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Number Cited by Other Article(s)
151
Satoh A, Takasu M, Yano K, Terai Y. De novo assembly and annotation of the mangrove cricket genome. BMC Res Notes 2021;14:387. [PMID: 34627387 PMCID: PMC8502352 DOI: 10.1186/s13104-021-05798-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Accepted: 09/27/2021] [Indexed: 11/10/2022]  Open
152
Zhang M, Zhang Y, Han X, Wang J, Yang Y, Ren B, Xia M, Li G, Fang R, He H, Jia Y. Whole genome sequencing of Enterobacter mori, an emerging pathogen of kiwifruit and the potential genetic adaptation to pathogenic lifestyle. AMB Express 2021;11:129. [PMID: 34533621 PMCID: PMC8448808 DOI: 10.1186/s13568-021-01290-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 09/03/2021] [Indexed: 11/10/2022]  Open
153
Draft Genome Sequence of Vibrio chagasii 18LP, Isolated from Gilthead Seabream (Sparus aurata) Larvae Reared in Aquaculture. Microbiol Resour Announc 2021;10:e0065821. [PMID: 34528822 PMCID: PMC8444970 DOI: 10.1128/mra.00658-21] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
154
Leinonen M, Salmela L. Extraction of long k-mers using spaced seeds. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;PP:1-1. [PMID: 34529572 DOI: 10.1109/tcbb.2021.3113131] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
155
De novo Assembly, Annotation, and Analysis of Transcriptome Data of the Ladakh Ground Skink Provide Genetic Information on High-Altitude Adaptation. Genes (Basel) 2021;12:genes12091423. [PMID: 34573405 PMCID: PMC8466045 DOI: 10.3390/genes12091423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 09/13/2021] [Accepted: 09/13/2021] [Indexed: 11/17/2022]  Open
156
You MP, Akhatar J, Mittal M, Barbetti MJ, Maina S, Banga SS. Comparative analysis of draft genome assemblies developed from whole genome sequences of two Hyaloperonospora brassicae isolate samples differing in field virulence on Brassica napus. BIOTECHNOLOGY REPORTS 2021;31:e00653. [PMID: 34258242 PMCID: PMC8254085 DOI: 10.1016/j.btre.2021.e00653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 05/28/2021] [Accepted: 06/16/2021] [Indexed: 11/25/2022]
157
Chong LC, Lim WL, Ban KHK, Khan AM. An Alignment-Independent Approach for the Study of Viral Sequence Diversity at Any Given Rank of Taxonomy Lineage. BIOLOGY 2021;10:biology10090853. [PMID: 34571730 PMCID: PMC8466476 DOI: 10.3390/biology10090853] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/13/2021] [Accepted: 08/19/2021] [Indexed: 11/16/2022]
158
Conservative and Atypical Ferritins of Sponges. Int J Mol Sci 2021;22:ijms22168635. [PMID: 34445356 PMCID: PMC8395497 DOI: 10.3390/ijms22168635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 08/05/2021] [Accepted: 08/07/2021] [Indexed: 12/26/2022]  Open
159
Fritz A, Bremges A, Deng ZL, Lesker TR, Götting J, Ganzenmueller T, Sczyrba A, Dilthey A, Klawonn F, McHardy AC. Haploflow: strain-resolved de novo assembly of viral genomes. Genome Biol 2021;22:212. [PMID: 34281604 PMCID: PMC8287296 DOI: 10.1186/s13059-021-02426-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 06/29/2021] [Indexed: 01/03/2023]  Open
160
Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. Using SPAdes De Novo Assembler. ACTA ACUST UNITED AC 2021;70:e102. [PMID: 32559359 DOI: 10.1002/cpbi.102] [Citation(s) in RCA: 1444] [Impact Index Per Article: 361.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
161
Alanko J, Alipanahi B, Settle J, Boucher C, Gagie T. Buffering updates enables efficient dynamic de Bruijn graphs. Comput Struct Biotechnol J 2021;19:4067-4078. [PMID: 34377371 PMCID: PMC8326735 DOI: 10.1016/j.csbj.2021.06.047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 06/29/2021] [Accepted: 06/29/2021] [Indexed: 12/24/2022]  Open
162
Estimation of Genome Size in the Endemic Species Reseda pentagyna and the Locally Rare Species Reseda lutea Using comparative Analyses of Flow Cytometry and K-Mer Approaches. PLANTS 2021;10:plants10071362. [PMID: 34371565 PMCID: PMC8309327 DOI: 10.3390/plants10071362] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 07/01/2021] [Accepted: 07/01/2021] [Indexed: 11/17/2022]
163
