1
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Narayanaswamy S, Technau U. Self-organization of an organizer: Whole-body regeneration from reaggregated cells in cnidarians. Cells Dev 2025:204024. [PMID: 40180217 DOI: 10.1016/j.cdev.2025.204024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2025] [Revised: 03/29/2025] [Accepted: 03/29/2025] [Indexed: 04/05/2025]
Abstract
Cnidarians like the freshwater polyp Hydra and the sea anemone Nematostella, are famous for their enormous capacity to regenerate missing head or feet upon bisection. Classical transplantation experiments have demonstrated that the hypostome, the oral tip of the freshwater polyp Hydra, acts as an axial organizer. Likewise, transplantation of the blastopore lip of an early Nematostella gastrula stage embryo to an aboral position leads to ectopic head formation. Following molecular analyses have shown that Wnt signaling is the key component of this organizer activity. Moreover, when dissociated and reaggregated head (and foot) organizer centres are re-established by self-organization. Similarly, "gastruloids", i.e. aggregates of dissociated early gastrula stage embryos, are able to self-organize. Here, we review the past and recent molecular and theoretical work in the field to explain this phenomenon. While Turing-type reaction-diffusion models involving morphogens like Wnt dominated the field for many years, recent work emphasized the importance of biophysical cues in symmetry breaking and establishment of the organizers in aggregates. The comparison with Nematostella aggregates suggests that the principles of self-organization in cnidarians is not universal.
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Affiliation(s)
- Sanjay Narayanaswamy
- Dept. of Neurosciences and Developmental Biology, Research Platform "Single cell regulation of stem cells", Faculty of Life Sciences, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
| | - Ulrich Technau
- Dept. of Neurosciences and Developmental Biology, Research Platform "Single cell regulation of stem cells", Faculty of Life Sciences, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria.
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2
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Te Vrugt M, Wittkowski R. Metareview: a survey of active matter reviews. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2025; 48:12. [PMID: 40035927 PMCID: PMC11880143 DOI: 10.1140/epje/s10189-024-00466-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 12/04/2024] [Indexed: 03/06/2025]
Abstract
In the past years, the amount of research on active matter has grown extremely rapidly, a fact that is reflected in particular by the existence of more than 1000 reviews on this topic. Moreover, the field has become very diverse, ranging from theoretical studies of the statistical mechanics of active particles to applied work on medical applications of microrobots and from biological systems to artificial swimmers. This makes it very difficult to get an overview over the field as a whole. Here, we provide such an overview in the form of a metareview article that surveys the existing review articles and books on active matter. Thereby, this article provides a useful starting point for finding literature about a specific topic.
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Affiliation(s)
- Michael Te Vrugt
- DAMTP, Centre for Mathematical Sciences, University of Cambridge, Cambridge, CB3 0WA, UK
- Institut für Physik, Johannes Gutenberg-Universität Mainz, 55128, Mainz, Germany
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Center for Soft Nanoscience, Universität Münster, 48149, Münster, Germany.
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3
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Maroudas-Sacks Y, Suganthan S, Garion L, Ascoli-Abbina Y, Westfried A, Dori N, Pasvinter I, Popović M, Keren K. Mechanical strain focusing at topological defect sites in regenerating Hydra. Development 2025; 152:DEV204514. [PMID: 40026208 PMCID: PMC11925399 DOI: 10.1242/dev.204514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 12/31/2024] [Indexed: 03/04/2025]
Abstract
The formation of a new head during Hydra regeneration involves the establishment of a head organizer that functions as a signaling center and contains an aster-shaped topological defect in the organization of the supracellular actomyosin fibers. Here, we show that the future head region in regenerating tissue fragments undergoes multiple instances of extensive stretching and rupture events from the onset of regeneration. These recurring localized tissue deformations arise due to transient contractions of the supracellular ectodermal actomyosin fibers that focus mechanical strain at defect sites. We further show that stabilization of aster-shaped defects is disrupted by perturbations of the Wnt signaling pathway. We propose a closed-loop feedback mechanism promoting head organizer formation, and develop a biophysical model of regenerating Hydra tissues that incorporates a morphogen source activated by mechanical strain and an alignment interaction directing fibers along morphogen gradients. We suggest that this positive-feedback loop leads to mechanical strain focusing at defect sites, enhancing local morphogen production and promoting robust organizer formation.
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Affiliation(s)
- Yonit Maroudas-Sacks
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - S. Suganthan
- Max-Planck Institute for Physics of Complex Systems, MPI-PKS, Nothnitzer Strasse 38, Dresden 01187, Germany
| | - Liora Garion
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - Yael Ascoli-Abbina
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - Ariel Westfried
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - Noam Dori
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - Iris Pasvinter
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
| | - Marko Popović
- Max-Planck Institute for Physics of Complex Systems, MPI-PKS, Nothnitzer Strasse 38, Dresden 01187, Germany
- Cluster of Excellence, Physics of Life, Technische Universitat Dresden, Arnoldstrasse 18, Dresden 01307, Germany
- Center for Systems Biology, Pfotenhauerstrasse 108, Dresden 01307, Germany
| | - Kinneret Keren
- Department of Physics, Technion – Israel Institute of Technology, Haifa 32000, Israel
- Network Biology Research Laboratories and Russell Berrie Nanotechnology Institute, Technion – Israel Institute of Technology, Haifa 32000, Israel
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4
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Golani I, Kafkafi N. On growth and form of animal behavior. Front Integr Neurosci 2025; 18:1476233. [PMID: 39967809 PMCID: PMC11832518 DOI: 10.3389/fnint.2024.1476233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 12/16/2024] [Indexed: 02/20/2025] Open
Abstract
In this study we propose an architecture (bauplan) for the growth and form of behavior in vertebrates and arthropods. We show in what sense behavior is an extension of anatomy. Then we show that movement-based behavior shares linearity and modularity with the skeletal body plan, and with the Hox genes; that it mirrors the geometry of the physical environment; and that it reveals the animal's understanding of the animate and physical situation, with implications for perception, attention, emotion, and primordial cognition. First we define the primitives of movement in relational terms, as in comparative anatomy, yielding homological primitives. Then we define modules, generative rules and the architectural plan of behavior in terms of these primitives. In this way we expose the homology of behaviors, and establish a rigorous trans-phyletic comparative discipline of the morphogenesis of movement-based behavior. In morphogenesis, behavior builds up and narrows incessantly according to strict geometric rules. The same rules apply in moment-to-moment behavior, in ontogenesis, and partly also in phylogenesis. We demonstrate these rules in development, in neurological recovery, with drugs (dopamine-stimulated striatal modulation), in stressful situations, in locomotor behavior, and partly also in human pathology. The buildup of movement culminates in free, undistracted, exuberant behavior. It is observed in play, in superior animals during agonistic interactions, and in humans in higher states of functioning. Geometrization promotes the study of genetics, anatomy, and behavior within one and the same discipline. The geometrical bauplan portrays both already evolved dimensions, and prospective dimensional constraints on evolutionary behavioral innovations.
