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Kudo F, Kishikawa K, Tsuboi K, Kido T, Usui T, Hashimoto J, Shin-Ya K, Miyanaga A, Eguchi T. Acyltransferase Domain Exchange between Two Independent Type I Polyketide Synthases in the Same Producer Strain of Macrolide Antibiotics. Chembiochem 2023; 24:e202200670. [PMID: 36602093 DOI: 10.1002/cbic.202200670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 01/04/2023] [Accepted: 01/05/2023] [Indexed: 01/06/2023]
Abstract
Streptomyces graminofaciens A-8890 produces two macrolide antibiotics, FD-891 and virustomycin A, both of which show significant biological activity. In this study, we identified the virustomycin A biosynthetic gene cluster, which encodes type I polyketide synthases (PKSs), ethylmalonyl-CoA biosynthetic enzymes, methoxymalony-acyl carrier protein biosynthetic enzymes, and post-PKS modification enzymes. Next, we demonstrated that the acyltransferase domain can be exchanged between the Vsm PKSs and the PKSs involved in FD-891 biosynthesis (Gfs PKSs), without any supply problems of the unique extender units. We exchanged the malonyltransferase domain in the loading module of Gfs PKS with the ethylmalonyltransferase domain and the methoxymalonyltransferase domain of Vsm PKSs. Consequently, the expected two-carbon-elongated analog 26-ethyl-FD-891 was successfully produced with a titer comparable to FD-891 production by the wild type; however, exchange with the methoxymalonyltransferase domain did not produce any FD-891 analogs. Furthermore, 26-ethyl-FD-891 showed potent cytotoxic activity against HeLa cells, like natural FD-891.
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Affiliation(s)
- Fumitaka Kudo
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
| | - Kosuke Kishikawa
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
| | - Kazuma Tsuboi
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
| | - Takafusa Kido
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
| | - Takeo Usui
- Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8572, Ibaraki, Japan
| | - Junko Hashimoto
- Japan Biological Informatics Consortium (JBIC), 2-4-7 Aomi, Koto-ku, Tokyo, 135-0064, Japan
| | - Kazuo Shin-Ya
- National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo, 135-0064, Japan
| | - Akimasa Miyanaga
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
| | - Tadashi Eguchi
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 Meguro-ku, O-okayama, Tokyo, 152-8551, Japan
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2
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Kim SW, Lee W, Krische MJ. Asymmetric Allylation of Glycidols Mediated by Allyl Acetate via Iridium-Catalyzed Hydrogen Transfer. Org Lett 2017; 19:1252-1254. [PMID: 28221810 PMCID: PMC5651674 DOI: 10.1021/acs.orglett.7b00343] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Glycidols prepared via Sharpless asymmetric epoxidation participate in asymmetric redox-neutral carbonyl allylation with good levels of catalyst-directed diastereoselectivity. Equally stereoselective allylations may be performed from the aldehyde oxidation level using 2-propanol as the terminal reductant. An epoxide ring-opening reaction using AlMe3-n-BuLi is used to prepare the propionate-based stereotetrad spanning C17-C23 of dictyostatin, illustrating how this method may be applied to polyketide construction.
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Affiliation(s)
- Seung Wook Kim
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712
| | - Wonchul Lee
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712
| | - Michael J. Krische
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712
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3
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Itagaki T, Kawamata A, Takeuchi M, Hamada K, Iwabuchi Y, Eguchi T, Kudo F, Usui T, Kanoh N. Synthesis and structure–activity relationship study of FD-891: importance of the side chain and C8–C9 epoxide for cytotoxic activity against cancer cells. J Antibiot (Tokyo) 2016; 69:287-93. [DOI: 10.1038/ja.2015.148] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 12/22/2015] [Accepted: 12/24/2015] [Indexed: 11/09/2022]
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4
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Kanoh N, Kawamata A, Itagaki T, Miyazaki Y, Yahata K, Kwon E, Iwabuchi Y. A Concise and Unified Strategy for Synthesis of the C1–C18 Macrolactone Fragments of FD-891, FD-892 and Their Analogues: Formal Total Synthesis of FD-891. Org Lett 2014; 16:5216-9. [DOI: 10.1021/ol502633j] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Naoki Kanoh
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Ayano Kawamata
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Tomohiro Itagaki
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Yuta Miyazaki
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Kenzo Yahata
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Eunsang Kwon
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Yoshiharu Iwabuchi
- Graduate School of Pharmaceutical Sciences and ‡Research and Analytical Center
for Giant Molecules, Graduate School of Science, Tohoku University, 6-3
Aza-Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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5
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Abstract
Benzoquinone ansamycin antibiotic herbimycin A was synthesized in 19 linear steps and 4.2% yield. Highlighted is the design of a chiral γ-lactone as the C11-C15 synthon that enabled a facile catalytic asymmetric synthesis of the challenging C8-C20 fragment of the target molecule. The easy access to the stereogenic centers and high overall yield made the strategy applicable in the molecular editing of benzoquinone ansamycins.
