Diagnosis of soil contamination using microbiological indices: A review on heavy metal pollution

Influence of biochar remediation on Eisenia fetida in Pb-contaminated soils

In this study, the remediation influence of maize straw biochar on earthworms (Eisenia fetida) in contaminated soils (with Pb at 0, 300, 700, and 1000 mg kg^-1) amended with different amounts of biochar (0%, 1%, 3%, and 5%) was investigated. The results showed that applying biochar to metal-polluted soils effectively reduced the mobility of Pb, promoting the transformation of Pb from exchangeable (EXC) and bound-to-carbonate (Carb) fractions to Fe/Mn oxide (FeMnOx), organic bound (ORG) and residual (RES) fractions. Consequently, a reduction in the mortality and weight loss of earthworms was also achieved by biochar. The accumulation amount of Pb in earthworms steadily increased with exposure time, and with the increasing dosage of biochar, the accumulated Pb decreased by 50.8-78.0% (300 mg kg^-1), 30.9-67.3% (700 mg kg^-1), and 17.4-55.1% (1000 mg kg^-1), which was significantly positively correlated with the mortality of earthworms. Simultaneously, the application of biochar increased the soil pH (0.05-0.23 units), cation exchange capacity (CEC) (0.26-4.54 cmol kg^-1), and content of organic matter (0.54-11.66%). There were higher soil enzyme activities (including sucrase activity, urease activity, and alkaline phosphatase activity) in the treatments with a biochar addition of 3%. Through remediation, Proteobacteria (50.82%), Actinobacteriota (32.37%), Firmicutes (4.83%) and Bacteroidota (1.88%) were the most important phyla in the microbiota communities. Furthermore, soil pH value and leaching toxicity concentration showed the most striking effects on earthworms. Therefore, the influence of earthworms must be taken into account in the remediation of Pb-contaminated soil with biochar.

Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses

Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.

Microbial biosurfactants: a review of recent environmental applications

Microbial biosurfactants are low-molecular-weight surface-active compounds of high industrial interest owing to their chemical properties and stability under several environmental conditions. The chemistry of a biosurfactant and its production cost are defined by the selection of the producer microorganism, type of substrate, and purification strategy. Recently, biosurfactants have been applied to solve or contribute to solving some environmental problems, with this being their main field of application. The most referenced studies are based on the bioremediation of contaminated soils with recalcitrant pollutants, such as hydrocarbons or heavy metals. In the case of heavy metals, biosurfactants function as chelating agents owing to their binding capacity. However, the mechanism by which biosurfactants typically act in an environmental field is focused on their ability to reduce the surface tension, thus facilitating the emulsification and solubilization of certain pollutants (in-situ biostimulation and/or bioaugmentation). Moreover, despite the low toxicity of biosurfactants, they can also act as biocidal agents at certain doses, mainly at higher concentrations than their critical micellar concentration. More recently, biosurfactant production using alternative substrates, such as several types of organic waste and solid-state fermentation, has increased its applicability and research interest in a circular economy context. In this review, the most recent research publications on the use of biosurfactants in environmental applications as an alternative to conventional chemical surfactants are summarized and analyzed. Novel strategies using biosurfactants as agricultural and biocidal agents are also presented in this paper.

Transfer of Potentially Toxic Elements in the Soil-Plant System in Magnesite Mining and Processing Areas

Mining activities, ore concentrations, and transport processes generate large amounts of pollutants, including hazardous elements, which are released into the environment. This work presents the results of experimental research aimed at evaluating the environmental risks of soil and plant contamination in two magnesite mining and processing areas in the Slovak Republic, and assesses the phytoremediation potential of dominant plant species. Eleven potentially toxic elements in the soil were investigated using X-ray fluorescence spectrometry (Cd, Pb, Cr, Zn, Cu, As, Ni, Mn, Mg, Fe) and atomic absorption spectrometry (Hg). In plants, potentially toxic elements were investigated using inductively coupled plasma mass spectrometry (Cu, As, Cd, Pb) and inductively coupled plasma atomic emission spectrometry (Cr, Zn, Mn, Mg). Selected soil parameters (pH, redox potential, and soil organic matter) were also investigated. Soil contamination was evaluated using environmental indices (geoaccumulation index—Igeo, enrichment factor—EF, contamination factor—Cf, degree of contamination—Cd). The phytoremediation potential of plants was evaluated using the bioconcentration factor (BCF) and the translocation factor (TF). The soil reaction in the studied areas indicated a strong alkalization of the soil. The soils in Jelšava-Lubeník were significantly contaminated with Cr, As, Mn, and Mg. The most significant enrichment based on the average values of EF was found to be in the order of Cd > Mg > Zn > Cu > As > Cr > Ni > Pb > Fe > Hg > Mn. The observed values of Cf and Cd indicated a high degree of soil contamination. In Košice, the soils were found to be significantly contaminated with Cr, Mn, Mg, and Ni. The most significant enrichment was found in the order of Cd > Mn > Ni > Pb > Zn > Mg > Cu > As > Fe > Cr > Hg. Very high Cf was found for Pb and Cr. The results of correlation and hierarchical cluster analyses suggest a similar origin of pollutants caused by significant anthropogenic interventions due to magnesite mining and processing. The investigated dominant plant species, Phragmites australis, Agrostis stolonifera, Elytrigia repens, and Taraxacum officinale are able to accumulate high concentrations of the monitored potentially toxic elements without more serious load or damage. The results of BCF and TF confirmed that P. australis and T. officinale appeared to be suitable accumulators in the phytoextraction process. In the case of E. repens and A. stolonifera it was confirmed that they accumulate and immobilize high concentrations of potentially toxic elements, especially in the roots, establishing the suitability of their use in phytostabilization processes.

Chitosan-modified biochar: Preparation, modifications, mechanisms and applications

The chitosan-modified biochar composite, as a carbohydrate polymer, has received increasing attention and becomes a research hotspot. It is a promising impurity adsorption material, which has potential application value in the agricultural environment fields such as soil improvement and sewage purification. The composite can combine the advantages of biochar with chitosan, and the resulting composite usually exhibits a great improvement in its surface functional groups, adsorption sites, stability, and adsorption properties. In addition, compared to other adsorbents, the composite truly achieves the concept of "waste control by waste". In this paper, the preparation method, composite classification, adsorption mechanism, and models of biochar modified by chitosan are introduced, meanwhile, we also review and summarize their effects on the decontamination of wastewater and soil. In addition to common heavy metal ions, we also review the adsorption and removal of some other organic/inorganic pollutants, including (1) drug residues; (2) dyes; (3) phosphates; (4) radionuclides; (5) perfluorochemicals, etc. Moreover, challenges and prospects for the composite are presented and further studies are called for the chitosan-biochar composite. We believe that the composite will lead to further achievements in the field of environmental remediation.

Silicon-based additive on heavy metal remediation in soils: Toxicological effects, remediation techniques, and perspectives

Chemical fertilizer is gaining increasing attention and has been the center of much research which indicating complex beneficial and harmful effects. Chemical fertilizer might cause some environmental hazards to the biosphere, especially in the agricultural ecosystem. The application of silicon (Si) fertilizer in agriculture has been proved to be able to create good economic and environmental benefits. Si is the second most abundant earth crust element. Si fertilizer improves soil quality and alleviates biotic and abiotic crop stress. It is of great significance to understand the function of Si fertilizer in agricultural utilization and environmental remediation. This paper reviews the Si-based fertilizer in farmland use and summarizes prior research relevant with characterization, soil quality improvement, and pollution remediation effects. Its use in agriculture enhances plant silicon uptake, mediates plant salt and drought stress and remediates heavy metals such as Al, As, Cd, Cu, Zn and Cr. This article also summarizes the detoxification mechanism of silicon and its effects on plant physiological activity such as photosynthesis and transpiration. Fertilizer materials and crop fertilizer management were also considered. Foliar spraying is an effective method to improve crop growth and yield and reduce biotic or abiotic stress. Silicon nanoparticle material provides potential with great potential and prospects. More investigation and research are prospected to better understand how silicon impacts the environment and whether it is a beneficial additive.