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Affiliation(s)
| | - Neri Kafkafi
- School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel Aviv, Israel
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5
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DiFrisco J, Gawne R. Biological agency: a concept without a research program. J Evol Biol 2025; 38:143-156. [PMID: 39658090 DOI: 10.1093/jeb/voae153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Revised: 11/22/2024] [Accepted: 12/09/2024] [Indexed: 12/12/2024]
Abstract
This paper evaluates recent work purporting to show that the "agency" of organisms is an important phenomenon for evolutionary biology to study. Biological agency is understood as the capacity for goal-directed, self-determining activity-a capacity that is present in all organisms irrespective of their complexity and whether or not they have a nervous system. Proponents of the "agency perspective" on biological systems have claimed that agency is not explainable by physiological or developmental mechanisms, or by adaptation via natural selection. We show that this idea is theoretically unsound and unsupported by current biology. There is no empirical evidence that the agency perspective has the potential to advance experimental research in the life sciences. Instead, the phenomena that the agency perspective purports to make sense of are better explained using the well-established idea that complex multiscale feedback mechanisms evolve through natural selection.
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Affiliation(s)
- James DiFrisco
- Theoretical Biology Laboratory, The Francis Crick Institute, London, United Kingdom
| | - Richard Gawne
- Department of Natural History, Nevada State Museum - Las Vegas, Las Vegas, United States
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6
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Agam O, Braun E. Stochastic morphological swings in Hydra regeneration: A manifestation of noisy canalized morphogenesis. Proc Natl Acad Sci U S A 2025; 122:e2415736121. [PMID: 39739793 PMCID: PMC11725787 DOI: 10.1073/pnas.2415736121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 10/26/2024] [Indexed: 01/02/2025] Open
Abstract
Animal morphogenesis, the development of an organism's body form, is commonly perceived as a directed and almost deterministic process. However, noise and stochastic fluctuations are ubiquitous in biological systems. The questions on the role of fluctuations in morphogenesis and what ensures the robustness of this process under noisy conditions remain elusive. Here, we utilize Hydra regeneration, subjected to an external electric field, to provide unique insights into these questions. We found that during Hydra morphogenesis, a phase can be induced where fluctuations lead to stochastic morphological swings, back and forth, between a nearly spherical structure (the incipient tissue's state) and an elongated cylindrical shape (the final body form of a mature Hydra). Despite these prolonged swings, the tissue regenerates into a normal Hydra. The stochastic transitions between two well-defined shapes imply that morphological development occurs through an activation process. Indeed, by introducing a periodic perturbation through modulation of the electric field, we were able to demonstrate morphogenesis dynamics with characteristics of stochastic resonance-the tissue's response to the perturbation displayed a resonance-like behavior as a function of the noise level. Our findings add a dynamic layer to the problem of morphogenesis and offer an unconventional physical framework based on an activation transition in a slowly varying double-well potential that ensures a canalized regeneration of the body form under fluctuations.
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Affiliation(s)
- Oded Agam
- The Racah Institute of Physics, Edmond J. Safra Campus, The Hebrew University of Jerusalem, Jerusalem9190401, Israel
| | - Erez Braun
- Department of Physics and Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa32000, Israel
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7
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Nguyen NM, Farge E. Mechanical induction in metazoan development and evolution: from earliest multi-cellular organisms to modern animal embryos. Nat Commun 2024; 15:10695. [PMID: 39702750 PMCID: PMC11659590 DOI: 10.1038/s41467-024-55100-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 11/27/2024] [Indexed: 12/21/2024] Open
Abstract
The development and origin of animal body forms have long been intensely explored, from the analysis of morphological traits during antiquity to Newtonian mechanical conceptions of morphogenesis. Advent of molecular biology then focused most interests on the biochemical patterning and genetic regulation of embryonic development. Today, a view is arising of development of multicellular living forms as a phenomenon emerging from non-hierarchical, reciprocal mechanical and mechanotransductive interactions between biochemical patterning and biomechanical morphogenesis. Here we discuss the nature of these processes and put forward findings on how early biochemical and biomechanical patterning of metazoans may have emerged from a primitive behavioural mechanotransducive feeding response to marine environment which might have initiated the development of first animal multicellular organisms.
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Affiliation(s)
- Ngoc Minh Nguyen
- Mechanics and Genetics of Embryonic Development group, Institut Curie, Centre OCAV PSL Research University, Sorbonne University, CNRS UMR168 Physics of Cells and Cancer, Inserm, 11 rue Pierre et Marie Curie, 75005, Paris, France
| | - Emmanuel Farge
- Mechanics and Genetics of Embryonic Development group, Institut Curie, Centre OCAV PSL Research University, Sorbonne University, CNRS UMR168 Physics of Cells and Cancer, Inserm, 11 rue Pierre et Marie Curie, 75005, Paris, France.