Valdebenito-Maturana B, Riadi G. GSER (a Genome Size Estimator using R): a pipeline for quality assessment of sequenced genome libraries through genome size estimation. Interface Focus 2021;11:20200077. [PMID: 34123359 DOI: 10.1098/rsfs.2020.0077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/13/2021] [Indexed: 01/07/2023]  Open
164
Heikema AP, Jansen R, Hiltemann SD, Hays JP, Stubbs AP. WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates. BMC Microbiol 2021;21:171. [PMID: 34098864 PMCID: PMC8186029 DOI: 10.1186/s12866-021-02225-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 05/13/2021] [Indexed: 11/10/2022]  Open
165
Alickovic L, Johnson KP, Boyd BM. The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse. BMC Ecol Evol 2021;21:108. [PMID: 34078265 PMCID: PMC8173840 DOI: 10.1186/s12862-021-01840-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 05/23/2021] [Indexed: 11/10/2022]  Open
166
Liu L, Tumi L, Suni ML, Arakaki M, Wang ZF, Ge XJ. Draft genome of Puya raimondii (Bromeliaceae), the Queen of the Andes. Genomics 2021;113:2537-2546. [PMID: 34089785 DOI: 10.1016/j.ygeno.2021.05.042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 05/16/2021] [Accepted: 05/31/2021] [Indexed: 01/20/2023]
167
Michell C, Wutke S, Aranda M, Nyman T. Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction. G3 (BETHESDA, MD.) 2021;11:jkab094. [PMID: 33788947 PMCID: PMC8104934 DOI: 10.1093/g3journal/jkab094] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 03/09/2021] [Indexed: 12/14/2022]
168
Duckett DJ, Sullivan J, Pirro S, Carstens BC. Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus). GIGABYTE 2021;2021:gigabyte19. [PMID: 36824326 PMCID: PMC9631978 DOI: 10.46471/gigabyte.19] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 05/04/2021] [Indexed: 11/09/2022]  Open
169
Compromised Function of the Pancreatic Transcription Factor PDX1 in a Lineage of Desert Rodents. J MAMM EVOL 2021. [DOI: 10.1007/s10914-021-09544-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
170
Islam R, Raju RS, Tasnim N, Shihab IH, Bhuiyan MA, Araf Y, Islam T. Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants. Brief Bioinform 2021;22:6210065. [PMID: 33822878 PMCID: PMC8083570 DOI: 10.1093/bib/bbab102] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 03/06/2021] [Accepted: 03/08/2021] [Indexed: 12/18/2022]  Open
171
Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals. Sci Rep 2021;11:7220. [PMID: 33790324 PMCID: PMC8012655 DOI: 10.1038/s41598-021-86454-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Accepted: 02/04/2021] [Indexed: 01/03/2023]  Open
172
Molecular organization of recombinant human-Arabidopsis chromosomes in hybrid cell lines. Sci Rep 2021;11:7160. [PMID: 33785802 PMCID: PMC8009911 DOI: 10.1038/s41598-021-86130-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 03/08/2021] [Indexed: 12/14/2022]  Open
173
Draft genome of the glucose tolerant β-glucosidase producing rare Aspergillus unguis reveals complete cellulolytic machinery with multiple beta-glucosidase genes. Fungal Genet Biol 2021;151:103551. [PMID: 33737204 DOI: 10.1016/j.fgb.2021.103551] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 02/24/2021] [Accepted: 03/07/2021] [Indexed: 11/20/2022]
174
Whole genome survey analysis and microsatellite motif identification of Sebastiscus marmoratus. Biosci Rep 2021;40:222120. [PMID: 32090250 PMCID: PMC7040462 DOI: 10.1042/bsr20192252] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 02/04/2020] [Accepted: 02/13/2020] [Indexed: 01/17/2023]  Open
175
Wang L, Niu D, Wang X, Khan J, Shen Q, Xue Y. A Novel Machine Learning Strategy for the Prediction of Antihypertensive Peptides Derived from Food with High Efficiency. Foods 2021;10:foods10030550. [PMID: 33800877 PMCID: PMC7999667 DOI: 10.3390/foods10030550] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 03/01/2021] [Accepted: 03/03/2021] [Indexed: 12/22/2022]  Open
176
Polonio Á, Díaz-Martínez L, Fernández-Ortuño D, de Vicente A, Romero D, López-Ruiz FJ, Pérez-García A. A Hybrid Genome Assembly Resource for Podosphaera xanthii, the Main Causal Agent of Powdery Mildew Disease in Cucurbits. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021;34:319-324. [PMID: 33141618 DOI: 10.1094/mpmi-08-20-0237-a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
177
