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For: Katoh K, Standley DM. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics 2016;32:1933-42. [PMID: 27153688 PMCID: PMC4920119 DOI: 10.1093/bioinformatics/btw108] [Citation(s) in RCA: 360] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 02/19/2016] [Indexed: 12/17/2022]  Open
Number Cited by Other Article(s)
101
Xu RJ, Zhu YA, Liu NG, Boonmee S, Zhou DQ, Zhao Q. Taxonomy and Phylogeny of Hyphomycetous Muriform Conidial Taxa from the Tibetan Plateau, China. J Fungi (Basel) 2023;9:jof9050560. [PMID: 37233273 DOI: 10.3390/jof9050560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 05/10/2023] [Accepted: 05/11/2023] [Indexed: 05/27/2023]  Open
102
Mantelatto FL, Paixão JM, Robles R, Teles JN, Balbino FC. Evidence using morphology, molecules, and biogeography clarifies the taxonomic status of mole crabs of the genus Emerita Scopoli, 1777 (Anomura, Hippidae) and reveals a new species from the western Atlantic. Zookeys 2023;1161:169-202. [PMID: 37234742 PMCID: PMC10206660 DOI: 10.3897/zookeys.1161.99432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 04/10/2023] [Indexed: 05/28/2023]  Open
103
Lencina MM, Truyen U, de Oliveira Santana W, Kipper D, Delamare APL, Paesi S, Lunge VR, Streck AF. Canine parvovirus type 2 vaccines in Brazil: Viral load in commercial vaccine vials and phylogenetic analysis of the vaccine viruses. Biologicals 2023;82:101676. [PMID: 37028214 DOI: 10.1016/j.biologicals.2023.101676] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 12/17/2022] [Accepted: 03/22/2023] [Indexed: 04/08/2023]  Open
104
Lemire BD, Uppuluri P. Coding Sequence Insertions in Fungal Genomes are Intrinsically Disordered and can Impart Functionally-Important Properties on the Host Protein. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.06.535715. [PMID: 37066283 PMCID: PMC10104129 DOI: 10.1101/2023.04.06.535715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/18/2023]
105
Booher DB, Gotelli NJ, Nelsen MP, Ohyama L, Deyrup M, Moreau CS, Suarez AV. Six decades of museum collections reveal disruption of native ant assemblages by introduced species. Curr Biol 2023;33:2088-2094.e6. [PMID: 37030293 DOI: 10.1016/j.cub.2023.03.044] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 02/01/2023] [Accepted: 03/15/2023] [Indexed: 04/10/2023]
106
Zhang C, Liu X, Shi LD, Li J, Xiao X, Shao Z, Dong X. Unexpected genetic and microbial diversity for arsenic cycling in deep sea cold seep sediments. NPJ Biofilms Microbiomes 2023;9:13. [PMID: 36991068 PMCID: PMC10060404 DOI: 10.1038/s41522-023-00382-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Accepted: 03/13/2023] [Indexed: 03/31/2023]  Open
107
Wang B, Qin B, Sun K, Huang X, Bai S, Zhou X. The complete chloroplast genome sequence of Bambusa tuldoides f. swolleninternode (Poaceae: Bambuseae). Mitochondrial DNA B Resour 2023;8:324-328. [PMID: 36860478 PMCID: PMC9970254 DOI: 10.1080/23802359.2023.2181648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]  Open
108
Zhang C, Fang YX, Yin X, Lai H, Kuang Z, Zhang T, Xu XP, Wegener G, Wang JH, Dong X. The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules. MICROBIOME 2023;11:37. [PMID: 36864529 PMCID: PMC9979476 DOI: 10.1186/s40168-023-01482-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 01/30/2023] [Indexed: 06/01/2023]
109
Dudka D, Akins RB, Lampson MA. FREEDA: an automated computational pipeline guides experimental testing of protein innovation by detecting positive selection. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.27.530329. [PMID: 36909479 PMCID: PMC10002610 DOI: 10.1101/2023.02.27.530329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