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8
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Norton MM, Grover P. Mechanochemical topological defects in an active nematic. Phys Rev E 2024; 110:054605. [PMID: 39690574 DOI: 10.1103/physreve.110.054605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2024] [Accepted: 09/24/2024] [Indexed: 12/19/2024]
Abstract
We propose a reaction-diffusion system that converts topological information of an active nematic into chemical signals. We show that a curvature-activated reaction dipole is sufficient for creating a system that dynamically senses topology by producing a concentration field possessing local extrema coinciding with ±1/2 defects. The enabling term is analogous to polarization charge density seen in dielectric materials. We demonstrate the ability of this system to identify defects in both passive and active nematics. Our results illustrate that a relatively simple feedback scheme, expressed as a system of partial differential equations, is capable of producing chemical signals in response to inherently nonlocal structures in anisotropic media. We posit that such coarse-grained systems can help generate testable hypotheses for regulated processes in biological systems, such as morphogenesis, and motivate the creation of bio-inspired materials that utilize dynamic coupling between nematic structure and biochemistry.
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9
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Phillips R. Seeing with an extra sense. Curr Biol 2024; 34:R934-R944. [PMID: 39437733 DOI: 10.1016/j.cub.2024.07.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
Science foremost derives from our curiosity about the world. Can we make sense of the phenomena we see around us? Given that understanding, can we predict previously unimagined phenomena? How do things work? Can we use what we discover to invent new technologies? One class of questions that has mesmerized observers, dating at least to early cave paintings of hunters and their prey, surrounds the nature of the phenomenon we refer to as life. Over the centuries, scientists have found a broad array of surprisingly different techniques for observing, measuring, characterizing and explaining the living world. Microscopes provide a dazzling view of a previously unseen reality that tells us how living organisms are made up and how their components are organized and move. The tools of molecular science tell us the sequence and structure of the macromolecules that fill cells. The data explosion that has attended the development of a new generation of high-throughput tools for querying the living world demands that we have some way of accounting for those data that both provide intuition and make dangerous predictions with no after-the-fact parametric wiggle room. In this special issue of Current Biology, leading researchers explore how physical approaches have contributed to various fields of biology. Here, to introduce this special issue, I consider some of the ways in which viewing the living through a physical lens allows us to see things that might otherwise remain hidden.
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Affiliation(s)
- Rob Phillips
- Division of Biology and Biological Engineering and Department of Physics, California Institute of Technology, Pasadena, CA, USA.
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10
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Cao D, Garai S, DiFrisco J, Veenvliet JV. The logic of monsters: development and morphological diversity in stem-cell-based embryo models. Interface Focus 2024; 14:20240023. [PMID: 39464644 PMCID: PMC11503023 DOI: 10.1098/rsfs.2024.0023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 09/16/2024] [Accepted: 09/17/2024] [Indexed: 10/29/2024] Open
Abstract
Organoids and stem-cell-based embryo models (SEMs) are imperfect organ or embryo representations that explore a much larger space of possible forms, or morphospace, compared to their in vivo counterparts. Here, we discuss SEM biology in light of seminal work by Pere Alberch, a leading figure in early evo-devo, interpreting SEMs as developmental 'monstrosities' in the Alberchian sense. Alberch suggested that ordered patterns in aberrant development-i.e. 'the logic of monsters'-reveal developmental constraints on possible morphologies. In the same vein, we detail how SEMs have begun to shed light on structural features of normal development, such as developmental variability, the relative importance of internal versus external constraints, boundary conditions and design principles governing robustness and canalization. We argue that SEMs represent a powerful experimental tool to explore and expand developmental morphospace and propose that the 'monstrosity' of SEMs can be leveraged to uncover the 'hidden' rules and developmental constraints that robustly shape and pattern the embryo.
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Affiliation(s)
- Dominica Cao
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT06520, USA
| | - Sumit Garai
- Theoretical Biology Lab, The Francis Crick Institute, LondonNW1 1AT, UK
- Division of Biosciences, Medical Sciences Building, University College London, Gower Street, LondonWC1E 6BT, UK
| | - James DiFrisco
- Theoretical Biology Lab, The Francis Crick Institute, LondonNW1 1AT, UK
| | - Jesse V. Veenvliet
- Stembryogenesis Lab, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden01307, Germany
- Center for Systems Biology Dresden, Dresden01307, Germany
- Cluster of Excellence Physics of Life, Technische Universität Dresden, Dresden01307, Germany
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11
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Agam O, Braun E. Universal calcium fluctuations in Hydramorphogenesis. Phys Biol 2023; 20:066002. [PMID: 37696269 DOI: 10.1088/1478-3975/acf8a4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 09/11/2023] [Indexed: 09/13/2023]
Abstract
Understanding the collective physical processes that drive robust morphological transitions in animal development necessitates the characterization of the relevant fields involved in morphogenesis. Calcium (Ca2+) is recognized as one such field. In this study, we demonstrate that the spatial fluctuations of Ca2+duringHydraregeneration exhibit universal characteristics. To investigate this phenomenon, we employ two distinct controls, an external electric field andheptanol, a gap junction-blocking drug. Both lead to the modulation of the Ca2+activity and a reversible halting of the regeneration process. The application of an electric field enhances Ca2+activity in theHydra's tissue and increases its spatial correlations, while the administration ofheptanolinhibits its activity and diminishes the spatial correlations. Remarkably, the statistical characteristics of Ca2+spatial fluctuations, including the coefficient of variation and skewness, manifest universal shape distributions across tissue samples and conditions. We introduce a field-theoretic model, describing fluctuations in a tilted double-well potential, which successfully captures these universal properties. Moreover, our analysis reveals that the Ca2+activity is spatially localized, and theHydra's tissue operates near the onset of bistability, where the local Ca2+activity fluctuates between low and high excited states in distinct regions. These findings highlight the prominent role of the Ca2+field inHydramorphogenesis and provide insights into the underlying mechanisms governing robust morphological transitions.
