In Situ X-ray Structural Studies of a Flexible Host Responding to Incremental Gas Loading

Direct observation of electron transfer in solids through X-ray crystallography

Nanoscale electron transfer (ET) in solids is fundamental to the design of multifunctional nanomaterials, yet its process is not fully understood. Herein, through X-ray crystallography, we directly observe solid-state ET via a crystal-to-crystal process. We first demonstrate the creation of a robust and flexible electron acceptor/acceptor (A/A) double-wall nanotube crystal ([(Zn2+)4(LA)4(LA=O)4]n) with a large window (0.90 nm × 0.92 nm) through the one-dimensional porous crystallization of heteroleptic Zn4 metallocycles ((Zn2+)4(LA)4(LA=O)4) with two different acceptor ligands (2,7-bis((1-ethyl-1H-imidazol-2-yl)ethynyl)acridine (LA) and 2,7-bis((1-ethyl-1H-imidazol-2-yl)ethynyl)acridin-9(10H)-one (LA=O)) in a slow-oxidation-associated crystallization procedure. We then achieve the bottom-up construction of the electron donor incorporated-A/A nanotube crystal ([(D)2⊂(Zn2+)4(LA)4(LA=O)4]n) through the subsequent absorption of electron donor guests (D = tetrathiafulvalene (TTF) and ferrocene (Fc)). Finally, we remove electrons from the electron donor guests inside the nanotube crystal through facile ET in the solid state to accumulate holes inside the nanotube crystal ([(D•+)2⊂(Zn2+)4(LA)4(LA=O)4]n), where the solid-state ET process (D - e- → D•+) is thus observed directly by X-ray crystallography.

High Pressure In Situ Single-Crystal X-Ray Diffraction Reveals Turnstile Linker Rotation Upon Room-Temperature Stepped Uptake of Alkanes

The rare availability of suitable single-crystal X-ray diffraction (SCXRD) structural data allows for the direct interpretation of the response of a framework to gas sorption and may lead to the development of improved functional porous materials. We report an in situ SCXRD structural investigation of a flexible MOF subjected to methane, ethane, propane, and butane gas pressures. Supporting theoretical investigations indicate weak host-guest interactions for the crystallographically modelled gaseous guests and, in addition, reveal that a turnstile mechanism facilitates the transport of alkanes through the seemingly nonporous system. Inflections present in the adsorption isotherms are furthermore rationalized as due to gate-opening, but without the expected creation of new accessible space.

Crystallisation of organic salts by sublimation: salt formation from the gas phase

Co-sublimation of two neutral components yields crystals of salts and co-crystals. Experiments show that during sublimation of salts, proton transfer occurs after molecules enter the gas phase.

CO2-induced single-crystal to single-crystal transformations of an interpenetrated flexible MOF explained by in situ crystallographic analysis and molecular modeling

A molecular-level investigation is reported on breathing behaviour of a metal-organic framework (1) in response to CO2 gas pressure. High-pressure gas adsorption shows a pronounced step corresponding to a gate-opening phase transformation from a closed (1cp ) to a large-pore (1lp ) form. A plateau is observed upon desorption corresponding to narrow-pore intermediate form 1np which does not occur during adsorption. These events are corroborated by pressure-gradient differential scanning calorimetry and in situ single-crystal X-ray diffraction analysis under controlled CO2 gas pressure. Complete crystallographic characterisation facilitated a rationalisation of each phase transformation in the series 1cp → 1lp → 1np → 1cp during adsorption and subsequent desorption. Metropolis grand-canonical Monte Carlo simulations and DFT-PBE-D3 interaction energy calculations strongly underpin this first detailed structural investigation of an intermediate phase encountered upon desorption.

Reversible uptake of sulfur-containing gases by single crystals of a 8 metallacrown

The exposure of green crystals of the [CrF(O₂C^tBu)₂]₈Cr₈ metallacrown to SO₂ and H₂S gases results in the binding of the gas molecules in the internal molecular cavity, despite the absence of any pores or channels in the structure.

A new dynamic framework with direct in situ visualisation of breathing under CO2 gas pressure

Structural evidence from in situ single-crystal X-ray diffraction analysis reveals flexibility in a new non-interpenetrated pillared-layer MOF that switches between a wide-pore and a narrow-pore form.