Romey A, Lamglait B, Blanchard Y, Touzain F, Quenault H, Relmy A, Zientara S, Blaise-Boisseau S, Bakkali-Kassimi L. Molecular characterization of encephalomyocarditis virus strains isolated from an African elephant and rats in a French zoo. J Vet Diagn Invest 2021;33:313-321. [PMID: 33292091 PMCID: PMC7953090 DOI: 10.1177/1040638720978389] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
178
Silva R, Padovani K, Góes F, Alves R. geneRFinder: gene finding in distinct metagenomic data complexities. BMC Bioinformatics 2021;22:87. [PMID: 33632132 PMCID: PMC7905635 DOI: 10.1186/s12859-021-03997-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 02/04/2021] [Indexed: 12/01/2022]  Open
179
Apriyanto A, Tambunan VB. Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil. Data Brief 2021;34:106745. [PMID: 33537371 PMCID: PMC7843393 DOI: 10.1016/j.dib.2021.106745] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 12/30/2020] [Accepted: 01/08/2021] [Indexed: 11/19/2022]  Open
180
Huang H, Liang J, Tan Q, Ou L, Li X, Zhong C, Huang H, Møller IM, Wu X, Song S. Insights into triterpene synthesis and unsaturated fatty-acid accumulation provided by chromosomal-level genome analysis of Akebia trifoliata subsp. australis. HORTICULTURE RESEARCH 2021;8:33. [PMID: 33518712 PMCID: PMC7848005 DOI: 10.1038/s41438-020-00458-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 11/16/2020] [Accepted: 11/20/2020] [Indexed: 05/10/2023]
181
Meyer A, Schloissnig S, Franchini P, Du K, Woltering JM, Irisarri I, Wong WY, Nowoshilow S, Kneitz S, Kawaguchi A, Fabrizius A, Xiong P, Dechaud C, Spaink HP, Volff JN, Simakov O, Burmester T, Tanaka EM, Schartl M. Giant lungfish genome elucidates the conquest of land by vertebrates. Nature 2021;590:284-289. [PMID: 33461212 PMCID: PMC7875771 DOI: 10.1038/s41586-021-03198-8] [Citation(s) in RCA: 116] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 01/06/2021] [Indexed: 01/29/2023]
182
Fritz A, Bremges A, Deng ZL, Lesker TR, Götting J, Ganzenmüller T, Sczyrba A, Dilthey A, Klawonn F, McHardy A. Haploflow: Strain-resolved de novo assembly of viral genomes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2021:2021.01.25.428049. [PMID: 33532769 PMCID: PMC7852260 DOI: 10.1101/2021.01.25.428049] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
183
Kushwaha B, Pandey M, Das P, Joshi CG, Nagpure NS, Kumar R, Kumar D, Agarwal S, Srivastava S, Singh M, Sahoo L, Jayasankar P, Meher PK, Shah TM, Hinsu AT, Patel N, Koringa PG, Das SP, Patnaik S, Bit A, Iquebal MA, Jaiswal S, Jena J. The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breathing catfishes. DNA Res 2021;28:6070145. [PMID: 33416875 PMCID: PMC7934567 DOI: 10.1093/dnares/dsaa031] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 12/21/2020] [Indexed: 11/14/2022]  Open
184
Xue X, Suvorov A, Fujimoto S, Dilman AR, Adams BJ. Genome analysis of Plectus murrayi, a nematode from continental Antarctica. G3-GENES GENOMES GENETICS 2021;11:6044189. [PMID: 33561244 PMCID: PMC8022722 DOI: 10.1093/g3journal/jkaa045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 12/08/2020] [Indexed: 01/23/2023]
185
Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis. Nat Commun 2021;12:405. [PMID: 33452249 PMCID: PMC7810986 DOI: 10.1038/s41467-020-20508-2] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 12/07/2020] [Indexed: 01/29/2023]  Open
186
De-la-Cruz IM, Hallab A, Olivares-Pinto U, Tapia-López R, Velázquez-Márquez S, Piñero D, Oyama K, Usadel B, Núñez-Farfán J. Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae). Sci Rep 2021;11:882. [PMID: 33441607 PMCID: PMC7806989 DOI: 10.1038/s41598-020-79194-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 12/03/2020] [Indexed: 01/22/2023]  Open
187
Luhmann N, Holley G, Achtman M. BlastFrost: fast querying of 100,000s of bacterial genomes in Bifrost graphs. Genome Biol 2021;22:30. [PMID: 33430919 PMCID: PMC7798312 DOI: 10.1186/s13059-020-02237-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 12/11/2020] [Indexed: 12/30/2022]  Open
188
Carvalho R, Aburjaile F, Canario M, Nascimento AMA, Chartone-Souza E, de Jesus L, Zamyatnin AA, Brenig B, Barh D, Ghosh P, Goes-Neto A, Figueiredo HCP, Soares S, Ramos R, Pinto A, Azevedo V. Genomic Characterization of Multidrug-Resistant Escherichia coli BH100 Sub-strains. Front Microbiol 2021;11:549254. [PMID: 33584554 PMCID: PMC7874104 DOI: 10.3389/fmicb.2020.549254] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Accepted: 12/09/2020] [Indexed: 01/17/2023]  Open