Batch and continuous adsorption of Cu(II) and Zn(II) ions from aqueous solution on bi-functionalized sugarcane-based biosorbent

A new one-pot synthesis method optimized by a 2³ experimental design was developed to prepare a biosorbent, sugarcane bagasse cellulose succinate pyromellitate (SBSPy), for the removal of Cu(II) and Zn(II) from single-component aqueous solutions, in batch and continuous modes. The bi-functionalization of the biosorbent with ligands of different chemical structures increased its selectivity, improving its performance for removing pollutants from contaminated water. The succinate moiety favored Cu(II) adsorption, while the pyromellitate moiety favored Zn(II) adsorption. Sugarcane bagasse (SB) and SBSPy were characterized using several techniques. Analysis by ¹³C Multi-CP SS NMR and FTIR revealed the best order of addition of each anhydride that maximized the chemical modification of SB. The maximum adsorption capacities of SBSPy for Cu(II) and Zn(II), in batch mode, were 1.19 and 0.95 mmol g^-1, respectively. Homogeneous surface diffusion, intraparticle diffusion, and Boyd models were used to determine the steps involved in the adsorption process. Isothermal titration calorimetry was used to assess changes in enthalpy of adsorption as a function of SBSPy surface coverage. Fixed-bed column adsorption of Cu(II) and Zn(II) was performed in three cycles, showing that SBSPy has potential to be used in water treatment. Breakthrough curves were well fitted by the Thomas and Bohart-Adams models.

Urbanization influences the distribution, enrichment, and ecological health risk of heavy metals in croplands

The contamination of urban soils with heavy elements due to the rapid development of urbanization and urban services has become a major environmental and human health challenge. This study provides insight into the urbanization controls on combined pollution severity and health risk potential of heavy metals in corn-cultivated urban versus non-urban soils. A multifaceted assessment was conducted using enrichment factor (EF), ecological risk (ER), bioconcentration factor (BCF), transmission factor (TF), hazard index (HI), and carcinogenic risk (CR). The results indicate a significant increase in the concentration of all metals in urban farmlands. When compared to the non-urban soils, EF implies a significant increase of all metals in the urban soil, downgrading this index from minimal enrichment (EF < 2) in the control soils to moderate enrichment (2 ≤ EF < 5) in the urban soils. Likewise, the average ER value showed an increase in the urban soils than in the control soils in the order of Fluvisols (66.6%) > Regosols (66.1%) > Cambisols (59.8%) > Calcisols (47%). The BCF and TF values for different elements decreased in the order of Cd (0.41-0.92) > Cu (0.1-0.23) > Zn (0.1-0.18) > Ni (0.01-0.03) > Pb (0.005-0.011) and Zn (0.75-0.94) > Cu (0.72-0.85) > Pb (0.09-0.63) > Cd (0.17-0.22) > Ni (0.01-0.21), respectively, which indicates that certain metals were not mobilized to the extent that they had been accumulated in the plant roots. The total carcinogenic risk was ranged from 5.88E-05 to 1.17E-04 for children and from 1.17E-04 to 2.30E-04 for adults, which implies a greater associated health risk for children.

Improved phytoremediation of heavy metal contaminated soils by Miscanthus floridulus under a varied rhizosphere ecological characteristic

Miscanthus floridulus is a plant with high biomass and heavy metal tolerance, which is a good candidate for phytoremediation. It is essential to explore how to improve its remediation ability, especially the rhizosphere ecological characteristics which are significant for phytoremediation efficiency. Therefore, the heavy metals accumulation of M. floridulus, rhizosphere soil physicochemical properties, enzyme activities, and bacterial community of different distances from the tailing were measured, focusing on the relationship between phytoremediation ability and rhizosphere ecological characteristics. The results show that the stronger the phytoremediation ability is, the better is the soil environment, and the higher the coverage with plants. Soil rhizosphere environment and the phytoremediation ability are shaped by heavy metals. Rhizosphere microecology may regulate phytoremediation by improving soil nutrients and enzyme activities, alleviating heavy metal toxicity, changing rhizosphere microbial community structure, increasing beneficial microbial abundance, promoting heavy metals accumulation by plants. This study not only clarified the relationship between rhizosphere ecological factors, but also elucidated the phytoremediation regulatory mechanism. Some of microbial taxa might developed as biological bioinoculants, providing the possibility to promote the growth of plants with ecological restoration ability and improve the phytoremediation efficiency.

Ni-Fe/Reduced Graphene Oxide Nanocomposites for Hexavalent Chromium Reduction in an Aqueous Environment

We designed and synthesized a novel high efficiency Cr(VI) removal material using reduced graphene oxide (RGO) as a support with high specific surface area and a mixture of Fe and Ni nanoparticles (NPs) as a catalytic reducing agent. Such a design enables the composite particle to be integrated with three functions of adsorption, catalysis, and reduction, where RGO could enhance Cr(VI) adsorption, while Fe/Ni NPs increase the catalytic reducing efficiency. The application of a microchip mixer guaranteed a better mixing of GO and subsequent decoration of Fe and Ni NPs on RGO. Cr(VI) removal experiments with various materials are performed, and the results demonstrated that the Ni-Fe/RGO achieved an adsorption capacity of 150.45 mg/g at pH = 7 and 197.43 mg/g at pH = 5 for Cr(VI), which is higher than those of other reported materials at a pH of ∼7. To the best of our knowledge, this is the first example of Ni-Fe/RGO for efficient Cr(VI) removal by using the synergistic effects of increased adsorption, catalysis-assisted reduction, and enhanced mixing effect of a microchip mixer. This work also provides us with a simple and low-cost method for the fabrication of an effective Cr(VI) removal material.

Predicting the thresholds of metals with limited toxicity data with invertebrates in standard soils using quantitative ion character-activity relationships (QICAR)

Terrestrial invertebrates are often used as indicator organisms in ecological risk assessments. However, determining the risk of metals to invertebrates is laborious and time-consuming due to the lengthy testing and ethical approval procedures. In this study, a review of the literature was conducted to provide toxicity data for two standard soils (OECD and LUFA 2.2). An attempt was made to establish models for predicting the toxicity of elements to invertebrates using quantitative ion character-activity relationships (QICARs). In OECD soil, the element toxicity of four groups (Enchytraeus albidus mortality and reproduction, Folsomia candida and Eisenia fetida reproduction) showed significant correlations with atomic number, atomic mass and atomic ionization potential (0.852 ≤ R² ≤ 0.989, P < 0.05). For LUFA 2.2 soil, polarization force parameters and boiling point were most significant parameters for toxicity values of F. candida and Enchytraeus crypticus, respectively (0.866 ≤ R² ≤ 0.962, P < 0.05). Finally, QICAR models were established, and LC₅₀ or EC₅₀ of elements were predicted. Then, models were verified using standard and natural soils, and showed that errors between observed and predicted logLC₅₀/EC₅₀ were mostly < 0.5 orders of magnitude. Thus, the developed QICAR models have potential for predicting the toxicity of elements for soils.

