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For: Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. Evolutionary rate in the protein interaction network. Science 2002;296:750-2. [PMID: 11976460 DOI: 10.1126/science.1068696] [Citation(s) in RCA: 636] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
201
Amrine KCH, Swingley WD, Ardell DH. tRNA signatures reveal a polyphyletic origin of SAR11 strains among alphaproteobacteria. PLoS Comput Biol 2014;10:e1003454. [PMID: 24586126 PMCID: PMC3937112 DOI: 10.1371/journal.pcbi.1003454] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Accepted: 12/10/2013] [Indexed: 12/18/2022]  Open
202
Kumar NS, Dullaghan EM, Finlay BB, Gong H, Reiner NE, Jon Paul Selvam J, Thorson LM, Campbell S, Vitko N, Richardson AR, Zoraghi R, Young RN. Discovery and optimization of a new class of pyruvate kinase inhibitors as potential therapeutics for the treatment of methicillin-resistant Staphylococcus aureus infections. Bioorg Med Chem 2014;22:1708-25. [PMID: 24508307 DOI: 10.1016/j.bmc.2014.01.020] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2013] [Revised: 01/07/2014] [Accepted: 01/15/2014] [Indexed: 11/19/2022]
203
Gong P, Zhao M, He C. Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode. PLoS One 2014;9:e84842. [PMID: 24416299 PMCID: PMC3885619 DOI: 10.1371/journal.pone.0084842] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Accepted: 11/19/2013] [Indexed: 11/18/2022]  Open
204
Integrated Genomics Approaches in Evolutionary and Ecological Endocrinology. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2014;781:299-319. [DOI: 10.1007/978-94-007-7347-9_15] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
205
Chakraborty S, Ghosh TC. Evolutionary rate heterogeneity of core and attachment proteins in yeast protein complexes. Genome Biol Evol 2013;5:1366-75. [PMID: 23814130 PMCID: PMC3730348 DOI: 10.1093/gbe/evt096] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
206
Schumacher J, Rosenkranz D, Herlyn H. Mating systems and protein-protein interactions determine evolutionary rates of primate sperm proteins. Proc Biol Sci 2013;281:20132607. [PMID: 24307672 PMCID: PMC3866406 DOI: 10.1098/rspb.2013.2607] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
207
Warren S, Wan XF, Conant G, Korkin D. Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. PLoS One 2013;8:e81027. [PMID: 24282564 PMCID: PMC3839886 DOI: 10.1371/journal.pone.0081027] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2013] [Accepted: 10/08/2013] [Indexed: 12/31/2022]  Open
208
Davila-Velderrain J, Servin-Marquez A, Alvarez-Buylla ER. Molecular evolution constraints in the floral organ specification gene regulatory network module across 18 angiosperm genomes. Mol Biol Evol 2013;31:560-73. [PMID: 24273325 DOI: 10.1093/molbev/mst223] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
209
Jackson EL, Ollikainen N, Covert AW, Kortemme T, Wilke CO. Amino-acid site variability among natural and designed proteins. PeerJ 2013;1:e211. [PMID: 24255821 PMCID: PMC3828621 DOI: 10.7717/peerj.211] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Accepted: 10/24/2013] [Indexed: 11/20/2022]  Open
210
Han M, Qin S, Song X, Li Y, Jin P, Chen L, Ma F. Evolutionary rate patterns of genes involved in the Drosophila Toll and Imd signaling pathway. BMC Evol Biol 2013;13:245. [PMID: 24209511 PMCID: PMC3826850 DOI: 10.1186/1471-2148-13-245] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Accepted: 11/06/2013] [Indexed: 11/10/2022]  Open
211
Li S, Choi KP, Wu T, Zhang L. Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2013;10:1412-1421. [PMID: 24407300 DOI: 10.1109/tcbb.2013.14] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
212
