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Li SC, Lin YC, Li YP. Comparative Analysis of Uncoupled Mode Approximations for Molecular Thermochemistry and Kinetics. J Chem Theory Comput 2022; 18:6866-6877. [PMID: 36269729 DOI: 10.1021/acs.jctc.2c00664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The accurate prediction of thermochemistry and kinetic parameters is an important task for reaction modeling. Unfortunately, the commonly used harmonic oscillator model is often not accurate enough due to the absence of anharmonic effects. In this work, we improve the representation of an anharmonic potential energy surface (PES) using uncoupled mode (UM) approximations, which model the full-dimensional PES as a sum of one-dimensional potentials of each mode. We systematically analyze different PES sampling schemes and coordinate systems for constructing the one-dimensional potentials, and benchmark the performance of UM methods on data sets of molecular thermochemistry and kinetic properties. The results show that the accuracy of the UM approach strongly depends on how the one-dimensional potentials are defined. If one-dimensional potentials are constructed by sampling along normal mode directions (UM-N) or along the directions that minimize intermode coupling (E- and E'-optimized), the accuracies of the predicted properties are not significantly improved compared to the harmonic oscillator model. However, significant improvements can be achieved by sampling the torsional modes separately from the vibrational modes (UM-T and UM-VT). In this work, three types of coordinate systems are examined, including redundant internal coordinates (RIC), hybrid internal coordinates (HIC), and translation-rotation-internal coordinates (TRIC). The HIC and TRIC coordinate systems can outperform RIC since transition state species may contain large-amplitude interfragmentary motions that regular internal coordinates can not describe adequately. Among all the methods we examined, the activation energies and pre-exponential factors calculated using UM-VT with either TRIC or HIC best agree with the reference values. Since UM-VT requires only a number of additional single point energy calculations for each independent mode, the scaling of computational costs of UM-VT is the same as that of the standard harmonic oscillator model, making UM-VT an appealing way of calculating the thermochemistry and kinetic properties for large-size systems.
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Affiliation(s)
- Shih-Cheng Li
- Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 10617, Taiwan
| | - Yen-Chun Lin
- Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 10617, Taiwan
| | - Yi-Pei Li
- Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 10617, Taiwan.,Taiwan International Graduate Program on Sustainable Chemical Science and Technology (TIGP-SCST), Academia Sinica, No. 128, Sec. 2, Academia Road, Taipei 11529, Taiwan
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2
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Cioc RC, Crockatt M, van der Waal JC, Bruijnincx PCA. Targeting Valuable Chemical Commodities: Hydrazine-mediated Diels-Alder Aromatization of Biobased Furfurals. CHEMSUSCHEM 2022; 15:e202201139. [PMID: 35833422 PMCID: PMC9804822 DOI: 10.1002/cssc.202201139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/13/2022] [Indexed: 06/15/2023]
Abstract
A hydrazine-mediated approach towards renewable aromatics production via Diels-Alder aromatization of readily available, biobased furfurals was explored as alterative to the more classical approaches that rely on reactive but uneconomical reduced dienes (e. g., 2,5-dimethylfuran). To enable cycloaddition chemistry with these otherwise unreactive formyl furans, substrate activation by N,N-dimethyl hydrazone formation was investigated. The choice of the reaction partner was key to the success of the transformation, and in this respect acrylic acid showed the most promising results in the synthesis of aromatics. This strategy allowed for selectivities up to 60 % for a complex transformation consisting of Diels-Alder cycloaddition, oxabridge opening, decarboxylation, and dehydration. Exploration of the furfural scope yielded generic structure-reactivity-stability relationships. The proposed methodology enabled the redox-efficient, operationally simple, and mild synthesis of renewable (p-disubstituted) aromatics of commercial importance under remarkably mild conditions.
