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For: Süel GM, Kulkarni RP, Dworkin J, Garcia-Ojalvo J, Elowitz MB. Tunability and Noise Dependence in Differentiation Dynamics. Science 2007;315:1716-9. [PMID: 17379809 DOI: 10.1126/science.1137455] [Citation(s) in RCA: 335] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Number Cited by Other Article(s)
301
Leisner M, Kuhr JT, Rädler JO, Frey E, Maier B. Kinetics of genetic switching into the state of bacterial competence. Biophys J 2009;96:1178-88. [PMID: 19186153 DOI: 10.1016/j.bpj.2008.10.034] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2008] [Accepted: 10/15/2008] [Indexed: 10/21/2022]  Open
302
Fraser D, Kaern M. A chance at survival: gene expression noise and phenotypic diversification strategies. Mol Microbiol 2009;71:1333-40. [DOI: 10.1111/j.1365-2958.2009.06605.x] [Citation(s) in RCA: 153] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
303
Balleza E, López-Bojorquez LN, Martínez-Antonio A, Resendis-Antonio O, Lozada-Chávez I, Balderas-Martínez YI, Encarnación S, Collado-Vides J. Regulation by transcription factors in bacteria: beyond description. FEMS Microbiol Rev 2009;33:133-51. [PMID: 19076632 PMCID: PMC2704942 DOI: 10.1111/j.1574-6976.2008.00145.x] [Citation(s) in RCA: 138] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
304
Bayer TS, Hoff KG, Beisel CL, Lee JJ, Smolke CD. Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. J Biol Eng 2009;3:1. [PMID: 19118500 PMCID: PMC2631470 DOI: 10.1186/1754-1611-3-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Accepted: 01/02/2009] [Indexed: 11/10/2022]  Open
305
Raj A, van Oudenaarden A. Single-molecule approaches to stochastic gene expression. Annu Rev Biophys 2009;38:255-70. [PMID: 19416069 PMCID: PMC3126657 DOI: 10.1146/annurev.biophys.37.032807.125928] [Citation(s) in RCA: 241] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
306
St-Pierre F, Endy D. Determination of cell fate selection during phage lambda infection. Proc Natl Acad Sci U S A 2008;105:20705-10. [PMID: 19098103 PMCID: PMC2605630 DOI: 10.1073/pnas.0808831105] [Citation(s) in RCA: 145] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2008] [Indexed: 11/18/2022]  Open
307
Lan Y, Elston TC, Papoian GA. Elimination of fast variables in chemical Langevin equations. J Chem Phys 2008;129:214115. [PMID: 19063552 PMCID: PMC2674792 DOI: 10.1063/1.3027499] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2008] [Accepted: 10/23/2008] [Indexed: 11/14/2022]  Open
308
Veening JW, Smits WK, Kuipers OP. Bistability, epigenetics, and bet-hedging in bacteria. Annu Rev Microbiol 2008;62:193-210. [PMID: 18537474 DOI: 10.1146/annurev.micro.62.081307.163002] [Citation(s) in RCA: 722] [Impact Index Per Article: 42.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
309
Leisner M, Stingl K, Frey E, Maier B. Stochastic switching to competence. Curr Opin Microbiol 2008;11:553-9. [PMID: 18955155 DOI: 10.1016/j.mib.2008.09.020] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2008] [Revised: 09/24/2008] [Accepted: 09/28/2008] [Indexed: 11/15/2022]
310
Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Mol Syst Biol 2008;4:224. [PMID: 18956013 PMCID: PMC2583087 DOI: 10.1038/msb.2008.62] [Citation(s) in RCA: 96] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2008] [Accepted: 09/15/2008] [Indexed: 01/20/2023]  Open
311
Raj A, van Oudenaarden A. Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 2008;135:216-26. [PMID: 18957198 PMCID: PMC3118044 DOI: 10.1016/j.cell.2008.09.050] [Citation(s) in RCA: 1807] [Impact Index Per Article: 106.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
312