Kiran M, Nagarajaram HA. Global versus local hubs in human protein-protein interaction network. J Proteome Res 2013;12:5436-46. [PMID: 24050456 DOI: 10.1021/pr4002788] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
213
Simple topological features reflect dynamics and modularity in protein interaction networks. PLoS Comput Biol 2013;9:e1003243. [PMID: 24130468 PMCID: PMC3794914 DOI: 10.1371/journal.pcbi.1003243] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2013] [Accepted: 08/14/2013] [Indexed: 11/30/2022]  Open
214
Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüş ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GRS, Rosenfeld JA, Sisu C, Wei X, Wilson M, Xue Y, Yu F, 1000 Genomes Project Consortium, Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M. Integrative annotation of variants from 1092 humans: application to cancer genomics. Science 2013;342:1235587. [PMID: 24092746 PMCID: PMC3947637 DOI: 10.1126/science.1235587] [Citation(s) in RCA: 276] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
215
Battle A, Mostafavi S, Zhu X, Potash JB, Weissman MM, McCormick C, Haudenschild CD, Beckman KB, Shi J, Mei R, Urban AE, Montgomery SB, Levinson DF, Koller D. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals. Genome Res 2013. [PMID: 24092820 DOI: 10.1101/gr.155192] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
216
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals. Genome Res 2013;24:14-24. [PMID: 24092820 PMCID: PMC3875855 DOI: 10.1101/gr.155192.113] [Citation(s) in RCA: 397] [Impact Index Per Article: 33.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
217
Liu Y, Li X, Liu Z, Chen L, Ng MK. Construction and analysis of single nucleotide polymorphism-single nucleotide polymorphism interaction networks. IET Syst Biol 2013;7:170-81. [PMID: 24067417 PMCID: PMC8687305 DOI: 10.1049/iet-syb.2012.0055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Revised: 02/17/2013] [Accepted: 03/25/2013] [Indexed: 11/19/2022]  Open
218
Seo H, Kim W, Lee J, Youn B. Network-based approaches for anticancer therapy (Review). Int J Oncol 2013;43:1737-44. [PMID: 24085339 DOI: 10.3892/ijo.2013.2114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2013] [Accepted: 08/23/2013] [Indexed: 12/16/2022]  Open
219
Schumacher J, Ramljak S, Asif AR, Schaffrath M, Zischler H, Herlyn H. Evolutionary conservation of mammalian sperm proteins associates with overall, not tyrosine, phosphorylation in human spermatozoa. J Proteome Res 2013;12:5370-82. [PMID: 23919900 DOI: 10.1021/pr400228c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
220
Experimental evolution of protein-protein interaction networks. Biochem J 2013;453:311-9. [PMID: 23849056 PMCID: PMC3727214 DOI: 10.1042/bj20130205] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
221
Colombo M, Laayouni H, Invergo BM, Bertranpetit J, Montanucci L. Metabolic flux is a determinant of the evolutionary rates of enzyme-encoding genes. Evolution 2013;68:605-13. [PMID: 24102646 DOI: 10.1111/evo.12262] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 08/15/2013] [Indexed: 01/25/2023]
222
Winterbach W, Mieghem PV, Reinders M, Wang H, Ridder DD. Topology of molecular interaction networks. BMC SYSTEMS BIOLOGY 2013;7:90. [PMID: 24041013 PMCID: PMC4231395 DOI: 10.1186/1752-0509-7-90] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Accepted: 08/01/2013] [Indexed: 12/23/2022]
223
Sequence diversity in coding regions of candidate genes in the glycoalkaloid biosynthetic pathway of wild potato species. G3-GENES GENOMES GENETICS 2013;3:1467-79. [PMID: 23853090 PMCID: PMC3755908 DOI: 10.1534/g3.113.007146] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
224
Zoraghi R, Reiner NE. Protein interaction networks as starting points to identify novel antimicrobial drug targets. Curr Opin Microbiol 2013;16:566-72. [PMID: 23938265 DOI: 10.1016/j.mib.2013.07.010] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Revised: 07/12/2013] [Accepted: 07/16/2013] [Indexed: 01/17/2023]
