Hierarchical assembly of two-dimensional homochiral nanocavity arrays

Metal-organic honeycomb nanomeshes with tunable cavity size

We present a systematic study of metal-organic honeycomb lattices assembled from simple ditopic molecular bricks and Co atoms on Ag(111). This approach enables us to fabricate size- and shape-controlled open nanomeshes with pore dimensions up to 5.7 nm. The networks are thermally robust while extending over microm2 large areas as single domains. They are shape resistant in the presence of further deposited materials and represent templates to organize guest species and realize molecular rotary systems.

Self-recognition and self-selection in multicomponent supramolecular coordination networks on surfaces

Self-recognition, self-selection, and dynamic self-organization are of fundamental importance for the assembly of all supramolecular systems, but molecular-level information is not generally accessible. We present direct examples of these critical steps by using scanning tunneling microscopy to study mixtures of complementary organic ligands on a copper substrate. The ligands coordinate cooperatively with iron atoms to form well ordered arrays of rectangular multicomponent compartments whose size and shape can be deliberately tuned by selecting ligands of desired length from complementary ligand families. We demonstrate explicitly that highly ordered supramolecular arrays can be produced from redundant ligand mixtures by molecular self-recognition and -selection, enabled by efficient error correction and cooperativity, and show an example of failed self-selection due to error tolerance in the ligand mixture, leading to a disordered structure.

Coexistence of homochiral and heterochiral adenine domains at the liquid/solid interface

In this work, the self-assembly of the DNA base molecule adenine (A) is imaged with high-resolution scanning tunneling microscopy (STM) at the liquid (1-octanol)/solid (HOPG) interface at room temperature. Rather surprisingly, the STM results reveal, for the first time, the spontaneous formation of two coexisting distinct (homo- and heterochiral) domains of adenine, which are formed at the liquid/solid interface without changing any experimental conditions. Ab initio density functional theory (DFT) calculations support our STM findings and suggest the existence of various A networks of nearly similar stability that all are constructed from the most stable A dimer.

Molecular architectonic on metal surfaces

The engineering of highly organized systems from instructed molecular building blocks opens up new vistas for the control of matter and the exploration of nanodevice concepts. Recent investigations demonstrate that well-defined surfaces provide versatile platforms for steering and monitoring the assembly of molecular nanoarchitectures in exquisite detail. This review delineates the principles of noncovalent synthesis on metal substrates under ultrahigh vacuum conditions and briefly assesses the pertaining terminology-self-assembly, self-organization, and self-organized growth. It presents exemplary scanning-tunneling-microscopy observations, providing atomistic insight into the self-assembly of organic clusters, chains, and superlattices, and the metal-directed assembly of low-dimensional coordination architectures. This review also describes hierarchic-assembly protocols leading to intricate multilevel order. Molecular architectonic on metal surfaces represents a versatile rationale to realize structurally complex nanosystems with specific shape, composition, and functional properties, which bear promise for technological applications.

Monitoring two-dimensional coordination reactions: directed assembly of co-terephthalate nanosystems on Au(111)

We report scanning tunneling microscopy observations on the formation of 2D Co-based coordination compounds on the reconstructed Au(111) surface. Preorganized arrays of Co bilayer islands are shown to be local reaction sites, which are consumed in the formation of Co-terephthalate aggregates and regular nanoporous grids. The latter exhibit a planar geometry stabilized by the smooth substrate. The nanogrids are based on a rectangular motif, which is understood as an intrinsic feature of a 2D cobaltous terephthalate sheet and dominates over the templating influence of the quasihexagonal substrate atomic lattice. The dynamics of the Co island dissolution and metallosupramolecular self-assembly could be monitored in situ. Complementary first-principles calculations were performed to analyze the underlying driving forces and to examine general trends in 2D metal-carboxylate formation. The findings indicate the wide applicability of coordination chemistry concepts at surfaces, which moreover can be spatially confined by using templated substrates, and its potential to synthesize arrangements unavailable in bulk materials.