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Affiliation(s)
- Răzvan C. Cioc
- Organic Chemistry and CatalysisDebye Institute for Nanomaterials ScienceUtrecht UniversityUniversiteitsweg 993584 CGUtrecht (TheNetherlands
| | - Marc Crockatt
- Department of Sustainable Process and Energy Systems, TNOLeeghwaterstraat 442628 CADelft (TheNetherlands
| | - Jan C. van der Waal
- Department of Sustainable Process and Energy Systems, TNOLeeghwaterstraat 442628 CADelft (TheNetherlands
| | - Pieter C. A. Bruijnincx
- Organic Chemistry and CatalysisDebye Institute for Nanomaterials ScienceUtrecht UniversityUniversiteitsweg 993584 CGUtrecht (TheNetherlands
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Velty A, Iborra S, Corma A. Synthetic Routes for Designing Furanic and Non Furanic Biobased Surfactants from 5-Hydroxymethylfurfural. CHEMSUSCHEM 2022; 15:e202200181. [PMID: 35325511 PMCID: PMC9401603 DOI: 10.1002/cssc.202200181] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 03/21/2022] [Indexed: 06/14/2023]
Abstract
5-hydroxymethylfurfural (HMF) is one of the most valuable biomass platform molecules, enabling the construction of a plethora of high value-added furanic compounds. In particular, in the last decade, HMF has been considered as a starting material for designing biobased surfactants, not only because of its renewability and carbon footprint, but also because of its enhanced biodegradability. This Review presents recent examples of the different approaches to link the hydrophilic and lipophilic moieties into the hydrophobic furan (and tetrahydrofuran) ring, giving a variety of biobased surfactants that have been classified here according to the charge of the head polar group. Moreover, strategies for the synthesis of different non-furanic structures surfactant molecules (such as levulinic acid, cyclopentanols, and aromatics) derived from HMF are described. The new HMF-based amphiphilic molecules presented here cover a wide range of hydrophilic-lipophilic balance values and have suitable surfactant properties such as surface tension activity and critical micelle concentration, to be an important alternative for the replacement of non-sustainable surfactants.
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Affiliation(s)
- Alexandra Velty
- Instituto de Tecnología QuímicaUniversitat Politècnica de ValènciaConsejo Superior de Investigaciones CientíficasAvenida de los Naranjos s/nValenciaE-46022Spain
| | - Sara Iborra
- Instituto de Tecnología QuímicaUniversitat Politècnica de ValènciaConsejo Superior de Investigaciones CientíficasAvenida de los Naranjos s/nValenciaE-46022Spain
| | - Avelino Corma
- Instituto de Tecnología QuímicaUniversitat Politècnica de ValènciaConsejo Superior de Investigaciones CientíficasAvenida de los Naranjos s/nValenciaE-46022Spain
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Cioc RC, Crockatt M, van der Waal JC, Bruijnincx PCA. The Interplay between Kinetics and Thermodynamics in Furan Diels-Alder Chemistry for Sustainable Chemicals Production. Angew Chem Int Ed Engl 2022; 61:e202114720. [PMID: 35014138 PMCID: PMC9304315 DOI: 10.1002/anie.202114720] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Indexed: 01/21/2023]
Abstract
Biomass‐derived furanic platform molecules have emerged as promising building blocks for renewable chemicals and functional materials. To this aim, the Diels–Alder (DA) cycloaddition stands out as a versatile strategy to convert these renewable resources in highly atom‐efficient ways. Despite nearly a century worth of examples of furan DA chemistry, clear structure–reactivity–stability relationships are still to be established. Detailed understanding of the intricate interplay between kinetics and thermodynamics in these very particular [4+2] cycloadditions is essential to push further development and truly expand the scope beyond the ubiquitous addend combinations of electron‐rich furans and electron‐deficient olefins. Herein, we provide pertinent examples of DA chemistry, taken from various fields, to highlight trends, establish correlations and answer open questions in the field with the aim to support future efforts in the sustainable chemicals and materials production.