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Affiliation(s)
- Oded Agam
- The Racah Institute of Physics, Edmond J. Safra Campus, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Erez Braun
- Department of Physics and Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 32000, Israel
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12
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Holstein TW. The Hydra stem cell system - Revisited. Cells Dev 2023; 174:203846. [PMID: 37121433 DOI: 10.1016/j.cdev.2023.203846] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 04/12/2023] [Accepted: 04/25/2023] [Indexed: 05/02/2023]
Abstract
Cnidarians are >600 million years old and are considered the sister group of Bilateria based on numerous molecular phylogenetic studies. Apart from Hydra, the genomes of all major clades of Cnidaria have been uncovered (e.g. Aurelia, Clytia, Nematostella and Acropora) and they reveal a remarkable completeness of the metazoan genomic toolbox. Of particular interest is Hydra, a model system of aging research, regenerative biology, and stem cell biology. With the knowledge gained from scRNA research, it is now possible to characterize the expression profiles of all cell types with great precision. In functional studies, our picture of the Hydra stem cell biology has changed, and we are in the process of obtaining a clear picture of the homeostasis and properties of the different stem cell populations. Even though Hydra is often compared to plant systems, the new data on germline and regeneration, but also on the dynamics and plasticity of the nervous system, show that Hydra with its simple body plan represents in a nutshell the prototype of an animal with stem cell lineages, whose properties correspond in many ways to Bilateria. This review provides an overview of the four stem cell lineages, the two epithelial lineages that constitute the ectoderm and the endoderm, as well as the multipotent somatic interstitial lineage (MPSC) and the germline stem cell lineage (GSC), also known as the interstitial cells of Hydra.
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Affiliation(s)
- Thomas W Holstein
- Heidelberg University, Centre for Organismal Studies (COS), Molecular Evolution and Genomics, Im Neuenheimer Feld 230, D-69120 Heidelberg, Germany.
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13
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Krommydas D, Carenza LN, Giomi L. Hydrodynamic Enhancement of p-atic Defect Dynamics. PHYSICAL REVIEW LETTERS 2023; 130:098101. [PMID: 36930922 DOI: 10.1103/physrevlett.130.098101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
Abstract
We investigate numerically and analytically the effects of hydrodynamics on the dynamics of topological defects in p-atic liquid crystals, i.e., two-dimensional liquid crystals with p-fold rotational symmetry. Importantly, we find that hydrodynamics fuels a generic passive self-propulsion mechanism for defects of winding number s=(p-1)/p and arbitrary p. Strikingly, we discover that hydrodynamics always accelerates the annihilation dynamics of pairs of ±1/p defects and that, contrary to expectations, this effect increases with p. Our Letter paves the way toward understanding cell intercalation and other remodeling events in epithelial layers.
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Affiliation(s)
- Dimitrios Krommydas
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA Leiden, Netherlands
| | - Livio Nicola Carenza
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA Leiden, Netherlands
| | - Luca Giomi
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA Leiden, Netherlands
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14
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Khoromskaia D, Salbreux G. Active morphogenesis of patterned epithelial shells. eLife 2023; 12:75878. [PMID: 36649186 PMCID: PMC9844985 DOI: 10.7554/elife.75878] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 11/18/2022] [Indexed: 01/11/2023] Open
Abstract
Shape transformations of epithelial tissues in three dimensions, which are crucial for embryonic development or in vitro organoid growth, can result from active forces generated within the cytoskeleton of the epithelial cells. How the interplay of local differential tensions with tissue geometry and with external forces results in tissue-scale morphogenesis remains an open question. Here, we describe epithelial sheets as active viscoelastic surfaces and study their deformation under patterned internal tensions and bending moments. In addition to isotropic effects, we take into account nematic alignment in the plane of the tissue, which gives rise to shape-dependent, anisotropic active tensions and bending moments. We present phase diagrams of the mechanical equilibrium shapes of pre-patterned closed shells and explore their dynamical deformations. Our results show that a combination of nematic alignment and gradients in internal tensions and bending moments is sufficient to reproduce basic building blocks of epithelial morphogenesis, including fold formation, budding, neck formation, flattening, and tubulation.
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Affiliation(s)
| | - Guillaume Salbreux
- The Francis Crick InstituteLondonUnited Kingdom
- University of GenevaGenevaSwitzerland
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15
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Vafa F, Mahadevan L. Active Nematic Defects and Epithelial Morphogenesis. PHYSICAL REVIEW LETTERS 2022; 129:098102. [PMID: 36083666 DOI: 10.1103/physrevlett.129.098102] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 04/11/2022] [Accepted: 05/25/2022] [Indexed: 06/15/2023]
Abstract
Inspired by recent experiments that highlight the role of nematic defects in the morphogenesis of epithelial tissues, we develop a minimal framework to study the dynamics of an active curved surface driven by its nematic texture. Allowing the surface to evolve via relaxational dynamics leads to a theory linking nematic defect dynamics, cellular division rates, and Gaussian curvature. Regions of large positive (negative) curvature and positive (negative) growth are colocalized with the presence of positive (negative) defects. In an ex-vivo setting of cultured murine neural progenitor cells, we show that our framework is consistent with the observed cell accumulation at positive defects and depletion at negative defects. In an in-vivo setting, we show that the defect configuration consisting of a bound +1 defect state, which is stabilized by activity, surrounded by two -1/2 defects can create a stationary ring configuration of tentacles, consistent with observations of a basal marine invertebrate Hydra.