Combined addition of biochar and garbage enzyme improving the humification and succession of fungal community during sewage sludge composting

The influences of combination of garbage enzyme and biochar on total organic carbon (TOC) degradation, humification and the fungal succession during sewage sludge (SS) composting were established. Results showed that the GE and BC + GE treatments significantly increased the enzyme activity of fluorescein diacetate hydrolase (FDA) and increased the TOC degradation rate by 9.8% and 21.9% relative to control. The excitation-emission matrix (EEM) combined with the percentage fluorescence response (Pi, n) also proved that the combination of BC and GE promoted fulvic acid-like and humic-like substances production, and thus increased humification. Furthermore, the combination of BC and GE effectively decreased the relative abundance of Unclassified_k_Fugni, while increased the abundance of Ascomycota and Basidiomycota compared with control. The four genera, Pseudeurotium, Talaromyces, Trichoderma, and Penicillium, were the main fungi for the humification. Comparatively, the combined of BC and GE showed the optimal performance for TOC degradation and humification during SS composting.

The response of bacterial communities to V and Cr and novel reducing bacteria near a vanadium‑titanium magnetite refinery

Soil contamination with multiple heavy metals has always been a pressing issue, but little attention has been given to V and Cr and their chemical fractions' impacts on microorganisms because Cr₂O₃ usually occurs as an associated mineral in vanadium mines. To investigate this issue, samples (N1-N6) less affected by anthropogenic activities were selected for microbial analysis. The area near the refinery was heavily contaminated according to the PLI (pollution load index). Actinobacteriota, Proteobacteria, and Chloroflexi were the dominant phyla in the soil. The diversity of bacteria was positively influenced by V and Cr and negatively influenced by pH, while the abundance was positively correlated with soil nutrients. Interestingly, the influence of heavy metals in the residual fraction on the microbial community structure and functional metabolism was higher than that in the oxidizable fraction, which may be due to the relatively low heavy metal valence of the oxidizable fraction, suggesting that low valence binding forms of multivalence elements have little effect on microorganisms in the soil. Ultimately, two strains with great efficiency in reducing V and Cr were screened, and co-occurrence network characteristics with significant positive interactions suggested that Bacillus can coordinate community structure in the same niche. This research will help to explore the bioavailability of heavy metals and further achieve the bioremediation of heavy metal contamination in soil.

Invasive plants as biosorbents for environmental remediation: a review

Water contamination is an environmental burden for the next generations, calling for advanced methods such as adsorption to remove pollutants. For instance, unwanted biowaste and invasive plants can be converted into biosorbents for environmental remediation. This would partly solve the negative effects of invasive plants, estimated at 120 billion dollars in the USA. Here we review the distribution, impact, and use of invasive plants for water treatment, with emphasis on the preparation of biosorbents and removal of pollutants such as cadmium, lead, copper, zinc, nickel, mercury, chromate, synthetic dyes, and fossil fuels. Those biosorbents can remove 90-99% heavy metals from aqueous solutions. High adsorption capacities of 476.190 mg/g for synthetic dyes and 211 g/g for diesel oils have been observed. We also discuss the regeneration of these biosorbents.

Cd and Pb immobilisation with iron oxide/lignin composite and the bacterial community response in soil

Iron oxide is a natural mineral that generally exists in the form of iron oxide-organic complexes (Fe-OM) in soil. Lignin is a naturally occurring polymer that is considered to be an important part of soil carbon cycling. In this study we prepared a composite material (MGE) with iron oxide and lignin based on the Fe-OM present in the soil. MGE was then applied to remediate Cd and Pb in contaminated soil. The results show that DTPA-Cd and DTPA-Pb levels were reduced by 58.87% and 78.09%, respectively. The bacterial community diversity index decreased in the iron oxide (GE) group, but a slight increase was observed in the MGE group. In terms of species composition in the MGE group, the abundance of Proteobacteria, Gemmatimonadota and Acidobacteriota increased, while the abundance of Bacteroidota, Actinobacteriota and Firmicutes decreased. The outcome in the GE group was the opposite. In the MGE group, HCl-Fe²⁺, HCl-Fe³⁺, and pH were significantly higher than in the other groups, indicating that MGE stimulated the growth of iron-reducing bacteria (FeRB) and promoted iron redox reactions. Iron oxide could be reduced to Fe²⁺ due to the activity of FeRB, and then Fe²⁺ would be oxidised and hydrolysed, which led to an increase in soil pH. Secondary minerals were formed during this process. With the oxidation of Fe²⁺ and the formation of secondary minerals, Cd and Pb could be stabilised in the oxides and were not easily released through a co-precipitation mechanism.

Streptomyces pactum and Bacillus consortium influenced the bioavailability of toxic metals, soil health, and growth attributes of Symphytum officinale in smelter/mining polluted soil

Soil microbes influence the uptake of toxic metals (TMs) by changing soil characteristics, bioavailability and translocation of TMs, and soil health indicators in polluted environment. The potential effect of Streptomyces pactum (Act12) and Bacillus consortium (B. subtilis and B. licheniformis; 1:1) on soil enzymes and bacterial abundance, bioavailability and translocation of Zn and Cd by Symphytum officinale, and physiological indicators in soil acquired from Fengxian (FX) mining site. Act12 and Bacillus consortium were applied at 0 (CK), 0.50 (T1), 1.50 (T2), and 2.50 (T3) g kg-1 in a split plot design and three times harvested (H). Results showed that soil pH significantly dropped, whereas, electrical conductivity increased at higher Act12 and Bacillus doses. The extractable Zn lowered and Cd increased at each harvest compared to their controls. Soil β-glucosidase, alkaline phosphatase, urease and sucrase improved, whereas, dehydrogenase reduced in harvest 2 and 3 (H2 and H3) as compared to harvest 1 (H1) after Act12 and Bacillus treatments. The main soil phyla individually contributed ∼5-55.6%. Soil bacterial communities' distribution was also altered by Act12 and Bacillus amendments. Proteobacteria, Acidobacteria, and Bacteroidetes increased, whereas, the Actinobacteria, Chloroflexi, and Gemmatimonadetes decreased during the one-year trial. The Zn and Cd concentration significantly decreased in shoots at each harvest, whereas, the roots concentration was far higher than the shoots, implicating the rhizoremediation by S. officinale. Accumulation factor (AF) and bioconcentration ratio (BCR) of Zn and Cd in shoots were lower and remained higher in case of roots than the standard level (≥1). BCR values of roots indicated that S. officinale can be used for rhizoremediation of TMs in smelter/mines-polluted soils. Thus, field trials in smelter/mines contaminated soils and the potential role of saponin and tannin exudation in metal translocation by plant will broaden our understanding about the mechanism of rhizoremediation of TMs by S. officinale.

Multiple factors influence bacterial community diversity and composition in soils with rare earth element and heavy metal co-contamination

The effects of long-term rare earth element (REE) and heavy metal (HM) contamination on soil bacterial communities remains poorly understood. In this study, soil samples co-contaminated with REEs and HMs were collected from a rare-earth tailing dam. The bacterial community composition and diversity were analyzed through Illumina high-throughput sequencing with 16S rRNA gene amplicons. Bacterial community richness and diversity were lower in the co-contaminated soils than in the uncontaminated soils, with clearly different bacterial community compositions. The results showed that total organic carbon and available potassium were the most important factors affecting bacterial community richness and diversity, followed by the REE and HM contents. Although the canonical correspondence analysis results showed that an REE alone had no obvious effects on bacterial community structures, we found that the combined effects of soil physicochemical properties and REE and HM contents regulated bacterial community structure and composition. The effects of REEs and HMs on bacterial communities were similar, whereas their combined contributions were greater than the individual effects of REEs or HMs. Some bacterial taxa were worth noting. These specifically included the plant growth-promoting bacteria Exiguobacterium (sensitive to REEs and HMs) and oligotrophic microorganisms with metal tolerance (prevalent in contaminated soil); moreover, relative abundance of JTB255-Marine Benthic Group, Rhodobacteraceae, Erythrobacter, and Truepera may be correlated with REEs. This study was the first to investigate the responses of bacterial communities to REE and HM co-contamination. The current results have major implications for the ecological risk assessment of environments co-contaminated with REEs and HMs.