225
Han HW, Ohn JH, Moon J, Kim JH. Yin and Yang of disease genes and death genes between reciprocally scale-free biological networks. Nucleic Acids Res 2013;41:9209-17. [PMID: 23935122 PMCID: PMC3814386 DOI: 10.1093/nar/gkt683] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
226
Wei W, Zhang T, Lin D, Yang ZJ, Guo FB. Transcriptional abundance is not the single force driving the evolution of bacterial proteins. BMC Evol Biol 2013;13:162. [PMID: 23914835 PMCID: PMC3734234 DOI: 10.1186/1471-2148-13-162] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2013] [Accepted: 08/01/2013] [Indexed: 11/20/2022]  Open
227
Chen YC, Cheng JH, Tsai ZTY, Tsai HK, Chuang TJ. The impact of trans-regulation on the evolutionary rates of metazoan proteins. Nucleic Acids Res 2013;41:6371-80. [PMID: 23658220 PMCID: PMC3711421 DOI: 10.1093/nar/gkt349] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Revised: 04/10/2013] [Accepted: 04/14/2013] [Indexed: 11/13/2022]  Open
228
Employing directed evolution for the functional analysis of multi-specific proteins. Bioorg Med Chem 2013;21:3511-6. [DOI: 10.1016/j.bmc.2013.04.052] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 04/11/2013] [Accepted: 04/18/2013] [Indexed: 01/17/2023]
229
Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, Yu H. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Sci Signal 2013;6:ra38. [PMID: 23695164 DOI: 10.1126/scisignal.2003350] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
230
Alvarez-Ponce D, Fares MA. Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network. Genome Biol Evol 2013;4:1263-74. [PMID: 23160177 PMCID: PMC3542556 DOI: 10.1093/gbe/evs101] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
231
Javier Zea D, Miguel Monzon A, Fornasari MS, Marino-Buslje C, Parisi G. Protein Conformational Diversity Correlates with Evolutionary Rate. Mol Biol Evol 2013;30:1500-3. [DOI: 10.1093/molbev/mst065] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
232
A kinetic model of the evolution of a protein interaction network. BMC Genomics 2013;14:172. [PMID: 23497092 PMCID: PMC3751699 DOI: 10.1186/1471-2164-14-172] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2012] [Accepted: 03/08/2013] [Indexed: 11/10/2022]  Open
233
Bertolazzi P, Bock ME, Guerra C. On the functional and structural characterization of hubs in protein–protein interaction networks. Biotechnol Adv 2013;31:274-86. [DOI: 10.1016/j.biotechadv.2012.12.002] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2012] [Revised: 11/13/2012] [Accepted: 12/01/2012] [Indexed: 01/07/2023]
234
Song J, Singh M. From hub proteins to hub modules: the relationship between essentiality and centrality in the yeast interactome at different scales of organization. PLoS Comput Biol 2013;9:e1002910. [PMID: 23436988 PMCID: PMC3578755 DOI: 10.1371/journal.pcbi.1002910] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Accepted: 12/21/2012] [Indexed: 11/22/2022]  Open
235
Liu Z, Guo F, Zhang J, Wang J, Lu L, Li D, He F. Proteome-wide prediction of self-interacting proteins based on multiple properties. Mol Cell Proteomics 2013;12:1689-700. [PMID: 23422585 DOI: 10.1074/mcp.m112.021790] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
236
SPINAL: scalable protein interaction network alignment. Bioinformatics 2013;29:917-24. [DOI: 10.1093/bioinformatics/btt071] [Citation(s) in RCA: 95] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
237
Choi SS, Hannenhalli S. Three independent determinants of protein evolutionary rate. J Mol Evol 2013;76:98-111. [PMID: 23400388 DOI: 10.1007/s00239-013-9543-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Accepted: 01/16/2013] [Indexed: 12/15/2022]
238