Observation of Hierarchical Chiral Structures in 8-Nitrospiropyran Monolayers

The adsorption and self-organization of racemic mixture of 8-nitrospiropyran (SP8) molecules on Au(111) surfaces was studied by scanning tunneling microscopy (STM) in ultrahigh vacuum (UHV). The SP8 enantiomers, in spite of their low-symmetric and nonplanar molecular structures, formed well-ordered monolayers on Au(111). In the monolayers, we found two types of enantiomorphous, i.e., mirror-imaged, 2D chiral domains, denoted as lambda and delta phases. Both phases consist of periodically packed chiral quatrefoils. In the lambda domain, the quatrefoils are counterclockwise folded, while in the delta domain, the quatrefoils are clockwise folded. High-resolution STM images revealed that each chiral quatrefoil contains four heterochiral dimers and that each dimer is composed of two antiparallelly packed homochiral SP8 molecules. Therefore both of the two mirror-imaged 2D chiral structures are not chirally pure but racemic 2D crystals. A domain boundary, which serves as the glide reflection line between a lambda domain and a delta domain, was also observed along the [11] direction of the Au(111) substrate.

Chiral Separation: Mechanism Modeling in Two-Dimensional Systems

Fluid phase separations of racemates are difficult because the subtle, short-ranged differences in intermolecular interactions of like and unlike pairs of chiral molecules are typically smaller than the thermal energy. A surface restricts the configurational space available to the pair of interacting molecules, thus changing the effective interactions between them. Because of this restriction, a surface can promote chiral separation of mixtures that are racemic in bulk. In this paper, we investigate chiral symmetry breaking induced by an achiral surface in a racemate. A parallel tempering Monte Carlo algorithm with tempering over the temperature domain is used to examine the interplay between molecular geometry and energetics in promoting chiral separations. The system is restricted to evolve in two dimensions. By controlling the balance between electrostatic and steric interactions, one can direct the surface assembly of the chiral molecules toward formation of small clusters of identical molecules. When molecular shape asymmetry is complemented by dipolar alignment, chiral micellar clusters of like molecules are assembled on the surface. We examine the case of small model molecules for which the two-dimensional restriction of the pair potential is sufficient to induce chiral segregation. An increase in molecular complexity can change the balance of intermolecular interactions to the point that heterochiral pairs are energetically more favored. In this case, we find conditions in which formation of homochiral micelles is still achieved, due to a combination of multibody and entropic effects. In such systems, an examination of the pair potential alone is insufficient to predict whether the multimolecular racemate will or will not segregate.

Spontaneous resolution, whence and whither: from enantiomorphic solids to chiral liquid crystals, monolayers and macro- and supra-molecular polymers and assemblies

One of the great challenges in stereochemistry is the explanation of why some molecules resolve spontaneously while others do not. In this critical review the recent advances in the creation of chiral systems from achiral and racemic compounds in three-, two- and one-dimensional systems are discussed. There are some groups of molecules in some systems that do tend to display conglomerates, which may suggest that there are enantiophobic and enantiophilic molecules whose assembly is guided by the structural and thermodynamic properties of the systems in question.

Surface-Template Assembly of Two-Dimensional Metal−Organic Coordination Networks

The self-assembly of iron-coordinated two-dimensional metal-organic networks on a Cu(100) surface has been investigated by scanning tunneling microscopy under ultra-high-vacuum conditions. We applied three rodlike polybenzene dicarboxylic acid molecules with different backbone lengths as organic linkers. The three linker molecules form topologically identical rectangular networks with Fe, all comprising iron pairs as the network nodes. Whereas the length of the linker molecules defines the dimension of the networks, the substrate also significantly influences the structural details, e.g., network orientation with respect to the substrate, geometric shape of the network cavities, Fe-carboxylate coordination configuration, and iron-iron distance.

Asymmetry Induction by Cooperative Intermolecular Hydrogen Bonds in Surface-Anchored Layers of Achiral Molecules