189
Marchet C, Boucher C, Puglisi SJ, Medvedev P, Salson M, Chikhi R. Data structures based on k-mers for querying large collections of sequencing data sets. Genome Res 2021;31:1-12. [PMID: 33328168 PMCID: PMC7849385 DOI: 10.1101/gr.260604.119] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2019] [Accepted: 09/14/2020] [Indexed: 12/19/2022]
190
Comparative genomics with a multidrug-resistant Klebsiella pneumoniae isolate reveals the panorama of unexplored diversity in Northeast Brazil. Gene 2020;772:145386. [PMID: 33373662 DOI: 10.1016/j.gene.2020.145386] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 12/14/2020] [Accepted: 12/18/2020] [Indexed: 02/06/2023]
191
Draft Genome Sequences of Fructobacillus fructosus DPC 7238 and Leuconostoc mesenteroides DPC 7261, Mannitol-Producing Organisms Isolated from Fructose-Rich Honeybee-Resident Flowers on an Irish Farm. Microbiol Resour Announc 2020;9:9/50/e01297-20. [PMID: 33303674 PMCID: PMC7729423 DOI: 10.1128/mra.01297-20] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
192
Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment. Animals (Basel) 2020;10:ani10112181. [PMID: 33266380 PMCID: PMC7700370 DOI: 10.3390/ani10112181] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 10/31/2020] [Accepted: 11/03/2020] [Indexed: 12/21/2022]  Open
193
El Jeni R, Ghedira K, El Bour M, Abdelhak S, Benkahla A, Bouhaouala-Zahar B. High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus. BMC Microbiol 2020;20:322. [PMID: 33096980 PMCID: PMC7584074 DOI: 10.1186/s12866-020-01980-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 09/18/2020] [Indexed: 02/02/2023]  Open
194
Mora-Márquez F, Vázquez-Poletti JL, Chano V, Collada C, Soto Á, de Heredia UL. Hardware Performance Evaluation of De novo Transcriptome Assembly Software in Amazon Elastic Compute Cloud. Curr Bioinform 2020. [DOI: 10.2174/1574893615666191219095817] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
195
Nielsen ES, Henriques R, Beger M, Toonen RJ, von der Heyden S. Multi-model seascape genomics identifies distinct environmental drivers of selection among sympatric marine species. BMC Evol Biol 2020;20:121. [PMID: 32938400 PMCID: PMC7493327 DOI: 10.1186/s12862-020-01679-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 08/24/2020] [Indexed: 12/12/2022]  Open
196
Kayama M, Chen JF, Nakada T, Nishimura Y, Shikanai T, Azuma T, Miyashita H, Takaichi S, Kashiyama Y, Kamikawa R. A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems. BMC Biol 2020;18:126. [PMID: 32938439 PMCID: PMC7495860 DOI: 10.1186/s12915-020-00853-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 08/21/2020] [Indexed: 11/12/2022]  Open
197
Wu Z, Liao R, Yang T, Dong X, Lan D, Qin R, Liu H. Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae). BMC Genomics 2020;21:621. [PMID: 32912155 PMCID: PMC7488271 DOI: 10.1186/s12864-020-07045-4] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 09/01/2020] [Indexed: 01/20/2023]  Open
198
Ghosh A, Johnson MG, Osmanski AB, Louha S, Bayona-Vásquez NJ, Glenn TC, Gongora J, Green RE, Isberg S, Stevens RD, Ray DA. A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae. Genome Biol Evol 2020;12:3635-3646. [PMID: 31821505 PMCID: PMC6946029 DOI: 10.1093/gbe/evz269] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/05/2019] [Indexed: 12/14/2022]  Open
199
Draft Genome Sequence of Enterobacter kobei M4-VN, Isolated from Potatoes with Soft Rot Disease. Microbiol Resour Announc 2020;9:9/36/e00908-20. [PMID: 32883798 PMCID: PMC7471391 DOI: 10.1128/mra.00908-20] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
200
He C, Lin G, Wei H, Tang H, White FF, Valent B, Liu S. Factorial estimating assembly base errors using k-mer abundance difference (KAD) between short reads and genome assembled sequences. NAR Genom Bioinform 2020;2:lqaa075. [PMID: 33575622 PMCID: PMC7671381 DOI: 10.1093/nargab/lqaa075] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2020] [Revised: 08/02/2020] [Accepted: 09/01/2020] [Indexed: 12/25/2022]  Open
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