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Affiliation(s)
- Farzan Vafa
- Department of Physics, University of California Santa Barbara, Santa Barbara, California 93106, USA
- Center of Mathematical Sciences and Applications, Harvard University, Cambridge, Massachusetts 02138, USA
| | - L Mahadevan
- School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA
- Departments of Physics, and Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA
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16
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Plasticity of body axis polarity in Hydra regeneration under constraints. Sci Rep 2022; 12:13368. [PMID: 35922470 PMCID: PMC9349251 DOI: 10.1038/s41598-022-17411-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 07/25/2022] [Indexed: 11/17/2022] Open
Abstract
One of the major events in animal morphogenesis is the emergence of a polar body axis. Here, we combine classic grafting techniques with live imaging to explore the plasticity of polarity determination during whole body regeneration in Hydra. Composite tissues are made by fusing two rings, excised from separate animals, in different configurations that vary in the polarity and original positions of the rings along the body axes of the parent animals. Under frustrating initial configurations, body axis polarity that is otherwise stably inherited from the parent animal, can become labile and even be reversed. Importantly, the site of head regeneration exhibits a strong bias toward the edges of the tissue, even when this involves polarity reversal. In particular, we observe head formation at an originally aboral tissue edge, which is not compatible with models of Hydra regeneration based only on preexisting morphogen gradients or an injury response. The site of the new head invariably contains an aster-like defect in the organization of the supra-cellular ectodermal actin fibers. While a defect is neither required nor sufficient for head formation, we show that the defect at the new head site can arise via different routes, either appearing directly following excision as the tissue seals at its edge or through de novo defect formation at the fusion site. Altogether, our results show that the emergence of a polar body axis depends on the original polarity and position of the excised tissues as well as structural factors, suggesting that axis determination is an integrated process that arises from the dynamic interplay of multiple biochemical and mechanical processes.
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17
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Hoffmann LA, Carenza LN, Eckert J, Giomi L. Theory of defect-mediated morphogenesis. SCIENCE ADVANCES 2022; 8:eabk2712. [PMID: 35427161 PMCID: PMC9012457 DOI: 10.1126/sciadv.abk2712] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Growing experimental evidence indicates that topological defects could serve as organizing centers in the morphogenesis of tissues. Here, we provide a quantitative explanation for this phenomenon, rooted in the buckling theory of deformable active polar liquid crystals. Using a combination of linear stability analysis and computational fluid dynamics, we demonstrate that active layers, such as confined cell monolayers, are unstable to the formation of protrusions in the presence of disclinations. The instability originates from an interplay between the focusing of the elastic forces, mediated by defects, and the renormalization of the system's surface tension by the active flow. The posttransitional regime is also characterized by several complex morphodynamical processes, such as oscillatory deformations, droplet nucleation, and active turbulence. Our findings offer an explanation of recent observations on tissue morphogenesis and shed light on the dynamics of active surfaces in general.
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Affiliation(s)
- Ludwig A. Hoffmann
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA, Leiden, Netherlands
| | - Livio Nicola Carenza
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA, Leiden, Netherlands
| | - Julia Eckert
- Physics of Life Processes, Leiden Institute of Physics, Universiteit Leiden, P.O. Box 9506, 2300 RA, Leiden, Netherlands
| | - Luca Giomi
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA, Leiden, Netherlands
- Corresponding author.
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18
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Shani-Zerbib L, Garion L, Maroudas-Sacks Y, Braun E, Keren K. Canalized Morphogenesis Driven by Inherited Tissue Asymmetries in Hydra Regeneration. Genes (Basel) 2022; 13:360. [PMID: 35205404 PMCID: PMC8872179 DOI: 10.3390/genes13020360] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 02/10/2022] [Accepted: 02/12/2022] [Indexed: 12/04/2022] Open
Abstract
The emergence and stabilization of a body axis is a major step in animal morphogenesis, determining the symmetry of the body plan as well as its polarity. To advance our understanding of the emergence of body axis polarity, we study regenerating Hydra. Axis polarity is strongly memorized in Hydra regeneration even in small tissue segments. What type of processes confer this memory? To gain insight into the emerging polarity, we utilize frustrating initial conditions by studying regenerating tissue strips which fold into hollow spheroids by adhering their distal ends of opposite original polarities. Despite the convoluted folding process and the tissue rearrangements during regeneration, these tissue strips develop in a reproducible manner, preserving the original polarity and yielding an ordered body plan. These observations suggest that the integration of mechanical and biochemical processes supported by their mutual feedback attracts the tissue dynamics towards a well-defined developmental trajectory biased by weak inherited cues from the parent animal. Hydra thus provide an example of dynamic canalization in which the dynamic rules are instilled, but, in contrast to the classical picture, the detailed developmental trajectory does not unfold in a programmatic manner.
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Affiliation(s)
- Lital Shani-Zerbib
- Department of Physics, Technion—Israel Institute of Technology, Haifa 32000, Israel; (L.S.-Z.); (L.G.); (Y.M.-S.); (E.B.)
| | - Liora Garion
- Department of Physics, Technion—Israel Institute of Technology, Haifa 32000, Israel; (L.S.-Z.); (L.G.); (Y.M.-S.); (E.B.)
| | - Yonit Maroudas-Sacks
- Department of Physics, Technion—Israel Institute of Technology, Haifa 32000, Israel; (L.S.-Z.); (L.G.); (Y.M.-S.); (E.B.)
| | - Erez Braun
- Department of Physics, Technion—Israel Institute of Technology, Haifa 32000, Israel; (L.S.-Z.); (L.G.); (Y.M.-S.); (E.B.)
- Network Biology Research Laboratories, Technion—Israel Institute of Technology, Haifa 32000, Israel
| | - Kinneret Keren
- Department of Physics, Technion—Israel Institute of Technology, Haifa 32000, Israel; (L.S.-Z.); (L.G.); (Y.M.-S.); (E.B.)