The mesoscale induction of two-dimensional supramolecular chirality (formation of 2D organic domains with a single handedness) was achieved by self-assembly of 1,2,4-benzenetricarboxylic (trimellitic) acid on a Cu(100) surface at elevated temperatures. The combination of spectroscopic [X-ray photoelectron spectroscopy (XPS) and near-edge X-ray absorption fine structure (NEXAFS)], real-space-probe [scanning tunneling microscopy (STM)], and computational [density functional theory (DFT)] methods allows a comprehensive characterization of the obtained organic adlayers, where details of molecular adsorption geometry, intermolecular coupling, and surface chemical bonding are elucidated. The trimellitic acid species, comprising three functional carboxylic groups, form distinct stable mirror-symmetric hydrogen-bonded domains. The chiral ordering is associated with conformational restriction in the domains: molecules anchor to the substrate with an ortho carboxylate group, providing two para carboxylic acid moieties for collective lateral interweaving through H bonding, which induces a specific tilt of the molecular plane. The ease of molecular symmetry switching in domain formation makes homochiral-signature propagation solely limited by the terrace width. The molecular layer modifies the morphology of the underlying copper substrate and induces mum-sized strictly homochiral terraces.

C60 on SiC Nanomesh

A SiC nanomesh is used as a nanotemplate to direct the epitaxy of C60 molecules. The epitaxial growth of C60 molecules on SiC nanomesh at room temperature is investigated by in situ scanning tunneling microscopy, revealing a typical Stranski-Krastanov mode (i.e., for the first one or two monolayers, it is a layer-by-layer growth or 2-D nucleation mode; at higher thicknesses, it changes to island growth or a 3-D nucleation mode). At submonolayer (0.04 and 0.2 ML) coverage, C60 molecules tend to aggregate to form single-layer C60 islands that mainly decorate terrace edges, leaving the uncovered SiC nanomesh almost free of C60 molecules. At 1 ML C60 coverage, a complete wetting layer of hexagonally close-packed C60 molecules forms on top of the SiC nanomesh. At higher coverage from 4.5 ML onward, the C60 stacking adopts a (111) oriented face-centered-cubic (fcc) structure. Strong bright and dim molecular contrasts have been observed on the first layer of C60 molecules, which are proposed to originate from electronic effects in a single-layer C60 island or the different coupling of C60 molecules to SiC nanomesh. These STM molecular contrast patterns completely disappear on the second and all the subsequent C60 layers. It is also found that the nanomesh can be fully recovered by annealing the C60/SiC nanomesh sample at 200 degrees C for 20 min.

The Molecular Basis of Self-Assembly of Dendron–Rod–Coils into One-Dimensional Nanostructures

We describe here a comprehensive study of solution and solid-state properties of self-assembling triblock molecules composed of a hydrophilic dendron covalently linked to an aromatic rigid rod segment, which is in turn connected to a hydrophobic flexible coil. These dendron-rod-coil (DRC) molecules form well-defined supramolecular structures that possess a ribbonlike morphology as revealed by transmission-electron and atomic-force microscopy. In a large variety of aprotic solvents, the DRC ribbons create stable networks that form gels at concentrations as low as 0.2% by weight DRC. The gels are thermally irreversible and do not melt at elevated temperatures, indicating high stability as a result of strong noncovalent interactions among DRC molecules. NMR experiments show that the strong interactions leading to aggregation involve mainly the dendron and rodlike blocks, whereas oligoisoprene coil segments remain solvated after gelation. Small-angle X-ray scattering (SAXS) profiles of different DRC molecules demonstrate an excellent correlation between the degree-of-order in the solid-state and the stability of gels. Studies on two series of analogous molecules suggest that self-assembly is very sensitive to subtle structural changes and requires the presence of at least four hydroxyl groups in the dendron, two biphenyl units in the rod, and a coil segment with a size comparable to that of the rodlike block. A detailed analysis of crystal structures of model compounds revealed the formation of stable one-dimensional structures that involve two types of noncovalent interactions, aromatic pi-pi stacking and hydrogen bonding. Most importantly, the crystal structure of the rod-dendron compound shows that hydrogen bonding not only drives the formation of head-to-head cyclic structures, but also generates multiple linkages between them along the stacking direction. The cyclic structures are tetrameric in nature and stack into ribbonlike objects. We believe that DRC molecules utilize the same arrangement of hydrogen bonds and stacking of aromatic blocks observed in the crystals, explaining the exceptional stability of the nanostructures in extremely dilute solutions as well the thermal stability of the gels they form. This study provides mechanistic insights on self-assembly of triblock molecules, and unveils general strategies to create well-defined one-dimensional supramolecular objects.