Visualizing Structural Transformation and Guest Binding in a Flexible Metal-Organic Framework under High Pressure and Room Temperature

Understanding the effect of gas molecules on the framework structures upon gas sorption in porous materials is highly desirable for the development of gas storage and separation technologies. However, this remains challenging for flexible metal-organic frameworks (MOFs) which feature "gate-opening/gate-closing" or "breathing" sorption behaviors under external stimuli. Herein, we report such a flexible Cd-MOF that exhibits "gating effect" upon CO₂ sorption. The ability of the desolvated flexible Cd-MOF to retain crystal singularity under high pressure enables the direct visualization of the reversible closed-/open-pore states before and after the structural transformation as induced by CO₂ adsorption/desorption through in situ single-crystal X-ray diffraction experiments. The binding sites of CO₂ molecules within the flexible MOF under high pressure and room temperature have also been identified via combined in situ single-crystal X-ray diffraction and powder X-ray diffraction studies, facilitating the elucidation of the states observed during gate-opening/gate-closing behaviors. Our work therefore lays a foundation to understand the high-pressure gas sorption within flexible MOFs at ambient temperature, which will help to improve the design efforts of new flexible MOFs for applications in responsive gas sorption and separation.

Giant Hysteretic Sorption of CO2 : In Situ Crystallographic Visualization of Guest Binding within a Breathing Framework at 298 K

A dynamic Zn^II -MOF has been shown to exhibit extreme breathing behavior under gas pressure. The very narrow pore form of the activated framework opens up in the presence of carbon dioxide, thus making it a suitable material for CO₂ capture. Sorption of CO₂ at 298 K and relatively high pressure clearly shows a two-step isotherm with giant hysteresis for the second step. In-situ single-crystal diffraction analysis was carried out under CO₂ gas pressure at 298 K using an environmental gas cell in order to visualize the interaction between CO₂ and the host framework. The results are well supported by pressure-gradient differential scanning calorimetry (P-DSC) and variable-pressure powder X-ray analysis. Theoretical calculations have been carried out in order to further back up the crystallographic data.

Crystallography of encapsulated molecules

The crystallography of supramolecular host-guest complexes is reviewed and discussed as a part of small molecule crystallography. In these complexes, the host binds the guests through weak supramolecular interactions, such as hydrogen and halogen bonding, cation-π, anion-π, C-H-π, π-π, C-H-anion interactions and the hydrophobic effect. As the guest often shows severe disorder, large thermal motion and low occupancies, the reliable crystallographic determination of the guest can be very demanding. The analysis of host-guest interactions using tools such as Hirshfeld and cavity volume surface analysis will help to look closely at the most important host-guest interactions. The jewel in the crown of utilizing host-guest interactions in the solid-state is the recently developed Crystalline Sponge Method (CSM) by Makoto Fujita. This method, when successful, gives an accurate and unambiguous 3-D structure of the structurally unknown guest molecule from only micro- or nanogram amounts of the guest molecule. In the case of an optically pure enantiomer, its absolute configuration can be determined.

Solvent exchange in a metal-organic framework single crystal monitored by dynamic in situ X-ray diffraction

Understanding the processes by which porous solid-state materials adsorb and release guest molecules would represent a significant step towards developing rational design principles for functional porous materials. To elucidate the process of liquid exchange in these materials, dynamic in situ X-ray diffraction techniques have been developed which utilize liquid-phase chemical stimuli. Using these time-resolved diffraction techniques, the ethanol solvation process in a flexible metal-organic framework [Co(AIP)(bpy)_0.5(H₂O)]·2H₂O was examined. The measurements provide important insight into the nature of the chemical transformation in this system including the presence of a previously unreported neat ethanol solvate structure.

Controllable construction of half-sandwich octanuclear complexes based on pyridyl-substituted ligands with conjugated centers

Based on three tetradentate ligands with conjugated centers, seven half-sandwich octanuclear complexes were selectively obtained. Several subsequent structural conversions were also successfully conducted.

Application of computational methods to the design and characterisation of porous molecular materials

Composed from discrete units, porous molecular materials (PMMs) possess properties not observed for conventional, extended solids. Molecular simulations provide crucial understanding for the design and characterisation of these unique materials.

Threading the needle: guest transport in a versatile 0D porous molecular crystal

Porous host crystals of the metallocycle [Cu₂(1,3-bis(imidazol-1-ylmethyl)-2,4,6-trimethylbenzene)₂Cl₄]·2CH₃OH are permeable to a series of small organic guests despite their lack of permanent channels.

Arene Selectivity by a Flexible Coordination Polymer Host

The coordination polymers [Ag4 (O2 CCF3 )4 (phen)3 ]⋅ phen⋅arene (1⋅phen⋅arene) (phen=phenazine; arene=toluene, p-xylene or benzene) have been synthesised from the solution phase in a series of arene solvents and crystallographically characterised. By contrast, analogous syntheses from o-xylene and m-xylene as the solvent yield the solvent-free coordination polymer [Ag4 (O2 CCF3 )4 (phen)2 ] (2). Toluene, p-xylene and benzene have been successfully used in mixed-arene syntheses to template the formation of coordination polymers 1⋅phen⋅arene, which incorporate o- or m-xylene. The selectivity of 1⋅phen⋅arene for the arene guests was determined, through pairwise competition experiments, to be p-xylene>toluene≈benzene>o-xylene>m-xylene. The largest selectivity coefficient was determined as 14.2 for p-xylene:m-xylene and the smallest was 1.0 for toluene:benzene.