Integrated Assessment of Cd-contaminated Paddy Soil with Application of Combined Ameliorants: A Three-Year Field Study

Cadmium accumulation in rice is a major source of Cd exposure in humans worldwide. A three-year field experiment was conducted to investigate the ecological safety and long-term stability of biochar combined with lime or silicon fertilizer for Cd immobilization in a polluted rice paddy. The results showed that the application of combined ameliorants could reduce the Cd content in brown rice to meet the Chinese maximum permissible limit for Cd content in food products (0.2 mg/kg). In addition, such amendments stimulated metabolic pathways in soil bacteria, including carbon metabolism, citrate cycle, pyruvate metabolism, biosynthesis of amino acids, and glycolysis/gluconeogenesis, revealing improvements in soil biological activity and soil health. Therefore, the results provide a practical strategy for the safe utilization of farmland with mild levels of heavy metal pollution.

Soil Contamination in the Problem Areas of Agrarian Slovakia

Landfills, old and abandoned mines, industrial sites, heaps, sludge ponds and other sources of pollution represent environmental threats and are characterized as chemical time bombs. This work is focused on the evaluation of soil contamination by risk elements using various indices (geoaccumulation index—Igeo, enrichment factor—EF, contamination factor—Cif and degree of contamination—Cd). These selected agrarian problem areas are located in Slovakia, especially in the air pollution field of landfills consisting of power plant fly ash, tannery and footwear wastes, leachate (lúženec), iron ore slag, waste from metallurgy and sludge ponds in which coal sludge waste is deposited and waste from ore treatment. Nine research sites in the agrarian region of Slovak Republic were monitored. Ten risk elements (Fe, Mn, Zn, Cu, Co, Ni, Cr, Pb, Cd and Hg) and pH/H2O were included in this study and were determined in surface soils (of 0.05 m to 0.15 m) using atomic absorption spectrometry (AAS). Our study showed the highest exceedance of the limit values of risk elements in the order Ni (51.85 times) > Co (25.47 times) > Cd (13.70 times) > Cu (12.78 times) > Cr (8.37 times) > Fe (8.26 times) > Hg (7.94 times) > Zn (5.71 times) > Pb (4.63 times). The content of risk elements increased based on the average values of Igeo in the order of Cr < Hg < Zn < Pb < Ni < Cu < Cd. Igeo values for cadmium indicated mild-to-extreme contamination at all sites. We found the most significant enrichment in the order of Cd > Cu > Pb > Ni > Zn > Hg > Cr. EF values for cadmium indicated extremely high enrichment; the Cif and Cd values indicated a very high degree of soil contamination near the nickel smelter landfill, an industrial metallurgical plant and old but active mines. The studied areas pose a serious danger not only to the soil but also to groundwater and biota due to the prevailing low soil reaction, which increases the mobility of toxic elements. The study provides important results for the development of effective strategies for the control and remediation of endangered areas.

Trend Analysis of Lead Content in Roadside Plant and Soil Samples in Turkey

Objectives

Lead (Pb) is one of the most common heavy metals which contaminate the environment. People may be exposed to Pb by inhaling the contaminated air droplets and dust particles through drinking water or eating contaminated foods such as vegetables grown in lead-contaminated soils. This study aimed to examine the changes in Pb levels measured in roadside plant and soil samples that have been exposed to heavy traffic for years.

Materials and Methods

Sixty-three articles were searched using keywords from different databases. Twenty-five of the scanned articles were found to be relevant for the determined criteria. The Pb levels were evaluated according to the previously measured Pb levels in plant and soil samples collected from the roadside by years.

Results

In the data collected from databases over the years, it was observed that there was a decrease in Pb accumulation in both soil and plant samples. Pb levels were higher in industrial cities and metropolitan areas than in rural areas.

Conclusion

In ealier studies, Pb levels have often been found to exceed safety limits. This may be due to the Pb added to gasoline in the past, as well as the low sensitivity of analytical methods used for measurement. The decrease over the years has been interpreted as the use of unleaded gasoline after 2004, taking essential measures to improve air quality and at the same time increasing the sensitivity of analytical methods.

Effects of antimony (III/V) on microbial activities and bacterial community structure in soil

Antimony (Sb) primarily exists in trivalent (III) and pentavalent (V) speciation in the soil environment and poses a potential threat to ecological soil function as a toxic metalloid element. To evaluate the ecological effect of Sb in soil, the effects of different concentrations of Sb(III) and Sb(V) on microbial biomass carbon (MBC), soil basal respiration (SBR), potential nitrification rate (PNR), five enzyme activities and bacterial community structure were investigated using biochemical methods and high-throughput sequencing technology during the 1st and 8th weeks of exposure. The results of these experiments indicated that MBC and SBR were influenced, and PNR, FDA hydrolysis activity and urease activity were significantly inhibited by Sb(III) and Sb(V), while the activities of dehydrogenase, acid phosphatase and β-glucosidase had no clear effects on the amounts of Sb(III) or Sb(V). Meanwhile, there are some discrepancies regarding the effects of Sb(III) and Sb(V) on the same microbial indicators, and incubation time is not a neglected factor. Sequencing analysis revealed that Sb(III) decreased the bacterial diversity indexes and abundances of specific bacteria at the phylum level, whereas Sb(V) had little effect on them. The bacterial community structure at the genus level was altered by Sb(III) and Sb(V), in which the abundances of some functional microbes were increased, while the abundances of some functional microbes were reduced under Sb pollution. In general, PNR, FDA hydrolysis activity, urease activity and the abundances of specific functional microbes (i.e., Nitrospira) could be considered as sensitive indicators of Sb contamination. This study highlights the ecological effect of Sb(III) and Sb(V) on agricultural soil and will provides references for environmental monitoring and assessment.

Soil characteristics and microbial community response in rare earth mining areas in southern Jiangxi Province, China

The microbial community and functional flora in rare earth mining areas are correlated, but the characteristics and metabolic pathways of pollutant in such mining areas are still poorly known. The heavy metals, rare earth elements, and microorganisms present after mining of rare earth mine sites were analyzed. After mining, all sampling sites exhibited low pH and low total organic carbon levels, accompanied by high iron and aluminum concentrations. The development of vegetation is closely related to the development of microorganisms. In the complex environment of rare earth mining areas, Proteobacteria exhibit an absolute competitive advantage. During mine environmental recovery, the relative abundances of Acidobacteria and Chloroflexi will increase markedly, and with further restoration the relative abundance of Firmicutes will gradually decrease. Many genera of bacteria related to the N cycle and heavy metal metabolism were detected in the study area, indicating the important metabolic pathways for ammonia nitrogen and heavy metals in rare earth mining areas. Bacterial genera that promote plant nitrogen fixation also occur in the area, further revealing the nitrogen cycle. This research is important for health assessment and recovery of rare earth mines.