Morphosynthesis of Hierarchical Hydrozincite with Tunable Surface Architectures and Hollow Zinc Oxide

Hydrozincite (Zn5(CO3)2(OH)6) microspheres with a tunable surface architecture have been successfully synthesized via a homogeneous precipitation method under solvothermal conditions. For a smooth hydrozincite microsphere, various building blocks such as nanocubes, nanorods, and nanosheets are arranged to cover a spherical surface by concisely controlling reaction time and the volume of ethylene glycol. Hexagonal Zn5(CO3)2(OH)6 with nanostep structures are also prepared without any additives. The hollow ZnO microspheres with a porous surface have been successfully fabricated via a solution-based method by the room-temperature treatment of filled Zn5(CO3)2(OH)6 microspheres composed of nanocubes. A possible growth mechanism of these hollow ZnO microspheres is proposed. The similar filled ZnO microspheres can also be obtained by a direct pyrolysis of Zn5(CO3)2(OH)6 microspheres composed of nanocubes at 450 degrees C.

Self-assembly and conformation of tetrapyridyl-porphyrin molecules on Ag(111)

We present a low-temperature scanning tunneling microscopy (STM) study on the supramolecular ordering of tetrapyridyl-porphyrin (TPyP) molecules on Ag(111). Vapor deposition in a wide substrate temperature range reveals that TPyP molecules easily diffuse and self-assemble into large, highly ordered chiral domains. We identify two mirror-symmetric unit cells, each containing two differently oriented molecules. From an analysis of the respective arrangement it is concluded that lateral intermolecular interactions control the packing of the layer, while its orientation is induced by the coupling to the substrate. This finding is corroborated by molecular mechanics calculations. High-resolution STM images recorded at 15 K allow a direct identification of intramolecular features. This makes it possible to determine the molecular conformation of TPyP on Ag(111). The pyridyl groups are alternately rotated out of the porphyrin plane by an angle of 60 degrees.

Structural Comparison of Self-Organized Adlayers of Ligands and Their Metal-Coordinated Complexes on a Au(111) Surface: An STM Study

Scanning tunneling microscopy (STM) was employed to investigate the adsorption of the linear-spacer-bridged ligands bis(pyrrol-2-yl-methyleneamine) (BPMB and BPMmB), and their Zn(II)-coordinated complexes, BPMB/Zn(II) and BPMmB/Zn(II), onto a Au(111) surface in 0.1 M HClO(4) solution. Both the ligands, with different spacer bridges, and their Zn(II) complexes adsorb onto the Au(111) surface and self-organize into highly ordered two-dimensional arrays. The complexes BPMB/Zn(II) and BPMmB/Zn(II) appear in helical and triangular conformations, respectively, consistent with their chemical structures. Although the metal complexes include ligands, the assembled structures and adlayer symmetries of the ligands and complexes are totally different. The structures and intramolecular features obtained by high-resolution STM imaging are discussed. The results should be important in fabricating surface supramolecular structures.

Surface-assisted coordination chemistry and self-assembly

This article discusses different approaches to build up supramolecular nanoarchitectures on surfaces, which were simultaneously investigated by scanning tunneling microscopy (STM) on the single-molecule level. Following this general road map, first, the hydrogen-bonding guided self-assembly of two different, structural-equivalent molecular building blocks, azobenzene dicarboxylic acid and stilbene dicarboxylic acid, was studied. Secondly, the coordination chemistry of the same building blocks, now acting as ligands in metal coordination reactions, towards co-sublimed Fe atoms was studied under near surface-conditions. Extended two-dimensional tetragonal network formation with unusual Fe2L(4/2)-dimers at the crossing points was observed on copper surfaces. Complementary to the first two experiments, a two-step approach based on the solution-based self-assembly of square-like tetranuclear complexes of the M4L4-type with subsequent deposition on graphite surfaces was investigated. One- and two-dimensional arrangements as well as single molecules of the M4L4-complexes could be observed. Moreover, the local electronic properties of a single M4L4-complexes could be probed with submolecular resolution by means of scanning tunnelling spectroscopy (STS).

Non-covalent binding of fullerenes and biomolecules at surface-supported metallosupramolecular receptors

In-situ scanning tunneling microscopy study reveals that two-dimensional metallosupramolecular receptors bind a single or a discrete number of cystine, C60, or diphenylalanine molecules reversibly through non-covalent interactions.