110
Mao J, Liang Y, Wang X, Zhang D. Comparison of plastid genomes and ITS of two sister species in Gentiana and a discussion on potential threats for the endangered species from hybridization. BMC PLANT BIOLOGY 2023;23:101. [PMID: 36800941 PMCID: PMC9940437 DOI: 10.1186/s12870-023-04088-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 01/25/2023] [Indexed: 06/18/2023]
111
Li GJ, Liu TZ, Li SM, Zhao SY, Niu CY, Liu ZZ, Xie XJ, Zhang X, Shi LY, Guo YB, Wang K, Cao B, Zhao RL, Li M, Deng CY, Wei TZ. Four New Species of Russula Subsection Sardoninae from China. J Fungi (Basel) 2023;9:jof9020199. [PMID: 36836313 PMCID: PMC9963349 DOI: 10.3390/jof9020199] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 01/23/2023] [Accepted: 01/31/2023] [Indexed: 02/09/2023]  Open
112
Huang H, Hua X, Pang X, Zhang Z, Ren J, Cheng J, Fu Y, Xiao X, Lin Y, Chen T, Li B, Liu H, Jiang D, Xie J. Discovery and Characterization of Putative Glycoprotein-Encoding Mycoviruses in the Bunyavirales. J Virol 2023;97:e0138122. [PMID: 36625579 PMCID: PMC9888262 DOI: 10.1128/jvi.01381-22] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 11/16/2022] [Indexed: 01/11/2023]  Open
113
Singh P, Sharma K, Shaw D, Bhargava A, Negi SS. Mutational characterization of Omicron SARS-CoV-2 lineages circulating in Chhattisgarh, a central state of India. Front Med (Lausanne) 2023;9:1082846. [PMID: 36755883 PMCID: PMC9899822 DOI: 10.3389/fmed.2022.1082846] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 12/30/2022] [Indexed: 01/24/2023]  Open
114
Coates BS, Walden KKO, Lata D, Vellichirammal NN, Mitchell RF, Andersson MN, McKay R, Lorenzen MD, Grubbs N, Wang YH, Han J, Xuan JL, Willadsen P, Wang H, French BW, Bansal R, Sedky S, Souza D, Bunn D, Meinke LJ, Miller NJ, Siegfried BD, Sappington TW, Robertson HM. A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect. BMC Genomics 2023;24:19. [PMID: 36639634 PMCID: PMC9840275 DOI: 10.1186/s12864-022-08990-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 11/04/2022] [Indexed: 01/15/2023]  Open
115
Yang F, Feng C, Long L. The complete chloroplast genome of the marine microalga Nitzschia dubiiformis. Mitochondrial DNA B Resour 2023;8:91-94. [PMID: 36643815 PMCID: PMC9833402 DOI: 10.1080/23802359.2022.2160672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
116
Wang T, Li Y, Ma Q, Liu Y, Xiao Y, Wu P, Lin L, Li C. The complete mitochondrial genome of Cheilinus trilobatus (Perciformes: Labridae). Mitochondrial DNA B Resour 2023;8:73-75. [PMID: 36620319 PMCID: PMC9815225 DOI: 10.1080/23802359.2022.2161835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
117
Yang F, Huang Y, Long L. Characterization of the chloroplast genome of Symbiochlorum hainanensis (Ulvophyceae, Chlorophyta) and its phylogenetic analysis. Mitochondrial DNA B Resour 2023;8:422-425. [PMID: 36998784 PMCID: PMC10044315 DOI: 10.1080/23802359.2023.2183722] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/01/2023]  Open
118
O'Grady HM, Harrison R, Snedeker K, Trufen L, Yue P, Ward L, Fifen A, Jamieson P, Weiss A, Coulthard J, Lynch T, Croxen MA, Li V, Pabbaraju K, Wong A, Zhou HY, Dingle TC, Hellmer K, Berenger BM, Fonseca K, Lin YC, Evans D, Conly JM. A two-ward acute care hospital outbreak of SARS-CoV-2 delta variant including a point-source outbreak associated with the use of a mobile vital signs cart and sub-optimal doffing of personal protective equipment. J Hosp Infect 2023;131:1-11. [PMID: 36195200 PMCID: PMC9527227 DOI: 10.1016/j.jhin.2022.09.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 09/16/2022] [Accepted: 09/27/2022] [Indexed: 01/25/2023]