- Network Biology Research Laboratories, Technion—Israel Institute of Technology, Haifa 32000, Israel
- The Russell Berrie Nanotechnology Institute, Technion—Israel Institute of Technology, Haifa 32000, Israel
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19
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Veerman F, Mercker M, Marciniak-Czochra A. Beyond Turing: far-from-equilibrium patterns and mechano-chemical feedback. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2021; 379:20200278. [PMID: 34743599 DOI: 10.1098/rsta.2020.0278] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Turing patterns are commonly understood as specific instabilities of a spatially homogeneous steady state, resulting from activator-inhibitor interaction destabilized by diffusion. We argue that this view is restrictive and its agreement with biological observations is problematic. We present two alternatives to the classical Turing analysis of patterns. First, we employ the abstract framework of evolution equations to enable the study of far-from-equilibrium patterns. Second, we introduce a mechano-chemical model, with the surface on which the pattern forms being dynamic and playing an active role in the pattern formation, effectively replacing the inhibitor. We highlight the advantages of these two alternatives vis-à-vis the classical Turing analysis, and give an overview of recent results and future challenges for both approaches. This article is part of the theme issue 'Recent progress and open frontiers in Turing's theory of morphogenesis'.
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Affiliation(s)
- Frits Veerman
- University of Leiden, Mathematical Institute, Niels Bohrweg 1, Leiden 2333 CA, The Netherlands
| | - Moritz Mercker
- Institute for Applied Mathematics and Interdisciplinary Center for Scientific Computing (IWR), Heidelberg University, Im Neuenheimer Feld 205, Heidelberg 69120, Germany
| | - Anna Marciniak-Czochra
- Institute for Applied Mathematics and Interdisciplinary Center for Scientific Computing (IWR), Heidelberg University, Im Neuenheimer Feld 205, Heidelberg 69120, Germany
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20
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Ferenc J, Papasaikas P, Ferralli J, Nakamura Y, Smallwood S, Tsiairis CD. Mechanical oscillations orchestrate axial patterning through Wnt activation in Hydra. SCIENCE ADVANCES 2021; 7:eabj6897. [PMID: 34890235 PMCID: PMC8664257 DOI: 10.1126/sciadv.abj6897] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 10/21/2021] [Indexed: 05/25/2023]
Abstract
Mechanical input shapes cell fate decisions during development and regeneration in many systems, yet the mechanisms of this cross-talk are often unclear. In regenerating Hydra tissue spheroids, periodic osmotically driven inflation and deflation cycles generate mechanical stimuli in the form of tissue stretching. Here, we demonstrate that tissue stretching during inflation is important for the appearance of the head organizer—a group of cells that secrete the Wnt3 ligand. Exploiting time series RNA expression profiles, we identify the up-regulation of Wnt signaling as a key readout of the mechanical input. In this system, the levels of Wnt3 expression correspond to the levels of stretching, and Wnt3 overexpression alone enables successful regeneration in the absence of mechanical stimulation. Our findings enable the incorporation of mechanical signals in the framework of Hydra patterning and highlight the broad significance of mechanochemical feedback loops for patterning epithelial lumens.
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Affiliation(s)
- Jaroslav Ferenc
- Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
- University of Basel, Petersplatz 1, 4001 Basel, Switzerland
| | - Panagiotis Papasaikas
- Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
- SIB Swiss Institute of Bioinformatics, 4058 Basel, Switzerland
| | - Jacqueline Ferralli
- Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
| | - Yukio Nakamura
- Institute of Medical Sciences, University of Aberdeen, AB25 2ZD Aberdeen, UK
| | - Sebastien Smallwood
- Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
| | - Charisios D. Tsiairis
- Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
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21
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Abstract
Morphogenesis is one of the most remarkable examples of biological pattern formation. Despite substantial progress in the field, we still do not understand the organizational principles responsible for the robust convergence of the morphogenesis process across scales to form viable organisms under variable conditions. Achieving large-scale coordination requires feedback between mechanical and biochemical processes, spanning all levels of organization and relating the emerging patterns with the mechanisms driving their formation. In this review, we highlight the role of mechanics in the patterning process, emphasizing the active and synergistic manner in which mechanical processes participate in developmental patterning rather than merely following a program set by biochemical signals. We discuss the value of applying a coarse-grained approach toward understanding this complex interplay, which considers the large-scale dynamics and feedback as well as complementing the reductionist approach focused on molecular detail. A central challenge in this approach is identifying relevant coarse-grained variables and developing effective theories that can serve as a basis for an integrated framework for understanding this remarkable pattern-formation process. Expected final online publication date for the Annual Review of Cell and Developmental Biology, Volume 37 is October 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Yonit Maroudas-Sacks
- Department of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel;
| | - Kinneret Keren
- Department of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel; .,Network Biology Research Laboratories and The Russell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa 32000, Israel
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22
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Lenne PF, Munro E, Heemskerk I, Warmflash A, Bocanegra-Moreno L, Kishi K, Kicheva A, Long Y, Fruleux A, Boudaoud A, Saunders TE, Caldarelli P, Michaut A, Gros J, Maroudas-Sacks Y, Keren K, Hannezo E, Gartner ZJ, Stormo B, Gladfelter A, Rodrigues A, Shyer A, Minc N, Maître JL, Di Talia S, Khamaisi B, Sprinzak D, Tlili S. Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Phys Biol 2021; 18. [PMID: 33276350 PMCID: PMC8380410 DOI: 10.1088/1478-3975/abd0db] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 12/04/2020] [Indexed: 12/12/2022]
Abstract
The way in which interactions between mechanics and biochemistry lead to the emergence of complex cell and tissue organization is an old question that has recently attracted renewed interest from biologists, physicists, mathematicians and computer scientists. Rapid advances in optical physics, microscopy and computational image analysis have greatly enhanced our ability to observe and quantify spatiotemporal patterns of signalling, force generation, deformation, and flow in living cells and tissues. Powerful new tools for genetic, biophysical and optogenetic manipulation are allowing us to perturb the underlying machinery that generates these patterns in increasingly sophisticated ways. Rapid advances in theory and computing have made it possible to construct predictive models that describe how cell and tissue organization and dynamics emerge from the local coupling of biochemistry and mechanics. Together, these advances have opened up a wealth of new opportunities to explore how mechanochemical patterning shapes organismal development. In this roadmap, we present a series of forward-looking case studies on mechanochemical patterning in development, written by scientists working at the interface between the physical and biological sciences, and covering a wide range of spatial and temporal scales, organisms, and modes of development. Together, these contributions highlight the many ways in which the dynamic coupling of mechanics and biochemistry shapes biological dynamics: from mechanoenzymes that sense force to tune their activity and motor output, to collectives of cells in tissues that flow and redistribute biochemical signals during development.