Biosurfactant is a powerful tool for the bioremediation of heavy metals from contaminated soils

Heavy metal toxicity has become a pressing ecological problem that affects the ecosystems through bioaccumulation, representing a serious public health hazard. Many conventional strategies have been developed and applied to decontaminate and restore metal-contaminated areas. However, these conventional approaches are not very suitable and environmentally safe for heavy metal remediation because of their high operational costs, high energy requirements, post-waste disposal problems, and secondary pollutant generation. Thus, biosurfactant-based bioremediation of heavy metals is a sustainable and promising approach because of its biodegradation capability, economic effectiveness, and ecofriendly nature. Pseudomonas sp., Bacillus sp., Citrobacter freundii, and Candida tropicalis have been isolated as potential sources of biosurfactants and produce compounds such as surfactin, rhamnolipids, and sophorolipids. Owing to the severity of heavy metal pollution in certain parts of the environment, biosurfactants have garnered great interest and attention as an emerging multi-functional technology of the new century for successful removal of heavy metal pollutants. The present study describes the role of biosurfactants in the bioremediation of heavy metals from contaminated environments. Moreover, the interaction mechanism underlying biosurfactant-metal complexation and metal remediation are discussed. Based on the review of the literature, further research is warranted to elucidate the mechanistic roles and explore the structural characterization and gene regulation of biosurfactants to improve their productivity and expand their applicability in bioremediation.

Effects of Heavy Metals/Metalloids and Soil Properties on Microbial Communities in Farmland in the Vicinity of a Metals Smelter

Microorganisms play a fundamental role in biogeochemical cycling and are highly sensitive to environmental factors, including the physiochemical properties of the soils and the concentrations of heavy metals/metalloids. In this study, high-throughput sequencing of the 16S rRNA gene was used to study the microbial communities of farmland soils in farmland in the vicinity of a lead–zinc smelter. Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, and Gemmatimonadetes were the predominant phyla in the sites of interest. Sphingomonas, Gemmatimonas, Lysobacter, Flavisolibacter, and Chitinophaga were heavy metal-/metalloid-tolerant microbial groups with potential for bioremediation of the heavy metal/metalloid contaminated soils. However, the bacterial diversity was different for the different sites. The contents of heavy metal/metalloid species and the soil properties were studied to evaluate the effect on the soil bacterial communities. The Mantel test revealed that soil pH, total cadmium (T-Cd), and available arsenic played a vital role in determining the structure of the microbial communities. Further, we analyzed statistically the heavy metals/metalloids and the soil properties, and the results revealed that the microbial richness and diversity were regulated mainly by the soil properties, which correlated positively with organic matter and available nitrogen, while available phosphorus and available potassium were negatively correlated. The functional annotation of the prokaryotic taxa (FAPROTAX) method was used to predict the function of the microbial communities. Chemoheterotrophy and airborne chemoheterotrophy of the main microbial community functions were inhibited by soil pH and the heavy metals/metalloids, except in the case of available lead. Mantel tests revealed that T-Cd and available zinc were the dominant factors affecting the functions of the microbial communities. Overall, the research indicated that in contaminated soils, the presence of multiple heavy metals/metalloids, and the soil properties synergistically shaped the structure and function of the microbial communities.

Multi-ion imprinted polymers (MIIPs) for simultaneous extraction and preconcentration of Sb(III), Te(IV), Pb(II) and Cd(II) ions from drinking water sources

Simultaneous extraction and preconcentration of several potentially toxic metal ions have received great attention because of their toxicological effects on aquatic life and human beings. Multi-ion imprinted polymers (MIIP) have proved to be promising adsorbents with excellent specific recognition performance than single-ion imprinted polymer. Therefore, in this study, the MIIP strategy was employed for simultaneous extraction and enrichment of Sb(III), Cd(II), Pb(II) and Te(IV) ions from drinking water sources. MIIPs was used as a sorbent material in ultrasound-assisted dispersive solid phase extraction combined with inductively coupled plasma optical emission spectrometry (UA-DSPE/ICP-OES). The experimental parameters that affect the extraction efficiency and recovery of Sb(III), Cd(II), Pb(II) and Te(IV) were investigated using response surface methodology. Under optimum conditions, the enhancement factors, linear range, limit of detection (LOD) and limit of quantification (LOQ) were 37.7-51.1, 0.04-100 µg L^-1, 0.011-0.28 µg L^-1, 0.037-093 µg L^-1, respectively. The intra-day (n = 10) and inter-day (n = 5) precision expressed as relative standard deviations (%RSDs,) were 3% and 5%, respectively. The proposed UA-DSPE/ICP-OES method was applied for preconcentration and determination of the trace metal ions in environmental samples. Furthermore, the accuracy of the method was evaluated using spiked recovery experiments and the percentage recoveries ranged from 95% to 99.3%.

OPT gene family analysis of potato (Solanum tuberosum) responding to heavy metal stress: Comparative omics and co-expression networks revealed the underlying core templates and specific response patterns

Oligopeptides transporter (OPT) can maintain intracellular metal homeostat, however, their evolutionary characteristics, as well as their expression patterns in heavy metal exposure, remain unclear. Compared with previous OPT family identification, we identified 94 OPT genes (including 21 in potato) in potato and 4 other plants by HMMER program based on OPT domain (PF03169) for the first time. Secondly, conserved and special OPTs were found through comprehensive analysis. Thirdly, spatio-temporal tissue specific expression patterns and co-expression frameworks of potato OPT genes under different heavy metal stress were constructed. These data can provide excellent gene resources for food security and soil remediation.

Microbial retention and resistances in stormwater quality improvement devices treating road runoff

Current knowledge about the microbial communities that occur in urban road runoff is scarce. Road runoff of trafficked roads can be heavily polluted and is treated by stormwater quality improvement devices (SQIDs). However, microbes may influence the treatment process of these devices or could lead to stress resistant opportunistic microbial strains. In this study, the microbial community in the influent, effluent and the filter materials used to remove dissolved heavy metals from two different SQIDs were analyzed to determine microbial load, retention, composition, and mobile resistance genes. Although the microbes were replaced by new taxa in the effluent, there was no major retention of microbial genera. Further, the bacterial abundance of the SQIDs effluent was relatively stable over time. The heavy metal content correlated with intl1 and with microbial genera. The filter media itself was enriched with Intl1 gene cassettes, carrying several heavy metal and multidrug resistance genes (e.g. czrA, czcA, silP, mexW and mexI), indicating that this is a hot spot for horizontal gene transfer. Overall, the results shed light on road runoff microbial communities, and pointed to distinct bacterial communities within the SQIDs, which subsequently influence the microbial community and the genes released with the treated water.

Transcriptome Analysis and Expression Profiling of Molecular Responses to Cd Toxicity in Morchella spongiola

Morchella is a genus of fungi with the ability to concentrate Cd both in the fruit-body and mycelium. However, the molecular mechanisms conferring resistance to Cd stress in Morchella are unknown. Here, RNA-based transcriptomic sequencing was used to identify the genes and pathways involved in Cd tolerance in Morchella spongiola. 7444 differentially expressed genes (DEGs) were identified by cultivating M. spongiola in media containing 0.15, 0.90, or 1.50 mg/L Cd²⁺. The DEGs were divided into six sub-clusters based on their global expression profiles. GO enrichment analysis indicated that numerous DEGs were associated with catalytic activity, cell cycle control, and the ribosome. KEGG enrichment analysis showed that the main pathways under Cd stress were MAPK signaling, oxidative phosphorylation, pyruvate metabolism, and propanoate metabolism. In addition, several DEGs encoding ion transporters, enzymatic/non-enzymatic antioxidants, and transcription factors were identified. Based on these results, a preliminary gene regulatory network was firstly proposed to illustrate the molecular mechanisms of Cd detoxification in M. spongiola. These results provide valuable insights into the Cd tolerance mechanism of M. spongiola and constitute a robust foundation for further studies on detoxification mechanisms in macrofungi that could potentially lead to the development of new and improved fungal bioremediation strategies.