Construction of tetranuclear metallacycles based on half-sandwich Ir, Rh fragments and pyridyl-substituted ligands with different coordinate vectors

Two-step reactions of [Cp*M(μ-Cl)Cl]₂ (M = Ir, Rh), first with AgOTf and then with pyridyl-substituted ligands of different coordinate vectors, resulted in the formation of distorted tetrahedral and parallelogram type tetranuclear metallacycles.

High-temperature in situ crystallographic observation of reversible gas sorption in impermeable organic cages

Crystallographic observation of adsorbed gas molecules is a highly difficult task due to their rapid motion. Here, we report the in situ single-crystal and synchrotron powder X-ray observations of reversible CO2 sorption processes in an apparently nonporous organic crystal under varying pressures at high temperatures. The host material is formed by hydrogen bond network between 1,3,5-tris-(4-carboxyphenyl)benzene (H3BTB) and N,N-dimethylformamide (DMF) and by π-π stacking between the H3BTB moieties. The material can be viewed as a well-ordered array of cages, which are tight packed with each other so that the cages are inaccessible from outside. Thus, the host is practically nonporous. Despite the absence of permanent pathways connecting the empty cages, they are permeable to CO2 at high temperatures due to thermally activated molecular gating, and the weakly confined CO2 molecules in the cages allow direct detection by in situ single-crystal X-ray diffraction at 323 K. Variable-temperature in situ synchrotron powder X-ray diffraction studies also show that the CO2 sorption is reversible and driven by temperature increase. Solid-state magic angle spinning NMR defines the interactions of CO2 with the organic framework and dynamic motion of CO2 in cages. The reversible sorption is attributed to the dynamic motion of the DMF molecules combined with the axial motions/angular fluctuations of CO2 (a series of transient opening/closing of compartments enabling CO2 molecule passage), as revealed from NMR and simulations. This temperature-driven transient molecular gating can store gaseous molecules in ordered arrays toward unique collective properties and release them for ready use.

Isolation of a structural intermediate during switching of degree of interpenetration in a metal-organic framework

A known pillared layered metal-organic framework [Co2(ndc)2(bpy)] is shown to undergo a change in degree of interpenetration from a highly porous doubly-interpenetrated framework (2fa) to a less porous triply-interpenetrated framework (3fa). The transformation involves an intermediate empty doubly-interpenetrated phase (2fa') which has been isolated for the first time for this kind of phenomenon by altering the conditions of activation of the as-synthesized material. Interestingly, all the transformations occur in single-crystal to single-crystal fashion. Changes in degree of interpenetration have not been explored much to date and their implications with regard to the porosity of MOFs still remain largely unknown. The present study not only provides a better understanding of such dramatic structural changes in MOF materials, but also describes an original way of controlling interpenetration by carefully optimizing the temperature of activation. In addition to studying the structural mechanism of conversion from 2fa to 3fa, sorption analysis has been carried out on both the intermediate (2fa') and the triply-interpenetrated (3fa) forms to further explain the effect that switching of interpenetration mode has on the porosity of the MOF material.

Coordination polymer flexibility leads to polymorphism and enables a crystalline solid-vapour reaction: a multi-technique mechanistic study

Despite an absence of conventional porosity, the 1D coordination polymer [Ag4 (O2 C(CF2 )2 CF3 )4 (TMP)3 ] (1; TMP=tetramethylpyrazine) can absorb small alcohols from the vapour phase, which insert into AgO bonds to yield coordination polymers [Ag4 (O2 C(CF2 )2 CF3 )4 (TMP)3 (ROH)2 ] (1-ROH; R=Me, Et, iPr). The reactions are reversible single-crystal-to-single-crystal transformations. Vapour-solid equilibria have been examined by gas-phase IR spectroscopy (K=5.68(9)×10(-5) (MeOH), 9.5(3)×10(-6) (EtOH), 6.14(5)×10(-5) (iPrOH) at 295 K, 1 bar). Thermal analyses (TGA, DSC) have enabled quantitative comparison of two-step reactions 1-ROH→1→2, in which 2 is the 2D coordination polymer [Ag4 (O2 C(CF2 )2 CF3 )4 (TMP)2 ] formed by loss of TMP ligands exclusively from singly-bridging sites. Four polymorphic forms of 1 (1-A(LT) , 1-A(HT) , 1-B(LT) and 1-B(HT) ; HT=high temperature, LT=low temperature) have been identified crystallographically. In situ powder X-ray diffraction (PXRD) studies of the 1-ROH→1→2 transformations indicate the role of the HT polymorphs in these reactions. The structural relationship between polymorphs, involving changes in conformation of perfluoroalkyl chains and a change in orientation of entire polymers (A versus B forms), suggests a mechanism for the observed reactions and a pathway for guest transport within the fluorous layers. Consistent with this pathway, optical microscopy and AFM studies on single crystals of 1-MeOH/1-A(HT) show that cracks parallel to the layers of interdigitated perfluoroalkyl chains develop during the MeOH release/uptake process.