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Affiliation(s)
- Pierre-François Lenne
- Aix-Marseille University, CNRS, IBDM, Turing Center for Living Systems, Marseille, France
| | - Edwin Munro
- Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, United States of America
| | - Idse Heemskerk
- Department of Cell & Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, United States of America
| | - Aryeh Warmflash
- Department of Biosciences and Bioengineering, Rice University, Houston, TX, 77005, United States of America
| | | | - Kasumi Kishi
- IST Austria, Am Campus 1, 3400 Klosterneuburg, Austria
| | - Anna Kicheva
- IST Austria, Am Campus 1, 3400 Klosterneuburg, Austria
| | - Yuchen Long
- Reproduction et Dévelopement des Plantes, Université de Lyon, École normale supérieure de Lyon, Université Claude Bernard Lyon 1, INRAe, CNRS, 69364 Lyon Cedex 07, France
| | - Antoine Fruleux
- Reproduction et Dévelopement des Plantes, Université de Lyon, École normale supérieure de Lyon, Université Claude Bernard Lyon 1, INRAe, CNRS, 69364 Lyon Cedex 07, France.,LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
| | - Arezki Boudaoud
- Reproduction et Dévelopement des Plantes, Université de Lyon, École normale supérieure de Lyon, Université Claude Bernard Lyon 1, INRAe, CNRS, 69364 Lyon Cedex 07, France.,LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
| | - Timothy E Saunders
- Mechanobiology Institute, National University of Singapore, 117411, Singapore
| | - Paolo Caldarelli
- Cellule Pasteur UPMC, Sorbonne Université, rue du Dr Roux, 75015 Paris, France.,Department of Developmental and Stem Cell Biology Institut Pasteur, 75724 Paris, Cedex 15, France.,CNRS UMR3738, 75015 Paris, France
| | - Arthur Michaut
- Department of Developmental and Stem Cell Biology Institut Pasteur, 75724 Paris, Cedex 15, France.,CNRS UMR3738, 75015 Paris, France
| | - Jerome Gros
- Department of Developmental and Stem Cell Biology Institut Pasteur, 75724 Paris, Cedex 15, France.,CNRS UMR3738, 75015 Paris, France
| | - Yonit Maroudas-Sacks
- Department of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel
| | - Kinneret Keren
- Department of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel.,Network Biology Research Laboratories and The Russell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa 32000, Israel
| | - Edouard Hannezo
- Institute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria
| | - Zev J Gartner
- Department of Pharmaceutical Chemistry, University of California, San Francisco, 600 16th St. Box 2280, San Francisco, CA 94158, United States of America
| | - Benjamin Stormo
- Department of Biology, University of North Carolina-Chapel Hill, Chapel Hill, NC 27599 United States of America
| | - Amy Gladfelter
- Department of Biology, University of North Carolina-Chapel Hill, Chapel Hill, NC 27599 United States of America
| | - Alan Rodrigues
- Laboratory of Morphogenesis, The Rockefeller University, 1230 York Avenue, New York, NY 10065, United States of America
| | - Amy Shyer
- Laboratory of Morphogenesis, The Rockefeller University, 1230 York Avenue, New York, NY 10065, United States of America
| | - Nicolas Minc
- Institut Jacques Monod, Université de Paris, CNRS UMR7592, 15 rue Hélène Brion, 75205 Paris Cedex 13, France
| | - Jean-Léon Maître
- Institut Curie, PSL Research University, Sorbonne Université, CNRS UMR3215, INSERM U934, Paris, France
| | - Stefano Di Talia
- Department of Cell Biology, Duke University Medical Center, Durham NC 27710, United States of America
| | - Bassma Khamaisi
- School of Neurobiology, Biochemistry and Biophysics, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 6997801, Israel
| | - David Sprinzak
- School of Neurobiology, Biochemistry and Biophysics, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Sham Tlili
- Aix-Marseille University, CNRS, IBDM, Turing Center for Living Systems, Marseille, France
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23
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Dong Z, Coates D. Bioactive Molecular Discovery Using Deer Antlers as a Model of Mammalian Regeneration. J Proteome Res 2021; 20:2167-2181. [PMID: 33769828 DOI: 10.1021/acs.jproteome.1c00003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The ability to activate and regulate stem cells during wound healing and tissue regeneration is a promising field that is resulting in innovative approaches in the field of regenerative medicine. The regenerative capacity of invertebrates has been well documented; however, in mammals, stem cells that drive organ regeneration are rare. Deer antlers are the only known mammalian structure that can annually regenerate to produce a tissue containing dermis, blood vessels, nerves, cartilage, and bone. The neural crest derived stem cells that drive this process result in antlers growing at up to 2 cm/day. Deer antlers thus provide superior attributes compared to lower-order animal models, when investigating the regulation of stem cell-based regeneration. Antler stem cells can therefore be used as a model to investigate the bioactive molecules, biological processes, and pathways involved in the maintenance of a stem cell niche, and their activation and differentiation during organ formation. This review examines stem cell-based regeneration with a focus on deer antlers, a neural crest stem cell-based mammalian regenerative structure. It then discusses the omics technical platforms highlighting the proteomics approaches used for investigating the molecular mechanisms underlying stem cell regulation in antler tissues.