Characteristics and Influencing Factors of Microbial Community in Heavy Metal Contaminated Soil under Silicon Fertilizer and Biochar Remediation

Silicon fertilizer and biochar have been widely used to remediate soil contaminated by heavy metals. The effects and mechanism of silicon fertilizer and biochar addition on the heavy metal availability, soil biological properties, and microbial community characteristics need further study in soils contaminated by heavy metals. Therefore, this research determined how silicon fertilizer, biochar, and their combined using affected microbial communities related with nitrogen and phosphorus cycling. The abundance and composition of the microbial community were evaluated by quantitative PCR and phospholipid fatty acid analysis, respectively. Results showed that silicon fertilizer and biochar addition significantly changed soil properties, including pH, total organic carbon, ammonium, nitrate. The Cd and Zn speciation were significantly reduced by silicon fertilizer, biochar, and their integrated application. Microbial community abundance and structure were also significantly changed. Principal component analysis shows that the difference in soil microbial community structure is the most obvious under the combined addition of biochar, silicon fertilizer and biochar. In addition, the results of fluorescence quantitative PCR showed that with biological addition, the number of soil bacteria was significantly reduced. This study reveals the influence of silicon fertilizer and biochar on bacterial and fungal communities in heavy metal soils and the effect of soil heavy metal availability.

Morphological changes and bioaccumulation in response to cadmium exposure in Morchella spongiola, a fungus with potential for detoxification

Morchella is a genus of edible fungi with strong resistance to Cd and the ability to accumulate it in the mycelium. However, the mechanisms conferring Cd resistance in Morchella are unknown. In the present study, morphological and physiological responses to Cd were evaluated in the mycelia of Morchella spongiola. Variations in hyphal micro-morphology including twisting, folding and kinking in mycelia exposed to different Cd concentrations (0.15, 0.9, 1.5, 2.4, 5.0 mg/L) were observed using scanning electron microscopy. Deposition of Cd precipitates on cell surfaces (at Cd concentrations > 2.4 mg/L) was shown by SEM-EDS. Transmission electron microscopy analysis of cells exposed to different concentrations of Cd revealed the loss of intracellular structures and the localization of Cd depositions inside/outside the cell. FTIR analysis showed that functional groups such as C=O, -OH, -NH and -CH could be responsible for Cd binding on the cell surface of M. spongiola. In addition, intracellular accumulation was observed in cultures at low Cd concentrations (< 0.9 mg/L), while extracellular adsorption occurred at higher concentrations. These results provide valuable information on the Cd tolerance mechanism in M. spongiola and constitute a robust foundation for further studies on fungal bioremediation strategies.

Acute Toxic and Genotoxic Effects of Aluminum and Manganese Using In Vitro Models

The objective of this study was to use the same concentrations of aluminum (Al) and manganese (Mn) detected previously in groundwater above those permitted by Brazilian law and assess their cytotoxic and genotoxic effects in hamster ovary cell lines and their mutagenic effects through the Salmonella microsome assay. Chinese hamster ovary (CHO) and CHO-XRS5 cells were treated with different concentrations of Al and Mn (0.2 to 2.0 mg/L and 0.1 to 3.0 mg/L, respectively). The Ames test was used to analyze the concentrations of Al and Mn ranging from 0.025 to 1.0 mg/L and 0.0125 to 1.5 mg/L, respectively. Both metals showed cytotoxic effects on both cell lines and two bacterial strains (TA98 and TA100). The genotoxic effects of the highest concentrations of Al and Mn in cell lines showed nuclear buds, micronuclei, and DNA damage; however, none of the concentrations showed a positive mutagenic response in the Ames test. This is one of the few studies to demonstrate the cytotoxic effects of Al and Mn through the Ames test. In addition, the metals caused genomic instability in cell lines. Therefore, this study may help hasten the review of established regulatory standards for human consumption of groundwater.

Deposition of Potentially Toxic Metals in the Soil from Surrounding Cement Plants in a Karst Area of Southeastern Brazil

Cement factories are the main sources of environmental pollutants among the different industrial activities, including soil contamination by potentially toxic metals. The karst region of Southeastern Brazil is known for the implementation of large cement producing facilities. This study aims to evaluate whether there is an increase in the concentration of PTM in the soil surrounding the cement plants and to estimate their harmfulness to both local human population and environment. In total, 18 soil samples were collected from the surroundings of three cement plants as well as four soil samples from areas outside the influence of cement plants and concentration of the following potentially toxic metals (PTM) were estimated: Cd, Pb, Co, Cu, Cr, Mn, Ni, and Zn. The results revealed that all PTM concentrations from cement plant surroundings were significantly higher than PTM concentrations from control areas and no PTM concentrations from CPS or CA soil samples exceeded national and global contamination thresholds. However, Igeo Index indicated low level soil contamination by Pb, Cu, and Cr, as well as high levels for Co. We could not verify significant non-carcinogenic risk to health for any soil sample, but carcinogenic risk analysis revealed different levels of carcinogenic risk among the sampled locations, for both adults and children. Our results indicate that exclusively evaluating the concentration of potentially toxic metals is not enough to verify the potential harmful effects of cement production for the surrounding population. Here we evidence that additional indices, based on both contamination indices and health risk assessments, should be considered for better evaluation of the impacts of cement production activity.

Study on the spatial distribution of ureolytic microorganisms in farmland soil around tailings with different heavy metal pollution

Ureolytic microorganisms, a kind of microorganism which can secrete urease and decompose urea, have great potential in remediation of soil heavy metals based on microbial induced carbonate precipitation. However, the horizontal and vertical distribution of ureolytic microbial community in heavy metals contaminated soils is poorly understood. In this study, urease genes in agricultural soils surrounding tailings were first investigated using metagenomic in two dimensions: heavy metal pollution (Low-L, Middle-M, High-H) and soil depth (0-20 cm, 20-40 cm, 40-60 cm, 60-80 cm, 80-100 cm). Results showed that the effect of heavy metal concentration on ureolytic microorganisms was indeed significant, while the changes of ureolytic microorganisms with increasing soil depth varied in the vertical direction at the same level of heavy metal contamination. H site had the highest diversity of ureolytic microorganisms except for the topsoil. And at the same heavy metal contamination level, the ureolytic microbial diversity was lower in deeper soils. Proteobacteria, Actinobacteria and Thaumarchaeota (Archaea) were the dominant phyla of ureolytic microorganisms in all three sites, accounting for more than 80% of the total. However, the respond to the heavy metal concentrations of three phyla were different, which were increasing, decreasing and essentially unchanged, respectively. Besides, other environmental factors such as SOM and pH had different effects on ureolytic microorganisms, with Proteobacteria being positively correlated and Actinobacteria being the opposite. Another phenomenon was that Actinobacteria and Verrucomicrobia were biomarkers of group L, which could significantly explain the difference with the other two sites. These results provided valuable information for further research on the response mechanism and remediation of heavy metal pollution by ureolytic microbial system.

Physiological and metagenomic strategies uncover the rhizosphere bacterial microbiome succession underlying three common environmental stresses in cassava

The most common environmental pollutants such as cadmium (Cd), glyphosate and tetracycline have led to profoundly adverse impacts on plant productivity. However, how tropical crops such as cassava sense these pollutants via roots and how rhizosphere microbiome interacts with the host and pollutants remain largely unknown. In this study, we found these stresses significantly inhibited plant growth and triggered cell damage in a dosage-dependent manner, and the toxic effect on redox homeostasis was correlated with antioxidant metabolism. Using metagenomics technique, we found the rhizosphere microbiomes dynamically altered as the dose of these stresses increased. We also identified stressor-associated metagenome-assembled genomes and microbial metabolic pathways as well as mobile genetic elements in the rhizosphere microbiomes. Next, a co-occurrence network of both physiological and microbiome features was constructed to explore how these pollutants derived oxidative damage through the microbiome succession. Notably, phyllosphere transplantation of Agrobacterium tumefaciens or Pseudomonas stutzeri can significantly alleviate the negative effects of stresses on cassava growth and redox homeostasis. Collectively, this study demonstrated the dynamics of rhizosphere bacterial microbiome of cassava under three common environmental stresses, and A. tumefaciens and P. stutzeri could be developed as potential beneficial bacteria to alleviate Cd, glyphosate and tetracycline-triggered damage to cassava.