119
Townley IK, Babin CH, Murphy TE, Summa CM, Rees BB. Genomic analysis of hypoxia inducible factor alpha in ray-finned fishes reveals missing Ohnologs and evidence of widespread positive selection. Sci Rep 2022;12:22312. [PMID: 36566251 PMCID: PMC9789988 DOI: 10.1038/s41598-022-26876-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 12/20/2022] [Indexed: 12/25/2022]  Open
120
Taxonomy and Multigene Phylogeny of Diaporthales in Guizhou Province, China. J Fungi (Basel) 2022;8:jof8121301. [PMID: 36547633 PMCID: PMC9785342 DOI: 10.3390/jof8121301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Revised: 12/08/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022]  Open
121
Rizzo D, Bracalini M, Campigli S, Nencioni A, Porcelli F, Marchi G, Da Lio D, Bartolini L, Rossi E, Sacchetti P, Panzavolta T. Quantitative Real-Time PCR Based on SYBR Green Technology for the Identification of Philaenus italosignus Drosopoulos & Remane (Hemiptera Aphrophoridae). PLANTS (BASEL, SWITZERLAND) 2022;11:3314. [PMID: 36501353 PMCID: PMC9741283 DOI: 10.3390/plants11233314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/21/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
122
Sun JE, Zhang Q, Luo WM, Yang YQ, An HM, Wang Y. Four new Phragmidium (Phragmidiaceae, Pucciniomycetes) species from Rosaceae plants in Guizhou Province of China. MycoKeys 2022;93:193-213. [PMID: 36761909 PMCID: PMC9836481 DOI: 10.3897/mycokeys.93.90861] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 10/26/2022] [Indexed: 11/12/2022]  Open
123
Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov. Int J Syst Evol Microbiol 2022;72. [DOI: 10.1099/ijsem.0.005636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]  Open
124
Fu YT, Suleman, Yao C, Wang HM, Wang W, Liu GH. A Novel Mitochondrial Genome Fragmentation Pattern in the Buffalo Louse Haematopinus tuberculatus (Psocodea: Haematopinidae). Int J Mol Sci 2022;23:13092. [PMID: 36361879 PMCID: PMC9658350 DOI: 10.3390/ijms232113092] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/08/2022] [Accepted: 10/25/2022] [Indexed: 08/01/2023]  Open
125
Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers. mSystems 2022;7:e0152221. [PMID: 35972150 PMCID: PMC9599517 DOI: 10.1128/msystems.01522-21] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
126
Chen JH, Hu DM, Song HY, Zhai ZJ, Lai L, Lin KH. Menisporopsisaquatica sp. nov. (Sordariomycetes, Chaetosphaeriales, Chaetosphaeriaceae), from freshwater habitat in China. Biodivers Data J 2022;10:e91008. [PMID: 36761619 PMCID: PMC9836606 DOI: 10.3897/bdj.10.e91008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 10/02/2022] [Indexed: 11/12/2022]  Open
127
Alam MM, Mavian C, Okech BA, White SK, Stephenson CJ, Elbadry MA, Blohm GM, Loeb JC, Louis R, Saleem C, Madsen Beau de Rochars VE, Salemi M, Lednicky JA, Morris JG. Analysis of Zika Virus Sequence Data Associated with a School Cohort in Haiti. Am J Trop Med Hyg 2022;107:873-880. [PMID: 36096408 PMCID: PMC9651511 DOI: 10.4269/ajtmh.22-0204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 05/11/2022] [Indexed: 11/07/2022]  Open
128
Kämpfer P, Glaeser SP, Lipski A, McInroy JA, Clermont D, Criscuolo A. Sutcliffiella rhizosphaerae sp. nov. isolated from roots. Int J Syst Evol Microbiol 2022;72. [DOI: 10.1099/ijsem.0.005590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
129