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Affiliation(s)
- Zhen Dong
- Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin 9016, New Zealand
| | - Dawn Coates
- Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin 9016, New Zealand
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24
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The Actomyosin Cortex of Cells: A Thin Film of Active Matter. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-020-00220-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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25
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Polyhedral liquid droplets: Recent advances in elucidation and application. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2020.05.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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26
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Dong Z, Haines S, Coates D. Proteomic Profiling of Stem Cell Tissues during Regeneration of Deer Antler: A Model of Mammalian Organ Regeneration. J Proteome Res 2020; 19:1760-1775. [DOI: 10.1021/acs.jproteome.0c00026] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Zhen Dong
- Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin, New Zealand
| | - Stephen Haines
- Proteins & Metabolites, AgResearch Lincoln Research Centre, Lincoln, New Zealand
| | - Dawn Coates
- Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin, New Zealand
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27
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Guzmán-Herrera A, Mao Y. Polarity during tissue repair, a multiscale problem. Curr Opin Cell Biol 2020; 62:31-36. [PMID: 31514044 PMCID: PMC7036748 DOI: 10.1016/j.ceb.2019.07.015] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 07/18/2019] [Accepted: 07/23/2019] [Indexed: 12/12/2022]
Abstract
Tissue repair is essential for all organisms, as it protects the integrity and function of tissues and prevents infections and diseases. It takes place at multiple scales, from macroscopic to microscopic levels. Most mechanisms driving tissue repair rely on the correct polarisation of collective cell behaviours, such as migration and proliferation, and polarisation of cytoskeletal and junctional components. Furthermore, re-establishment and maintenance of cell polarity are fundamental for a tissue to be fully repaired and for withstanding mechanical stress during homeostasis and repair. Recent evidence highlights an important role for the interplay between cell polarity and tissue mechanics that are critical in tissue repair.
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Affiliation(s)
- Alejandra Guzmán-Herrera
- MRC Laboratory for Molecular Cell Biology, University College London, London WC1E 6BT, UK; Institute for the Physics of Living Systems, University College London, London, UK
| | - Yanlan Mao
- MRC Laboratory for Molecular Cell Biology, University College London, London WC1E 6BT, UK; Institute for the Physics of Living Systems, University College London, London, UK; College of Information and Control, Nanjing University of Information Science and Technology, Nanjing, Jiangsu 210044, People's Republic of China.
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28
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Metselaar L, Yeomans JM, Doostmohammadi A. Topology and Morphology of Self-Deforming Active Shells. PHYSICAL REVIEW LETTERS 2019; 123:208001. [PMID: 31809098 DOI: 10.1103/physrevlett.123.208001] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Indexed: 06/10/2023]
Abstract
We present a generic framework for modeling three-dimensional deformable shells of active matter that captures the orientational dynamics of the active particles and hydrodynamic interactions on the shell and with the surrounding environment. We find that the cross talk between the self-induced flows of active particles and dynamic reshaping of the shell can result in conformations that are tunable by varying the form and magnitude of active stresses. We further demonstrate and explain how self-induced topological defects in the active layer can direct the morphodynamics of the shell. These findings are relevant to understanding morphological changes during organ development and the design of bioinspired materials that are capable of self-organization.
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Affiliation(s)
- Luuk Metselaar
- Rudolf Peierls Centre for Theoretical Physics, Parks Road, Oxford OX1 3PU, United Kingdom
| | - Julia M Yeomans
- Rudolf Peierls Centre for Theoretical Physics, Parks Road, Oxford OX1 3PU, United Kingdom
| | - Amin Doostmohammadi
- Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, 2100 Copenhagen, Denmark
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29
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Electric-Induced Reversal of Morphogenesis in Hydra. Biophys J 2019; 117:1514-1523. [PMID: 31570230 PMCID: PMC6817546 DOI: 10.1016/j.bpj.2019.09.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Accepted: 09/09/2019] [Indexed: 02/06/2023] Open
Abstract
Morphogenesis involves the dynamic interplay of biochemical, mechanical, and electrical processes. Here, we ask to what extent can the course of morphogenesis be modulated and controlled by an external electric field? We show that at a critical amplitude, an external electric field can halt morphogenesis in Hydra regeneration. Moreover, above this critical amplitude, the electric field can lead to reversal dynamics: a fully developed Hydra folds back into its incipient spheroid morphology. The potential to renew morphogenesis is reexposed when the field is reduced back to amplitudes below criticality. These dynamics are accompanied by modulations of the Wnt3 activity, a central component of the head organizer in Hydra. The controlled backward-forward cycle of morphogenesis can be repeated several times, showing that the reversal trajectory maintains the integrity of the tissue and its regeneration capability. Each cycle of morphogenesis leads to a newly emerged body plan in the redeveloped folded tissue, which is not necessarily similar to the one before the reversal process. Reversal of morphogenesis is shown to be triggered by enhanced electrical excitations in the Hydra tissue, leading to intensified calcium activity. Folding back of the body-plan morphology together with the decay of a central biosignaling system, indicate that electrical processes are tightly integrated with biochemical and mechanical-structural processes in morphogenesis and play an instructive role to a level that can direct developmental trajectories. Reversal of morphogenesis by external fields calls for extending its framework beyond program-like, forward-driven, hierarchical processes based on reaction diffusion and positional information.
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