Chiral symmetry breaking in two-dimensional C60-ACA intermixed systems

We have demonstrated a method for fabricating C60 overlayers with controlled spacing and chirality by reactive coadsorption with the aromatic molecule acridine-9-carboxylic acid (ACA). Structural control is achieved by the mismatched symmetries of the coadsorbates, as well as specific intermolecular and adsorbate-substrate interactions. The resulting supramolecular structure has a C60 period nearly three times as large as the normal C60 2D packing of 1 nm and exists in enantiopure domains with robust chirality.

Engineering atomic and molecular nanostructures at surfaces

The fabrication methods of the microelectronics industry have been refined to produce ever smaller devices, but will soon reach their fundamental limits. A promising alternative route to even smaller functional systems with nanometre dimensions is the autonomous ordering and assembly of atoms and molecules on atomically well-defined surfaces. This approach combines ease of fabrication with exquisite control over the shape, composition and mesoscale organization of the surface structures formed. Once the mechanisms controlling the self-ordering phenomena are fully understood, the self-assembly and growth processes can be steered to create a wide range of surface nanostructures from metallic, semiconducting and molecular materials.

Supramolecular nanostructures of 1,3,5-benzene-tricarboxylic acid at electrified Au(111)/0.05 M H2SO4 interfaces: an in situ scanning tunneling microscopy study

The potential-induced adsorption and self-assembly of 1,3,5-benzene-tricarboxylic acid (TMA) was investigated at the electrified Au(111)/0.05 M H2SO4 interface by in-situ scanning tunneling microscopy (STM) and surface enhanced infrared reflection absorption spectroscopy (SEIRAS) in combination with electrochemical techniques. Depending on the applied electric field, TMA forms five distinctly different, highly ordered supramolecular adlayers on Au(111) surfaces. We have elucidated their real-space structures at the molecular scale. In the potential range -0.25 V < E < 0.20 V, planar-oriented TMA molecules form a hexagonal open-ring honeycomb structure, Ia, a hydrogen-bonded ribbon-type phase, Ib, and a herringbone-type phase, Ic, stabilized by directional hydrogen bonding and weak substrate-adsorbate interactions. Interfacial water molecules are being replaced. In 0.20 V < or = E < 0.40 V, e.g., around the potential of zero charge, and at slightly higher coverages, a close-packed physisorbed adlayer of hydrogen-bonded TMA dimers, II, was observed. Further increase of the electrode potential to positive charge densities causes an orientation change from planar to upright. An initially disordered phase, IIIa, transforms into an ordered, stripelike chemisorbed adlayer, IIIb, of perpendicularly oriented TMA molecules. One carboxylate group per molecule is bound to the electrode surface, while the two other protonated carboxyl groups are directed toward the electrolyte and act as structure-determining components of a hydrogen-bonded two-dimensional ladder-type network. Structural transitions between the various types of ordered molecular adlayers are attributed to (hole) nucleation and growth processes.

Losing the expression of molecular chirality in self-assembled physisorbed monolayers

STM imaging on graphite of the S-enantiomer of a chiral diacetylene isophthalic acid derivative reveals that molecular chirality is not expressed in the monolayer due to a specific molecular conformation preventing the stereogenic center to transfer its chiral information.

Chiral Phase Transition in Two-Dimensional Supramolecular Assemblies of Prochiral Molecules

The self-assembly of the rodlike two-dimensional chiral molecule 4-[trans-2-(pyrid-4-yl-vinyl)] benzoic acid on the Cu(100) surface has been investigated by scanning tunneling microscopy. Upon adsorption at T>or=300 K, the molecules are deprotonated and assemble in parquet patterns when the coverage remains below a critical value. Corresponding high-resolution data reveal that the ordering implies mesoscopic chiral resolution as a result of chiroselective interactions (i.e., two domains comprise exclusively one enantiomer). When the critical coverage is exceeded, an abrupt transition to a single racemic phase is observed with a different lateral molecular coupling scheme. The shifting of the subtle balance between the weak lateral coupling, substrate bonding, and the packing requirements encountered with the increased molecular coverage is suggested to be the driving force for this homochiral-to-heterochiral phase transition.