Wang H, Zheng H. Correlation of genomic features with dynamic modularity in the yeast interactome: a view from the structural perspective. IEEE Trans Nanobioscience 2013;11:244-50. [PMID: 22987130 DOI: 10.1109/tnb.2012.2212720] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
239
Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A 2013;110:E678-86. [PMID: 23382244 DOI: 10.1073/pnas.1218066110] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
240
Willadsen K, Cao MD, Wiles J, Balasubramanian S, Bodén M. Repeat-encoded poly-Q tracts show statistical commonalities across species. BMC Genomics 2013;14:76. [PMID: 23374135 PMCID: PMC3617014 DOI: 10.1186/1471-2164-14-76] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Accepted: 01/18/2013] [Indexed: 11/10/2022]  Open
241
Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJC, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MCJ, Falush D. Progressive genome-wide introgression in agricultural Campylobacter coli. Mol Ecol 2013;22:1051-64. [PMID: 23279096 PMCID: PMC3749442 DOI: 10.1111/mec.12162] [Citation(s) in RCA: 113] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Revised: 10/16/2012] [Accepted: 10/21/2012] [Indexed: 01/24/2023]
242
Wang J, Peng W, Wu FX. Computational approaches to predicting essential proteins: A survey. Proteomics Clin Appl 2013;7:181-92. [DOI: 10.1002/prca.201200068] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2012] [Revised: 09/12/2012] [Accepted: 11/06/2012] [Indexed: 12/13/2022]
243
Wang M, Wang Q, Wang Z, Wang Q, Zhang X, Pan Y. The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway. Evol Bioinform Online 2013;9:1-16. [PMID: 23362368 PMCID: PMC3547545 DOI: 10.4137/ebo.s10539] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
244
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes. Biochem J 2013;449:581-94. [DOI: 10.1042/bj20121221] [Citation(s) in RCA: 131] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
245
Pérez-Bercoff Å, Hudson CM, Conant GC. A conserved mammalian protein interaction network. PLoS One 2013;8:e52581. [PMID: 23320073 PMCID: PMC3539715 DOI: 10.1371/journal.pone.0052581] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2012] [Accepted: 11/20/2012] [Indexed: 11/19/2022]  Open
246
Hsin Liu C, Li KC, Yuan S. Human protein-protein interaction prediction by a novel sequence-based co-evolution method: co-evolutionary divergence. Bioinformatics 2013;29:92-98. [PMID: 23080115 DOI: 10.1093/bioinformatics/bts620] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]  Open
247
Wang S, Wei W, Zheng Y, Hou J, Dou Y, Zhang S, Luo X, Cai X. The role of insulin C-peptide in the coevolution analyses of the insulin signaling pathway: a hint for its functions. PLoS One 2012;7:e52847. [PMID: 23300796 PMCID: PMC3531361 DOI: 10.1371/journal.pone.0052847] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2012] [Accepted: 11/21/2012] [Indexed: 12/16/2022]  Open
248
Leducq JB, Charron G, Diss G, Gagnon-Arsenault I, Dubé AK, Landry CR. Evidence for the robustness of protein complexes to inter-species hybridization. PLoS Genet 2012;8:e1003161. [PMID: 23300466 PMCID: PMC3531474 DOI: 10.1371/journal.pgen.1003161] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2012] [Accepted: 10/26/2012] [Indexed: 01/11/2023]  Open
249
Bogumil D, Dagan T. Cumulative impact of chaperone-mediated folding on genome evolution. Biochemistry 2012;51:9941-53. [PMID: 23167595 DOI: 10.1021/bi3013643] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Rezende AM, Folador EL, Resende DDM, Ruiz JC. Computational prediction of protein-protein interactions in Leishmania predicted proteomes. PLoS One 2012;7:e51304. [PMID: 23251492 PMCID: PMC3519578 DOI: 10.1371/journal.pone.0051304] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2012] [Accepted: 10/31/2012] [Indexed: 11/18/2022]  Open
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