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Affiliation(s)
- Răzvan C Cioc
- Organic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
| | - Marc Crockatt
- Department of Sustainable Process and Energy Systems, TNO, Leeghwaterstraat 44, 2628, CA, Delft, The Netherlands
| | - Jan C van der Waal
- Department of Sustainable Process and Energy Systems, TNO, Leeghwaterstraat 44, 2628, CA, Delft, The Netherlands
| | - Pieter C A Bruijnincx
- Organic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG, Utrecht, The Netherlands
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Cioc R, Crockatt M, Van der Waal JC, Bruijnincx P. The Interplay between Kinetics and Thermodynamics in Furan Diels‐Alder Chemistry for Sustainable Chemicals Production. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202114720] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Razvan Cioc
- Utrecht University: Universiteit Utrecht Chemistry NETHERLANDS
| | - Marc Crockatt
- TNO Sustainable Process and Energy Systems NETHERLANDS
| | | | - Pieter Bruijnincx
- Utrecht University Chemistry Universiteitsweg99Netherlands 3584 CG Utrecht NETHERLANDS
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Ravasco JMJM, Gomes RFA. Recent Advances on Diels-Alder-Driven Preparation of Bio-Based Aromatics. CHEMSUSCHEM 2021; 14:3047-3053. [PMID: 34058082 PMCID: PMC8453924 DOI: 10.1002/cssc.202100813] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/21/2021] [Indexed: 05/08/2023]
Abstract
The preparation of high value-added chemicals from renewable resources is a crucial approach towards a sustainable economy. One prominent alternative to the production of petroleum-based chemicals from fossil resources is through the sequential Diels-Alder/aromatization reactions of biomass-derived furan platforms. This Concept is focused on the recent boom in bio-based furan DA strategies for aromatization of bio-based platform chemicals, particularly that of furfurals, ranging from indirect use and activation strategies to recent examples of direct DA reaction of these electron-withdrawing biomass-derived furans.
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Affiliation(s)
- Joao M. J. M. Ravasco
- Research Institute for Medicines (iMed.ULisboa)Faculty of PharmacyUniversity of LisbonAvenida Professor Gama Pinto1649-003LisbonPortugal
| | - Rafael F. A. Gomes
- Research Institute for Medicines (iMed.ULisboa)Faculty of PharmacyUniversity of LisbonAvenida Professor Gama Pinto1649-003LisbonPortugal
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Yeh JY, Li SC, Chen CH, Wu KCW, Li YP. Quantum Mechanical Calculations for Biomass Valorization over Metal-Organic Frameworks (MOFs). Chem Asian J 2021; 16:1049-1056. [PMID: 33651485 DOI: 10.1002/asia.202001371] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 02/25/2021] [Indexed: 11/11/2022]
Abstract
Metal-organic framework (MOF) in biomass valorization is a promising technology developed in recent decades. By tailoring both the metal nodes and organic ligands, MOFs exhibit multiple functionalities, which not only extend their applicability in biomass conversion but also increase the complexity of material designs. To address this issue, quantum mechanical simulations have been used to provide mechanistic insights into the catalysis of biomass-derived molecules, which could potentially facilitate the development of novel MOF-based materials for biomass valorization. The aim of this review is to survey recent quantum mechanical simulations on biomass reactions occurring in MOF catalysts, with the emphasis on the studies of the catalytic activity of active sites and the effects of organic ligand and porous structures on the kinetics. Moreover, different model systems and computational methods used for MOF simulations are also surveyed and discussed in this review.
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Affiliation(s)
- Jyun-Yi Yeh
- International Graduate Program of Molecular Science and Technology (NTU-MST), National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan.,Taiwan International Graduate Program (TIGP), Academia Sinica, No. 128, Sec. 2 Academia Road, Taipei, 11529, Taiwan
| | - Shih-Cheng Li
- Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan
| | - Celine H Chen
- School of Engineering, Brown University, 184 Hope St, Providence, RI, 02912, United States
| | - Kevin C-W Wu
- International Graduate Program of Molecular Science and Technology (NTU-MST), National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan.,Taiwan International Graduate Program (TIGP), Academia Sinica, No. 128, Sec. 2 Academia Road, Taipei, 11529, Taiwan.,Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan.,Center of Atomic Initiative for New Materials, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan
| | - Yi-Pei Li
- Taiwan International Graduate Program (TIGP), Academia Sinica, No. 128, Sec. 2 Academia Road, Taipei, 11529, Taiwan.,Department of Chemical Engineering, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan
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