Turcotte M, Garcia-Ojalvo J, Süel GM. A genetic timer through noise-induced stabilization of an unstable state. Proc Natl Acad Sci U S A 2008;105:15732-7. [PMID: 18836072 PMCID: PMC2560995 DOI: 10.1073/pnas.0806349105] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2008] [Indexed: 11/18/2022]  Open
313
Cai L, Dalal CK, Elowitz MB. Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 2008;455:485-90. [PMID: 18818649 PMCID: PMC2695983 DOI: 10.1038/nature07292] [Citation(s) in RCA: 373] [Impact Index Per Article: 21.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2008] [Accepted: 07/18/2008] [Indexed: 11/09/2022]
314
Gonze D, Jacquet M, Goldbeter A. Stochastic modelling of nucleocytoplasmic oscillations of the transcription factor Msn2 in yeast. J R Soc Interface 2008;5 Suppl 1:S95-109. [PMID: 18492651 DOI: 10.1098/rsif.2008.0141.focus] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
315
Tanouchi Y, Tu D, Kim J, You L. Noise reduction by diffusional dissipation in a minimal quorum sensing motif. PLoS Comput Biol 2008;4:e1000167. [PMID: 18769706 PMCID: PMC2507755 DOI: 10.1371/journal.pcbi.1000167] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2008] [Accepted: 07/23/2008] [Indexed: 11/18/2022]  Open
316
Feinerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G. Variability and robustness in T cell activation from regulated heterogeneity in protein levels. Science 2008;321:1081-4. [PMID: 18719282 PMCID: PMC2673522 DOI: 10.1126/science.1158013] [Citation(s) in RCA: 261] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
317
Altschuler SJ, Angenent SB, Wang Y, Wu LF. On the spontaneous emergence of cell polarity. Nature 2008;454:886-9. [PMID: 18704086 PMCID: PMC2562338 DOI: 10.1038/nature07119] [Citation(s) in RCA: 178] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2008] [Accepted: 05/27/2008] [Indexed: 11/09/2022]
318
Shahrezaei V, Swain PS. The stochastic nature of biochemical networks. Curr Opin Biotechnol 2008;19:369-74. [PMID: 18662776 DOI: 10.1016/j.copbio.2008.06.011] [Citation(s) in RCA: 130] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2008] [Revised: 06/17/2008] [Accepted: 06/21/2008] [Indexed: 11/28/2022]
319
Sacher R, Stergiou L, Pelkmans L. Lessons from genetics: interpreting complex phenotypes in RNAi screens. Curr Opin Cell Biol 2008;20:483-9. [PMID: 18602470 DOI: 10.1016/j.ceb.2008.06.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2008] [Revised: 06/10/2008] [Accepted: 06/10/2008] [Indexed: 11/16/2022]
320
Mitarai N, Dodd IB, Crooks MT, Sneppen K. The generation of promoter-mediated transcriptional noise in bacteria. PLoS Comput Biol 2008;4:e1000109. [PMID: 18617999 PMCID: PMC2442219 DOI: 10.1371/journal.pcbi.1000109] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2007] [Accepted: 05/30/2008] [Indexed: 11/18/2022]  Open
321
Tabor JJ, Bayer TS, Simpson ZB, Levy M, Ellington AD. Engineering stochasticity in gene expression. MOLECULAR BIOSYSTEMS 2008;4:754-61. [PMID: 18563250 PMCID: PMC2630191 DOI: 10.1039/b801245h] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
322
Mehta P, Mukhopadhyay R, Wingreen NS. Exponential sensitivity of noise-driven switching in genetic networks. Phys Biol 2008;5:026005. [PMID: 18560045 DOI: 10.1088/1478-3975/5/2/026005] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
323
The effects of reversibility and noise on stochastic phosphorylation cycles and cascades. Biophys J 2008;95:2183-92. [PMID: 18515389 DOI: 10.1529/biophysj.107.126185] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
324
The Goldbeter-Koshland switch in the first-order region and its response to dynamic disorder. PLoS One 2008;3:e2140. [PMID: 18478088 PMCID: PMC2374878 DOI: 10.1371/journal.pone.0002140] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2008] [Accepted: 03/27/2008] [Indexed: 11/19/2022]  Open
325