A review on mechanism of biomineralization using microbial-induced precipitation for immobilizing lead ions

Lead (Pb) is a toxic metal originating from natural processes and anthropogenic activities such as coal power plants, mining, waste gas fuel, leather whipping, paint, and battery factories, which has adverse effects on the ecosystem and the health of human beings. Hence, the studies about investigating the remediation of Pb pollution have aroused extensive attention. Microbial remediation has the advantages of lower cost, higher efficiency, and less impact on the environment. This paper represented a review on the mechanism of biomineralization using microbial-induced precipitation for immobilizing Pb(II), including microbial-induced carbonate precipitation (MICP), microbial-induced phosphate precipitation (MIPP), and direct mineralization. The main mechanisms including biosorption, bioaccumulation, complexation, and biomineralization could decrease Pb(II) concentrations and convert exchangeable state into less toxic residual state. We also discuss the factors that govern methods for the bioremediation of Pb such as microbe characteristics, pH, temperature, and humic substances. Based on the above reviews, we provide a scientific basis for the remediation performance of microbial-induced precipitation technique and theoretical guidance for the application of Pb(II) remediation in soils and wastewater.

The effects of vermicompost and shell powder addition on Cd bioavailability, enzyme activity and bacterial community in Cd-contaminated soil: A field study

Cadmium (Cd) contamination has become serious in soil and in situ stabilization technology has been widely used for heavy metal remediation. A field study was conducted to determine the effect of amendments with the doses of 3 kg/m2, including single vermicompost (A1), a 95% vermicompost mixed with 5% shell powder composite (A2) and a 95% vermicompost mixed with 5% modified shell powder composite (A3), on the Cd bioavailability, enzyme activity and bacterial community in soil, and the experiment was conducted with lettuce (Lactuca sativa L.) grown in a Cd-contaminated farmland soil. The results showed that the application of amendments increased the pH, cation exchange capacity (CEC), organic matter (OM), available nutrients, catalase (S-CAT), invertase (S-SC) and urease (S-UE) activities in soil, while significantly reduced the Cd bioavailability with the lowest Cd bioavailability being observed in the soil with A3 application. The soil bacterial richness and diversity increased after amendments application, and the bacterial community was characterized by an increase in metal-tolerant bacteria but a decrease in Proteobacteria, Acidobacteria and Gemmatimonadetes. In addition, the application of amendments significantly improved the growth of lettuce (Lactuca sativa L.) and inhibited Cd accumulation in its edible parts, especially, the Cd content in lettuce (Lactuca sativa L.) grown in soil with A3 application was below the limit of the National Food Safety Standard of China (maximum level ≤ 0.2 mg/kg). Thus, composite amendment obtained from vermicompost mixed with modified shell powder can be used as potential remediation material in Cd-contaminated soil. CAPSULE: Composite amendment obtained from vermicompost and modified shell powder had good effects on remediation of Cd-contaminated soil.

Application of enzymes as a diagnostic tool for soils as affected by municipal solid wastes

Assessing the relationship between soil enzyme activities (SEAs) and heavy metals (HMs) without any amendment has rarely been conducted in soils contaminated with municipal solid wastes (MSW). Five soil enzymes [dehydrogenase (DHA), alkaline phosphatase (ALP), acid phosphatase (ACP), urease (UR), and nitrate reductase (NR)] have been assessed for HMs bioremediation using Zea mays L. grown in unamended soils that were contaminated with different types of MSW. Pot experiment was conducted for two seasons with soils collected from seven different locations within the MSW site. Experimental soil samples included a control (CA), contaminated by brick kiln wastes (SA1), kitchen and household wastes (SA2), medical wastes (SA3), mixed wastes (SA4), glass wastes (SA5), and metal scrap wastes (SA6). Rhizospheric soils were collected after the harvest of each season to investigate the impact of HMs on SEAs and physicochemical properties of soil. The results revealed an increase in DHA, ALP, and NR activities by 89.30%, 58.03% and 21.98% in SA1. Likewise, enhanced activities for UR (28.26%) and ACP (19.6%) were observed in SA3 and SA5 respectively. Insignificant increase in the macronutrients and organic carbon (OC) were also noted. The increased microbial count and the relatively higher amount of organic matter (OM) in the rhizosphere indicated the role of OM in HMs immobilization. Principal component analysis (PCA) indicated that DHA and NR are the important soil enzymes, underscored by their active involvement in the C and N turnover in the soil. Likewise, correlation analysis showed that DHA and NR activities were positively correlated with copper (Cu) (0.90, p < 0.01; 0.88, p < 0.01), suggesting its participation as a cofactor in enzymatic activities. In contrast, DHA was negatively correlated with cadmium (Cd) (-0.48, p < 0 0.05). Finally, these results indicated that in the absence of exogenous nutrient amendment, the SEAs were governed by OC, available nitrogen (Avl. N), Cu and Cd respectively. The study also highlighted the need for extensive research on SEAs for its utilization as a bioindicator in various soil bioremediation and quality management practices.

Microbial communities in the rhizosphere of different willow genotypes affect phytoremediation potential in Cd contaminated soil

Plant-associated microorganisms play an important role in controlling heavy metal uptake and accumulation in aerial parts. The microbial community and its interaction with Cd accumulation by willow were assessed to explore the association of phytoextraction efficiency and rhizospheric microbial populations. Therefore, the rhizosphere microbial compositions of three willow genotypes grown in two Cd polluted sites were investigated, focusing on their interactions with phytoremediation potential. Principal coordinate analysis revealed a significant effect of genotype on the rhizosphere microbial communities. Distinct beneficial microorganisms, such as plant growth promoting bacteria (PGPB) and mycorrhizal fungi, were assembled in the rhizosphere of different willow genotypes. Linear mixed models showed that the relative abundance of PGPB was positively associated (p < 0.01) with Cd accumulation, since these microbes significantly increased willow growth. The higher abundance of arbuscular mycorrhizal fungi in the rhizosphere of Salix × aureo-pendula CL 'J1011' at the Kejing site, showed a negative correlation with the Cd content, but a positive correlation with biomass. Conversely, mycorrhizal fungi, were more abundant in the rhizosphere of S. × jiangsuensis CL. 'J2345' and positively correlated with the Cd content in willow tissues. This study provides new insights into the distinctive microbial communities in rhizosphere of different willow genotypes, which may be consistent with the phytoremediation potential.

Microbial diversity and activity assessment in a 100-year-old lead mine

Mining activities frequently leave a legacy of residues that remain in the area for long periods causing the pollution of surroundings. We studied on a 100 year-old mine, the behavior of potentially toxic elements (PTEs) and their ecotoxicological impact on activity and diversity of microorganisms. The PTEs contamination assessment allowed the classification of the materials as highly (reference- and contaminated-samples) and very highly polluted (illegal spill of olive mill wastes (OMW), tailings, and dumps). OMW presented the lowest enzymatic activities while tailings and dumps had low dehydrogenase and arylsulfatase activities. All the α-diversity indices studied were negatively impacted in dumps. Tailings had lower Chao1 and PD whole tree values as compared to those of reference-samples. β-diversity analysis showed similar bacterial community composition for reference- and contaminated-samples, significantly differing from that of tailings and dumps. The relative abundance of Gemmatimonadetes, Bacteroidetes, and Verrucomicrobia was lower in OMW, tailings, and dumps as compared to reference-samples. Fifty-seven operational taxonomic units were selected as responsible for the changes observed between samples. This study highlights that assessing the relationship between physicochemical properties and microbial diversity and activity gives clues about ongoing regulating processes that can be helpful for stakeholders to define an appropriate management strategy.