Xing ZP, Liang X, Wang X, Hu HY, Huang YX. Novel gene rearrangement pattern in mitochondrial genome of Ooencyrtusplautus Huang & Noyes, 1994: new gene order in Encyrtidae (Hymenoptera, Chalcidoidea). Zookeys 2022;1124:1-21. [PMID: 36762364 PMCID: PMC9836654 DOI: 10.3897/zookeys.1124.83811] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 09/14/2022] [Indexed: 11/12/2022]  Open
130
Biesiada M, Hu MY, Williams LD, Purzycka KJ, Petrov AS. rRNA expansion segment 7 in eukaryotes: from Signature Fold to tentacles. Nucleic Acids Res 2022;50:10717-10732. [PMID: 36200812 PMCID: PMC9561286 DOI: 10.1093/nar/gkac844] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 09/13/2022] [Accepted: 09/22/2022] [Indexed: 11/14/2022]  Open
131
Huang YX, Xing ZP, Zhang H, Xu ZB, Tao LL, Hu HY, Kitching IJ, Wang X. Characterization of the Complete Mitochondrial Genome of Eight Diurnal Hawkmoths (Lepidoptera: Sphingidae): New Insights into the Origin and Evolution of Diurnalism in Sphingids. INSECTS 2022;13:887. [PMID: 36292835 PMCID: PMC9604448 DOI: 10.3390/insects13100887] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 09/20/2022] [Accepted: 09/27/2022] [Indexed: 06/16/2023]
132
He YK, Yang Q, Sun YR, Zeng XY, Jayawardena RS, Hyde KD, Wang Y. Additions to Neopestalotiopsis (Amphisphaeriales, Sporocadaceae) fungi: two new species and one new host record from China. Biodivers Data J 2022;10:e90709. [PMID: 36761578 PMCID: PMC9848506 DOI: 10.3897/bdj.10.e90709] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 09/19/2022] [Indexed: 11/12/2022]  Open
133
Zhao Y, Qu D, Ma Y. Characterization of the Chloroplast Genome of Argyranthemum frutescens and a Comparison with Other Species in Anthemideae. Genes (Basel) 2022;13:genes13101720. [PMID: 36292605 PMCID: PMC9602088 DOI: 10.3390/genes13101720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/13/2022] [Accepted: 09/22/2022] [Indexed: 11/16/2022]  Open
134
Genome Sequence of Genotype 1A Hepatovirus A Isolated from Plasma from a Haitian Child. Microbiol Resour Announc 2022;11:e0044922. [PMID: 35950865 PMCID: PMC9476952 DOI: 10.1128/mra.00449-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
135
He H, Crabbe MJC, Ren Z. Detoxification Gene Families at the Genome-Wide Level of Rhus Gall Aphid Schlechtendalia chinensis. Genes (Basel) 2022;13:1627. [PMID: 36140795 PMCID: PMC9498883 DOI: 10.3390/genes13091627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/30/2022] [Accepted: 09/07/2022] [Indexed: 12/02/2022]  Open
136
Hendricks CM, Cash MN, Tagliamonte MS, Riva A, Brander C, Llano A, Salemi M, Stevenson M, Mavian C. Discordance between HIV-1 Population in Plasma at Rebound after Structured Treatment Interruption and Archived Provirus Population in Peripheral Blood Mononuclear Cells. Microbiol Spectr 2022;10:e0135322. [PMID: 35699458 PMCID: PMC9431602 DOI: 10.1128/spectrum.01353-22] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 05/07/2022] [Indexed: 11/20/2022]  Open
137
Dong X, Zhang C, Peng Y, Zhang HX, Shi LD, Wei G, Hubert CRJ, Wang Y, Greening C. Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments. Nat Commun 2022;13:4885. [PMID: 35985998 PMCID: PMC9391474 DOI: 10.1038/s41467-022-32503-w] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 08/03/2022] [Indexed: 11/16/2022]  Open
138
A novel fungal negative-stranded RNA virus related to mymonaviruses in Auricularia heimuer. Arch Virol 2022;167:2223-2227. [PMID: 35962823 DOI: 10.1007/s00705-022-05540-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Accepted: 06/09/2022] [Indexed: 11/02/2022]
139
Moreno-Villena JJ, Zhou H, Gilman IS, Tausta SL, Cheung CYM, Edwards EJ. Spatial resolution of an integrated C4+CAM photosynthetic metabolism. SCIENCE ADVANCES 2022;8:eabn2349. [PMID: 35930634 PMCID: PMC9355352 DOI: 10.1126/sciadv.abn2349] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Accepted: 06/22/2022] [Indexed: 05/27/2023]