Shahrezaei V, Ollivier JF, Swain PS. Colored extrinsic fluctuations and stochastic gene expression. Mol Syst Biol 2008;4:196. [PMID: 18463620 PMCID: PMC2424296 DOI: 10.1038/msb.2008.31] [Citation(s) in RCA: 164] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2008] [Accepted: 04/03/2008] [Indexed: 11/30/2022]  Open
326
Hayward P, Kalmar T, Arias AM. Wnt/Notch signalling and information processing during development. Development 2008;135:411-24. [PMID: 18192283 DOI: 10.1242/dev.000505] [Citation(s) in RCA: 230] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
327
Losick R, Desplan C. Stochasticity and cell fate. Science 2008;320:65-8. [PMID: 18388284 PMCID: PMC2605794 DOI: 10.1126/science.1147888] [Citation(s) in RCA: 408] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
328
Sureka K, Ghosh B, Dasgupta A, Basu J, Kundu M, Bose I. Positive feedback and noise activate the stringent response regulator rel in mycobacteria. PLoS One 2008;3:e1771. [PMID: 18335046 PMCID: PMC2258413 DOI: 10.1371/journal.pone.0001771] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2007] [Accepted: 02/08/2008] [Indexed: 01/25/2023]  Open
329
Pedraza JM, Paulsson J. Effects of molecular memory and bursting on fluctuations in gene expression. Science 2008;319:339-43. [PMID: 18202292 DOI: 10.1126/science.1144331] [Citation(s) in RCA: 262] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
330
Zhong JF, Chen Y, Marcus JS, Scherer A, Quake SR, Taylor CR, Weiner LP. A microfluidic processor for gene expression profiling of single human embryonic stem cells. LAB ON A CHIP 2008;8:68-74. [PMID: 18094763 PMCID: PMC4110104 DOI: 10.1039/b712116d] [Citation(s) in RCA: 165] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
331
Yeh BJ, Lim WA. Synthetic biology: lessons from the history of synthetic organic chemistry. Nat Chem Biol 2007;3:521-5. [PMID: 17710092 DOI: 10.1038/nchembio0907-521] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
332
Mara A, Holley SA. Oscillators and the emergence of tissue organization during zebrafish somitogenesis. Trends Cell Biol 2007;17:593-9. [DOI: 10.1016/j.tcb.2007.09.005] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2007] [Revised: 09/16/2007] [Accepted: 09/17/2007] [Indexed: 11/25/2022]
333
Barkai N, Shilo BZ. Variability and Robustness in Biomolecular Systems. Mol Cell 2007;28:755-60. [PMID: 18082601 DOI: 10.1016/j.molcel.2007.11.013] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
334
Molecular level stochastic model for competence cycles in Bacillus subtilis. Proc Natl Acad Sci U S A 2007;104:17582-7. [PMID: 17962411 DOI: 10.1073/pnas.0707965104] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
335
Ullner E, Zaikin A, Volkov EI, García-Ojalvo J. Multistability and clustering in a population of synthetic genetic oscillators via phase-repulsive cell-to-cell communication. PHYSICAL REVIEW LETTERS 2007;99:148103. [PMID: 17930726 DOI: 10.1103/physrevlett.99.148103] [Citation(s) in RCA: 126] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2007] [Indexed: 05/05/2023]
336
Hecht I, Ben-Jacob E, Levine H. Correlated phenotypic transitions to competence in bacterial colonies. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007;76:040901. [PMID: 17994927 DOI: 10.1103/physreve.76.040901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2007] [Revised: 06/06/2007] [Indexed: 05/25/2023]
337
Mettetal JT, van Oudenaarden A. Necessary Noise. Science 2007;317:463-4. [PMID: 17656711 DOI: 10.1126/science.1146747] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
338
Maamar H, Raj A, Dubnau D. Noise in gene expression determines cell fate in Bacillus subtilis. Science 2007;317:526-9. [PMID: 17569828 PMCID: PMC3828679 DOI: 10.1126/science.1140818] [Citation(s) in RCA: 464] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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