-31+G(d,p) level. Three major antioxidant mechanisms (hydrogen atom transfer (HAT), single electron transfer-proton transfer (SET-PT), and sequential proton loss electron transfer (SPLET)) have been investigated in five solvents and in the gas phase. The delocalization of the unpaired electrons in the radicals or cation radicals has been explored by the natural bond orbital analysis and the interpretation of spin density maps. The results obtained have proven that the HAT mechanism is the thermodynamically preferred mechanism in the gas phase. But, in the solution phase, the SPLET mechanism has been shown to be more predominant than HAT. The reactivity order of compounds towards selected reactive oxygen species has also been studied.

Antioxidant Activity of Quercetin and Its Glucosides from Propolis: A Theoretical Study

Among the multiple components of propolis, flavonoids contribute greatly to the antioxidant activities of propolis. Flavonoids mainly exist in the form of sugar-conjugated derivatives. Quercetin glycosides represent the predominant flavonoid fraction in propolis. In this work, density functional theory (DFT) calculations were applied to analyze the antioxidative properties of quercetin and its glucosides in the gas and in the liquid phase (ethanol, water). Three main antioxidant mechanisms, hydrogen atom transfer (HAT), single electron transfer followed by proton transfer (SET-PT) and sequential proton loss electron transfer (SPLET) were used to analyze the antioxidative capacity of the investigated compounds. Solvent effects dominantly affect SET-PT and SPLET. Thus, the thermodynamically preferred mechanism can be altered. HAT and SPLET are the thermodynamically dominant mechanisms in gas and solvent phases, respectively. Therefore, in the gas phase, the sequence of the antioxidative capacity is similar with the bond dissociation enthalpy values: quercetin > quercetin-5-O-glucoside > quercetin-7-O-glucoside > quercetin-3-O-glucoside > quercetin-3'-O-glucoside > quercetin-4'-O-glucoside. While, in the solvent phases, the sequence is similar with the proton affinity values: quercetin-4'-O-glucoside > quercetin-5-O-glucoside > quercetin > quercetin-3-O-glucoside > quercetin-7-O-glucoside > quercetin-3'-O-glucoside. OH groups in B-ring and C-ring contribute mainly to the antioxidative activities of quercetin and glucosides compared with A-ring.

Sequential Proton Loss Electron Transfer in Deactivation of Iron(IV) Binding Protein by Tyrosine Based Food Components

The iron(IV) binding protein ferrylmyoglobin, MbFe(IV)═O, was found to be reduced by tyrosine based food components in aqueous solution through a sequential proton loss electron transfer reaction mechanism without binding to the protein as confirmed by isothermal titration calorimetry. Dopamine and epinephrine are the most efficient food components reducing ferrylmyoglobin to oxymyoglobin, MbFe(II)O₂, and metmyoglobin, MbFe(III), as revealed by multivariate curve resolution alternating least-squares with second order rate constants of 33.6 ± 2.3 L/mol/s (ΔH^⧧ of 19 ± 5 kJ/mol, ΔS^⧧ of -136 ± 18 J/mol K) and 228.9 ± 13.3 L/mol/s (ΔH^⧧ of 110 ± 7 kJ/mol, ΔS^⧧ of 131 ± 25 J/mol K), respectively, at pH 7.4 and 25 °C. The other tyrosine based food components were found to reduce ferrylmyoglobin to metmyoglobin with similar reduction rates at pH 7.4 and 25 °C. These reduction reactions were enhanced by protonation of ferrylmyoglobin and facilitated proton transfer at acidic conditions. Enthalpy-entropy compensation effects were observed for the activation parameters (ΔH^⧧ and ΔS^⧧), indicating the common reaction mechanism. Moreover, principal component analysis combined with heat map were performed to understand the relationship between density functional theory calculated molecular descriptors and kinetic data, which was further modeled by partial least squares for quantitative structure-activity relationship analysis. In addition, a three tyrosine residue containing protein, lysozyme, was also found to be able to reduce ferrylmyoglobin with a second order rate constant of 66 ± 28 L/mol/s as determined by a competitive kinetic method.

Theoretical studies on the antioxidant activity of pinobanksin and its ester derivatives: Effects of the chain length and solvent

The effects of the ester group and solvent on the structure and antioxidant activity of pinobanksin were carried out using DFT calculation. First, the properties of the intramolecular hydrogen-bonds in the investigated compounds were studied. Second, the antioxidant capacities of the investigated compounds were analyzed by HAT, SET-PT and SPLET mechanisms from thermodynamic point. The conclusions are: (1) HAT mechanism is most favorable in the gas and CCl₄ phases, while SPLET mechanism is more favored in the CH₃CN and H₂O phases. In the CHCl₃ phase, the thermodynamically preferred mechanism is HAT for the 3-OH and 5-OH groups. While, HAT and SPLET mechanisms may run simultaneously for the 7-OH group. (2) Replacing the 3-OH group by ester group with different alkyl chains does not change much of the antioxidant activity of pinobanksin. (3) Besides, the 7-OH group contributes mainly to the antioxidant activities of the investigated compounds.

Phenolic Melatonin-Related Compounds: Their Role as Chemical Protectors against Oxidative Stress

There is currently no doubt about the serious threat that oxidative stress (OS) poses to human health. Therefore, a crucial strategy to maintain a good health status is to identify molecules capable of offering protection against OS through chemical routes. Based on the known efficiency of the phenolic and melatonin (MLT) families of compounds as antioxidants, it is logical to assume that phenolic MLT-related compounds should be (at least) equally efficient. Unfortunately, they have been less investigated than phenols, MLT and its non-phenolic metabolites in this context. The evidence reviewed here strongly suggests that MLT phenolic derivatives can act as both primary and secondary antioxidants, exerting their protection through diverse chemical routes. They all seem to be better free radical scavengers than MLT and Trolox, while some of them also surpass ascorbic acid and resveratrol. However, there are still many aspects that deserve further investigations for this kind of compounds.