Programming supramolecular assembly and chirality in two-dimensional dicarboxylate networks on a Cu(100) surface

We report a comparative study on the 2D self-assembly of two related ditopic benzoic acid species, which have similar shape and endgroups but different backbone symmetry. High-resolution scanning tunneling microscopy data reveal how the symmetry information of molecular building blocks is readily expressed in the resulting chiral or nonchiral supramolecular networks. The underlying square Cu(100) surface steers network orientation and accounts for carboxylate formation, resulting in an unusual intermolecular hydrogen bond motif. Our results demonstrate that symmetry and chiral resolution in 2D supramolecular assembly can be controlled via the design of functional molecules and choice of substrate.

Manipulating 2D metal–organic networks via ligand control

High-resolution scanning tunneling microscopy has revealed how ligand control can be successfully employed to eliminate isomeric phases and defects in 2D coordination networks that are self-assembled at a surface support by replacing symmetric dicarboxylato linker ligands to dissymmetric carboxylpyridyl linker ligands.

Nanoparticle dispersion on reconstructed carbon nanomeshes

A nanoporous template which can be used for the preparation of monodispersed metal nanoparticles can have wide-ranging applications in the catalyzed growth of single-walled nanotubes, as well as the preparation of energetic, nanostructured ferromagnetic particle arrays. Here, we found that a honeycomb-like carbon nanomesh with periodically arranged pores of approximately 2-nm dimension could be fabricated on the reconstructed 6H-SiC(0001) surface. The carbon nanomesh arises from the periodic arrangement of segregated carbon clusters on the 6H-SiC surface to form a highly regular, nanoporous film. The carbon nanomesh can be dynamically structured to control the periodicity and depth of the pores by annealing in a vacuum. We evaporated cobalt on the surface of the nanomesh and investigated the diffusion and agglomeration behavior of cobalt clusters using in situ scanning tunneling microscopy. It is found that monodispersed Co nanoclusters that resist aggregation up to a temperature of 500 degrees C can be fabricated on this template.

Expression of molecular chirality and two-dimensional supramolecular self-assembly of chiral, racemic, and achiral monodendrons at the liquid-solid interface

We have investigated the two-dimensional ordering of chiral and achiral monodendrons at the liquid-solid interface. The chiral molecules self-assemble into extended arrays of dimers. As expected, the R enantiomer forms the mirror image type pattern of the chiral two-dimensional structure formed by the S enantiomer. A racemic mixture applied from solution onto the substrate undergoes spontaneous segregation: the enantiomers separate on the surface and appear in different domains. In contrast to the chiral molecules, the achiral analogue self-assembles into cyclic tetramers. Moreover, the pattern formed by the achiral molecule strongly depends on the solvent used. In the case of 1-phenyloctane, solvent molecules are coadsorbed in a 2:1 (dendron:solvent) ratio whereas in 1-octanol, no solvent molecules are coadsorbed. By the appropriate solvent choice, the distance between the potential "supramolecular containers" can be influenced.

Design of extended surface-supported chiral metal-organic arrays comprising mononuclear iron centers

A design strategy for fabricating a surface-supported chiral metal-organic system comprising a regular arrangement of mononuclear iron centers and nanocavities is presented. By sequential deposition of 1,2,4-benzenetricarboxylic acid (tmla) molecules and iron atoms on a Cu(100) surface under ultrahigh vacuum conditions, chiral square-planar Fe(tmla)4 metal-organic complexes are generated, which order in extended homochiral arrays. Structure formation and envisioned functionality of such metal-organic architectures are discussed.

Geometry and conformation of benzenecarboxylic acids

The geometry, conformations and energy of mono-, di-, and tri-carboxylic derivatives of benzene were studied by means of the AM1 molecular-orbital method. Whereas the species having no carboxylic groups in the ortho-position (benzoic, isophthalic, terephthalic, and trimesic acids) are planar in all their (stable) conformations, those possessing carboxylic groups in the ortho-position (phthalic, 1,2,3-benzenetricarboxylic, and 1,2,4-benzenetricarboxylic acids) assume a non-planar geometry, with one carboxyl group almost orthogonal to the plane of the benzene ring. Various rotamers of each of the studied benzenecarboxylic acids have nearly the same energy.