A Temperature-Responsive Smart Europium Metal-Organic Framework Switch for Reversible Capture and Release of Intrinsic Eu3+ Ions

Stimuli-responsive structural transformations are emerging as a scaffold to develop a charming class of smart materials. A EuL metal-organic framework (MOF) undergoes a reversible temperature-stimulated single-crystal to single-crystal transformation, showing a specific behavior of fast capture/release of free Eu3+ in the channels at low and room temperatures. At room temperature, compound 1a is obtained with one free carboxylate group severing as further hook, featuring one-dimensional square channels filled with intrinsic free europium ions. Trigged by lowering the ambient temperature, 1b is gained. In 1b, the intrinsic free europium ions can be fast captured by the carboxylate-hooks anchored in the framework, resulting in the structural change and its channel distortion. To the best of our knowledge, this is the first report of such a rapid and reversible switch stemming from dynamic control between noncovalent and covalent Eu-ligand interactions. Utilizing EuL MOF to detect highly explosive 2,4,6-trinitrophenol at room temperature and low temperature provides a glimpse into the potential of this material in fluorescence sensors.

A versatile environmental control cell forin situguest exchange single-crystal diffraction

In situsingle-crystal diffraction experiments provide researchers with the opportunity to study the response of crystalline systems, including metal–organic frameworks and other nanoporous materials, to changing local microenvironments. This paper reports a new environmental control cell that is remarkably easy to use, completely reusable, and capable of delivering static or dynamic vacuum, liquids or gases to a single-crystal sample. Furthermore the device is nearly identical in size to standard single-crystal mounts so a full unrestricted range of motion is expected for most commercial goniometers.In situsingle-crystal X-ray diffraction experiments performed under dynamic gas-flow conditions revealed the cell was capable of stabilizing a novel metastable intermediate in the dehydration reaction of a previously reported metal–organic framework.

Structurally simple complexes of CO2

A wide range of structurally characterized adducts of CO₂are discussed in this review, from the strongly bound, charge assisted carbamate complexes through the weaker halide and pseudo-halide complexes to the weakest possible inclusion complexes.

Controlling the assembly of cyclotriveratrylene-derived coordination cages

Ligand-functionalised cyclotriveratrylene derivatives self-assemble to afford coordination cages and topologically non-trivial constructs, including controlled assembly of M₃L₂ metallo-cryptophane and M₆L₈ cages.

Crystallographic studies of gas sorption in metal-organic frameworks

Metal-organic frameworks (MOFs) are a class of porous crystalline materials of modular design. One of the primary applications of these materials is in the adsorption and separation of gases, with potential benefits to the energy, transport and medical sectors. In situ crystallography of MOFs under gas atmospheres has enabled the behaviour of the frameworks under gas loading to be investigated and has established the precise location of adsorbed gas molecules in a significant number of MOFs. This article reviews progress in such crystallographic studies, which has taken place over the past decade, but has its origins in earlier studies of zeolites, clathrates etc. The review considers studies by single-crystal or powder diffraction using either X-rays or neutrons. Features of MOFs that strongly affect gas sorption behaviour are discussed in the context of in situ crystallographic studies, specifically framework flexibility, and the presence of (organic) functional groups and unsaturated (open) metal sites within pores that can form specific interactions with gas molecules.

Construction of iridium and rhodium cyclometalated macrocycles based on p-carborane and N,N′-donor bridging ligands

Construction of shape controllable macrocycles with stacking channels from p-carborane and pyridine-imine ligands.

Structure of organic solids at low temperature and high pressure

This tutorial review summarises the current state of the art in low temperature and high pressure crystallography of molecular organic and coordination compounds.

A 3D MOF showing unprecedented solvent-induced single-crystal-to-single-crystal transformation and excellent CO2 adsorption selectivity at room temperature

A multifunctional MOF material showing rare solvent-induced structural transformation with substitution of bridging-water and guest-exchange at 298 K is reported.