140
Liao HZ, Sun MM, Zhou H, Liu X. Characterization of the complete chloroplast genome of Handroanthus chrysanthus (Bignoniaceae). Mitochondrial DNA B Resour 2022;7:1479-1480. [PMID: 35989880 PMCID: PMC9387335 DOI: 10.1080/23802359.2022.2102445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]  Open
141
T T Tsang C, Schubart CD, Hou Chu K, K L Ng P, Ming Tsang L. Molecular phylogeny of Thoracotremata crabs (Decapoda, Brachyura): toward adopting monophyletic superfamilies, invasion history into terrestrial habitats and multiple origins of symbiosis. Mol Phylogenet Evol 2022;177:107596. [PMID: 35914646 DOI: 10.1016/j.ympev.2022.107596] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 07/11/2022] [Accepted: 07/26/2022] [Indexed: 11/27/2022]
142
Wang SY, Wang Y, Li Y. Cladosporium spp. (Cladosporiaceae) isolated from Eucommiaulmoides in China. MycoKeys 2022;91:151-168. [PMID: 36760889 PMCID: PMC9849062 DOI: 10.3897/mycokeys.91.87841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 07/04/2022] [Indexed: 11/12/2022]  Open
143
Kämpfer P, Lipski A, McInroy JA, Clermont D, Criscuolo A, Glaeser SP. Bacillus rhizoplanae sp. nov. from maize roots. Int J Syst Evol Microbiol 2022;72. [DOI: 10.1099/ijsem.0.005450] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
144
Chan-Martin ADJ, Castellanos-Martínez S, Aguirre-Macedo ML, Martínez-Aquino A. Immature trematodes of Lecithochirium sp. (Digenea: Hemiuridae) in the California two-spot octopus (Octopus bimaculatus) from Mexico. Parasitol Res 2022;121:2651-2660. [PMID: 35809128 DOI: 10.1007/s00436-022-07590-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 06/30/2022] [Indexed: 10/17/2022]
145
Méheust R, Castelle CJ, Jaffe AL, Banfield JF. Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups. BMC Biol 2022;20:154. [PMID: 35790962 PMCID: PMC9258230 DOI: 10.1186/s12915-022-01348-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 06/09/2022] [Indexed: 11/10/2022]  Open
146
Qin B, Sun K, Huang X. The complete chloroplast genome of Lagerstroemia loudonii Teijsm. & Binn. (Lythraceae), an ornamental tree with medicinal value. Mitochondrial DNA B Resour 2022;7:1240-1242. [PMID: 35814173 PMCID: PMC9262357 DOI: 10.1080/23802359.2022.2093671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
147
Volland JM, Gonzalez-Rizzo S, Gros O, Tyml T, Ivanova N, Schulz F, Goudeau D, Elisabeth NH, Nath N, Udwary D, Malmstrom RR, Guidi-Rontani C, Bolte-Kluge S, Davies KM, Jean MR, Mansot JL, Mouncey NJ, Angert ER, Woyke T, Date SV. A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles. Science 2022;376:1453-1458. [PMID: 35737788 DOI: 10.1126/science.abb3634] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
148
Sequence analyses of mitochondrial gene may support the existence of cryptic species within Ascaridia galli. J Helminthol 2022;96:e39. [PMID: 35641879 DOI: 10.1017/s0022149x2200030x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
149
Genes and evolutionary fates of the amanitin biosynthesis pathway in poisonous mushrooms. Proc Natl Acad Sci U S A 2022;119:e2201113119. [PMID: 35533275 PMCID: PMC9171917 DOI: 10.1073/pnas.2201113119] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
150
Kämpfer P, Glaeser SP, Busse HJ, McInroy JA, Clermont D, Criscuolo A. Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere. Int J Syst Evol Microbiol 2022;72. [DOI: 10.1099/ijsem.0.005367] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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