Fisetin Protects DNA Against Oxidative Damage and Its Possible Mechanism

PURPOSE

The paper tries to assess the protective effect of fisetin against •OH-induced DNA damage, then to investigate the possible mechanism.

METHODS

The protective effect was evaluated based on the content of malondialdehyde (MDA). The possible mechanism was analyzed using various antioxidant methods in vitro, including •OH scavenging (deoxyribose degradation), •O2 (-) scavenging (pyrogallol autoxidation), DPPH• scavenging, ABTS•(+) scavenging, and Cu(2+)-reducing power assays.

RESULTS

Fisetin increased dose-dependently its protective percentages against •OH-induced DNA damage (IC50 value =1535.00±29.60 µM). It also increased its radical-scavenging percentages in a dose-dependent manner in various antioxidants assays. Its IC50 values in •OH scavenging, •O2(-) scavenging, DPPH• scavenging, ABTS•(+) scavenging, and Cu(2+)-reducing power assays, were 47.41±4.50 µM, 34.05±0.87 µM, 9.69±0.53 µM, 2.43±0.14 µM, and 1.49±0.16 µM, respectively.

CONCLUSION

Fisetin can effectively protect DNA against •OH-induced oxidative damage possibly via reactive oxygen species (ROS) scavenging approach, which is assumed to be hydrogen atom (H•) and/or single electron (e) donation (HAT/SET) pathways. In the HAT pathway, the 3',4'-dihydroxyl moiety in B ring of fisetin is thought to play an important role, because it can be ultimately oxidized to a stable ortho-benzoquinone form.

Structure-thermodynamics-antioxidant activity relationships of selected natural phenolic acids and derivatives: an experimental and theoretical evaluation

Phenolic acids and derivatives have potential biological functions, however, little is known about the structure-activity relationships and the underlying action mechanisms of these phenolic acids to date. Herein we investigate the structure-thermodynamics-antioxidant relationships of 20 natural phenolic acids and derivatives using DPPH^• scavenging assay, density functional theory calculations at the B3LYP/6-311++G(d,p) levels of theory, and quantitative structure-activity relationship (QSAR) modeling. Three main working mechanisms (HAT, SETPT and SPLET) are explored in four micro-environments (gas-phase, benzene, water and ethanol). Computed thermodynamics parameters (BDE, IP, PDE, PA and ETE) are compared with the experimental radical scavenging activities against DPPH^•. Available theoretical and experimental investigations have demonstrated that the extended delocalization and intra-molecular hydrogen bonds are the two main contributions to the stability of the radicals. The C = O or C = C in COOH, COOR, C = CCOOH and C = CCOOR groups, and orthodiphenolic functionalities are shown to favorably stabilize the specific radical species to enhance the radical scavenging activities, while the presence of the single OH in the ortho position of the COOH group disfavors the activities. HAT is the thermodynamically preferred mechanism in the gas phase and benzene, whereas SPLET in water and ethanol. Furthermore, our QSAR models robustly represent the structure-activity relationships of these explored compounds in polar media.

Theoretical study on the structural and antioxidant properties of some recently synthesised 2,4,5-trimethoxy chalcones

The free radical scavenging activity of a series of 2,4,5-trimethoxy chalcones has been computationally explored using the density functional theory (DFT) method. Three potential working mechanisms, hydrogen atom transfer (HAT), stepwise electron transfer proton transfer (SET-PT) and sequential proton loss electron transfer (SPLET) have been investigated. The physiochemical parameters including O-H bond dissociation enthalpy (BDE), ionisation potential (IP), proton dissociation enthalpy (PDE), proton affinity (PA) and electron transfer enthalpy (ETE) have been calculated in gas phase and solvents. The order of antioxidant efficiencies predicted theoretically in this work is in good agreement with that reported by experimental results. The results obtained demonstrate that HAT would be the most favourable mechanism in the gas and benzene phases, whereas the SPLET mechanism is the thermodynamically preferred pathway in polar media. In addition, the importance of the A-ring on the radical scavenging capabilities of chalcones was also confirmed.

Theoretical studies on the structure and property of alkylated dipenylamine antioxidants

Diarylamines ( Ar 2 NH ) are generally used as antioxidants to inhibit or retard the auto-oxidation degradation of lubricating oil by trapping ROO• radicals. In the present study, 20 kinds of 4,4′-disubstituted diphenylamine compounds were investigated through density functional theory (DFT) calculations. The results indicate that the N – H bond dissociation enthalpy (BDE) linearly correlates its one-electron oxidation potential, the difference in Mulliken atomic charge on the two atoms of N – H bond, the reaction rate constant of hydrogen transfer from Ar 2 NH to peroxy radical, and the chemical hardness of the resulted Ar 2 N • radical, respectively. The substitution of alkyl groups (electron-donating groups) decreases the N – H BDE, one-electron oxidation potential and the reaction rate constant, while that of significant electron-withdrawing groups such as - NO 2 and - COOCH 3 increases these three parameters. The electron-donating groups such as alkyls could improve the antioxidation performance of 4,4′-disubstitued diphenylamines whereas electron-withdrawing groups have the contrary effect. In addition, the frontier molecular orbital of Ar 2 NH has been also analyzed.