Comparing the effect of Cu-based fungicides and pure Cu salts on microbial biomass, microbial community structure and bacterial community tolerance to Cu

The effect of Cu on three different microbial endpoints was studied using different Cu sources, in order to check the usefulness of pure Cu salts to estimate the toxicity of commercial Cu fungicides on soil microbes. Cu additions caused similar dose-response curves of substrate induced respiration (SIR) decreases regardless of Cu source, i.e. the use of pure Cu salts to estimate the effect of Cu fungicides on microbial biomass using SIR may be useful. Phospholipid fatty acid (PLFA) analysis showed that the Cu source was more important for the microbial community structure than Cu concentration. Thus, the use of Cu salts to infer the effects of Cu fungicides on microbial community structure using PLFA analysis is not recommended, since effects of Cu concentration will be confounded with Cu source. Analyzing pollution induced community tolerance (PICT) to Cu showed that the use of pure Cu salts may overestimate Cu effects if Cu salt additions modified the soil pH. The highest doses of Cu salts increased bacterial community tolerance to Cu between 300 and 600 times, while commercial Cu fungicide increases were between 20 and 160 times. Therefore, the use of pure Cu salts to estimate the Cu fungicides effects on soil microbes is not recommended for PLFAs analyses, not suitable for PICT at high Cu concentrations, while useful for SIR.

Responses of ammonia-oxidizing microorganisms to biochar and compost amendments of heavy metals-polluted soil

Heavy metal pollution affects soil ecological function. Biochar and compost can effectively remediate heavy metals and increase soil nutrients. The effects and mechanisms of biochar and compost amendments on soil nitrogen cycle function in heavy-metal contaminated soils are not fully understood. This study examined how biochar, compost, and their integrated use affected ammonia-oxidizing microorganisms in heavy metal polluted soil. Quantitative PCR was used to determine the abundance of ammonia-oxidizing archaea (AOA) and bacteria (AOB). Ammonia monooxygenase (AMO) activity was evaluated by the enzyme-linked immunosorbent assay. Results showed that compost rather than biochar improved nitrogen conversion in soil. Biochar, compost, or their integrated application significantly reduced the effective Zn and Cd speciation. Adding compost obviously increased As and Cu effective speciation, bacterial 16S rRNA abundance, and AMO activity. AOB, stimulated by compost addition, was significantly more abundant than AOA throughout remediation. Correlation analysis showed that AOB abundance positively correlated with NO₃^--N (r = 0.830, P < 0.01), and that AMO activity had significant correlation with EC (r = -0.908, P < 0.01) and water-soluble carbon (r = -0.868, P < 0.01). Those seem to be the most vital factors affecting AOB community and their function in heavy metal-polluted soil remediated by biochar and compost.

Remediation of Cu-polluted soil with analcime synthesized from engineering abandoned soils through green chemistry approaches

Due to the large output and potential ecological risks, disposal of engineering abandoned soils (EAS) has become an enormous challenge for human society. Herein, EAS has been transformed into microporous analcime (ANA) zeolite material through a fast, energy-efficient, and straightforward conversion process. The as-synthesized ANA has been employed to remediate Cu-polluted soil, which shows a significant ecological restoration function in a vegetable pot experiment. With 25 g/kg ANA into Cu contaminated soil (total Cu concentration: 200 ppm), the Cu accumulation concentration in vegetables has been decreased from 5.60 down to 1.80 mg/kg (approaching the background Cu level 1.70 mg/kg in vegetables). Detailed mechanism study combining with DFT calculations reveals that the Cu²⁺ in soil has been captured both inside the ANA pore channels and on the surface via ion-exchange and surface adsorption mechanism. The whole process, including ANA synthesis and Cu polluted soil remediation, has been optimized to show a valuable conceptual model to recycle EAS resource and in-situ remediate Cu polluted soil.

The impact of sewage sludge on the fungal communities in the rhizosphere and roots of barley and on barley yield

Current problems with sewage sludge (SS) disposal could be solved by application to agricultural land considering its fertilizer properties and ability to improve soil condition. However, SS may contain heavy metals as well as pathogenic microorganisms. In this study, molecular analysis of partial 18S rRNA gene was used to study the impact of SS application into the soil on the genetic diversity of fungal communities, especially arbuscular mycorrhizal fungi in the rhizosphere and roots of barley. These samples were collected on three dates from the control soil without SS and from the soil with the addition of SS at the concentrations of 5 and 15 t ha-1. Fungal alpha diversity in the rhizosphere of barley was affected by SS differently than in barley roots. In addition, principal component analysis and cluster analysis revealed that fungal communities were strongly influenced by the SS addition into the soil, sample type, and the sampling date. This approach was complemented by an evaluation of the basic parameters of barley production and the response of these parameters to the presence of SS in the soil. The plant height increased with increasing SS concentration and the thousand seed weight significantly increased at the concentration of 5 t ha-1 SS but significantly decreased in 15 t ha-1.

Insight into functionally active bacteria in nitrification following Na+ and Mg2+ exposure based on 16S rDNA and 16S rRNA sequencing

Despite increasing interests in osmotic membrane bioreactors, the information regarding the bacterial toxicity effects of reversely transported draw solute (RTDS) is limited. In this study, two representative draw solutes (NaCl and MgCl₂) were used at different concentrations (0, 2.5, 5.0, 7.5 and 10.0 g/L) to evaluate their toxicity in a continuous nitrifying bioreactor. Notably, Mg²⁺ selectively inhibited the activity of ammonia-oxidizing bacteria (AOB), which decreased to 11.3% at 7.5 g-Mg²⁺/L. The rRNA-based analysis was more effective than the rDNA-based analysis to elucidate the relationship between active communities of nitrifying bacteria and the actual nitrifying performance. Nitrosomonas europaea, a representative AOB, was vulnerable to Mg²⁺ in comparison to Na⁺. In contrast, the dominant nitrite-oxidizing bacteria (NOB), Nitrobacter winogradskyi and Nitrolancea hollandica, maintained a relevant level of relative abundance for achieving nitrite oxidation after exposure to 10 g/L Na⁺ and Mg²⁺. This fundamental inhibition information of the draw solute can be applied to set the operational regime preventing the critical solute concentration in mixed liquor of nitrifying OMBRs.

Insight into metal binding properties of biochar-derived DOM using EEM-PARAFAC and differential absorption spectra combined with two-dimensional correlation spectroscopy

A large amount of biochar-derived dissolved organic matter (BDOM) will be released into the environment with biochars application into repairing soil/water, which may alter the fate and transport of contaminants. In this study, four DOM samples were extracted from cauliflower root biochar (CRBC), reed straw biochar (RSBC), corn stalks biochar (CSBC), and potato stalk biochar (PSBC). Excitation-emission matrix combined with parallel factor (EEM-PARAFAC) analysis, differential absorbance spectra (DAS), and two-dimensional correlation spectroscopy (2D-COS) analysis were applied to explore the complexation property of BDOM with metals. DAS showed sites heterogeneity within the DOM pool for metals complexing. Humic-like and fulvic-like substances were main fluorescent components identified by EEM-PARAFAC. 2D-COS analysis revealed that polysaccharides and aliphatic firstly responded to Pb(II) binding with CRBC-derived DOM and three other biochar-derived DOM, respectively. While aliphatic groups, aromatic N=O, and polysaccharides gave the fastest response to Cu(II) binding with CRBC, RSBC, and the other two biochar-derived DOM, respectively.