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Affiliation(s)
- Rui Yan
- State Key Laboratory of Bioactive Substance and Function of Natural Medicine, Institute of Materia Medica, Peking Union Medical College & Chinese Academy of Medical Sciences , No. 1 Xiannongtan Street, Beijing 100050, China
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6
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Chatterjee B, Bera S, Mondal D. Julia–Kocienski olefination: a key reaction for the synthesis of macrolides. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.tetasy.2013.09.027] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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7
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Yu X, Sun D. Macrocyclic drugs and synthetic methodologies toward macrocycles. Molecules 2013; 18:6230-68. [PMID: 23708234 PMCID: PMC4374646 DOI: 10.3390/molecules18066230] [Citation(s) in RCA: 152] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Revised: 05/15/2013] [Accepted: 05/20/2013] [Indexed: 01/02/2023] Open
Abstract
Macrocyclic scaffolds are commonly found in bioactive natural products and pharmaceutical molecules. So far, a large number of macrocyclic natural products have been isolated and synthesized. The construction of macrocycles is generally considered as a crucial and challenging step in the synthesis of macrocyclic natural products. Over the last several decades, numerous efforts have been undertaken toward the synthesis of complex naturally occurring macrocycles and great progresses have been made to advance the field of total synthesis. The commonly used synthetic methodologies toward macrocyclization include macrolactonization, macrolactamization, transition metal-catalyzed cross coupling, ring-closing metathesis, and click reaction, among others. Selected recent examples of macrocyclic synthesis of natural products and druglike macrocycles with significant biological relevance are highlighted in each class. The primary goal of this review is to summarize currently used macrocyclic drugs, highlight the therapeutic potential of this underexplored drug class and outline the general synthetic methodologies for the synthesis of macrocycles.
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Affiliation(s)
| | - Dianqing Sun
- Department of Pharmaceutical Sciences, The Daniel K. Inouye College of Pharmacy, University of Hawai’i at Hilo, 34 Rainbow Drive, Hilo, HI 96720, USA; E-Mail:
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Parenty A, Moreau X, Niel G, Campagne JM. Update 1 of: Macrolactonizations in the Total Synthesis of Natural Products. Chem Rev 2013; 113:PR1-40. [DOI: 10.1021/cr300129n] [Citation(s) in RCA: 148] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- A. Parenty
- Institut de Chimie des Substances
Naturelles, Avenue de la Terrasse, F-91198 Gif sur Yvette, France
| | - X. Moreau
- Institut de Chimie des Substances
Naturelles, Avenue de la Terrasse, F-91198 Gif sur Yvette, France
- Institut Lavoisier de Versailles, UMR CNRS 8180, Université de Versailles-Saint-Quentin-en-Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles Cedex, France
| | - Gilles Niel
- Institut Charles Gerhardt, UMR5253, Ecole Nationale Supérieure de Chimie, 8 rue de l’Ecole Normale, F-34296 Montpellier, France
| | - J.-M. Campagne
- Institut de Chimie des Substances
Naturelles, Avenue de la Terrasse, F-91198 Gif sur Yvette, France
- Institut Charles Gerhardt, UMR5253, Ecole Nationale Supérieure de Chimie, 8 rue de l’Ecole Normale, F-34296 Montpellier, France
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Yadav JS, Nayak S, Sabitha G. Stereoselective synthesis of the C15–C30 subunit of dolabelides A–D. RSC Adv 2013. [DOI: 10.1039/c3ra44232b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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10
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Sabitha G, Rao AS, Yadav JS. Synthesis of the C1–C25 southern domain of spirastrellolides B and F. Org Biomol Chem 2013; 11:7218-31. [DOI: 10.1039/c3ob41345d] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Affiliation(s)
- J. S. Yadav
- Natural Products Chemistry Division I, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007,
India
| | - Sukant Kishore Das
- Natural Products Chemistry Division I, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007,
India
| | - G. Sabitha
- Natural Products Chemistry Division I, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007,
India
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12
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Sequencing cross-metathesis and non-metathesis reactions to rapidly access building blocks for synthesis. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.01.080] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Kudo F, Motegi A, Mizoue K, Eguchi T. Cloning and characterization of the biosynthetic gene cluster of 16-membered macrolide antibiotic FD-891: involvement of a dual functional cytochrome P450 monooxygenase catalyzing epoxidation and hydroxylation. Chembiochem 2010; 11:1574-82. [PMID: 20589823 DOI: 10.1002/cbic.201000214] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
FD-891 is a 16-membered cytotoxic antibiotic macrolide that is especially active against human leukemia such as HL-60 and Jurkat cells. We identified the FD-891 biosynthetic (gfs) gene cluster from the producer Streptomyces graminofaciens A-8890 by using typical modular type I polyketide synthase (PKS) genes as probes. The gfs gene cluster contained five typical modular type I PKS genes (gfsA, B, C, D, and E), a cytochrome P450 gene (gfsF), a methyltransferase gene (gfsG), and a regulator gene (gfsR). The gene organization of PKSs agreed well with the basic polyketide skeleton of FD-891 including the oxidation states and alpha-alkyl substituent determined by the substrate specificities of the acyltransferase (AT) domains. To clarify the involvement of the gfs genes in the FD-891 biosynthesis, the P450 gfsF gene was inactivated; this resulted in the loss of FD-891 production. Instead, the gfsF gene-disrupted mutant accumulated a novel FD-891 analogue 25-O-methyl-FD-892, which lacked the epoxide and the hydroxyl group of FD-891. Furthermore, the recombinant GfsF enzyme coexpressed with putidaredoxin and putidaredoxin reductase converted 25-O-methyl-FD-892 into FD-891. In the course of the GfsF reaction, 10-deoxy-FD-891 was isolated as an enzymatic reaction intermediate, which was also converted into FD-891 by GfsF. Therefore, it was clearly found that the cytochrome P450 GfsF catalyzes epoxidation and hydroxylation in a stepwise manner in the FD-891 biosynthesis. These results clearly confirmed that the identified gfs genes are responsible for the biosynthesis of FD-891 in S. graminofaciens.
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Affiliation(s)
- Fumitaka Kudo
- Department of Chemistry, Tokyo Institute of Technology, 2-12-1 O-okayama, Meguro-ku, Tokyo 152-8551, Japan
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14
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The cytotoxic macrolide FD-891 induces caspase-8-dependent mitochondrial release of cytochrome c and subsequent apoptosis in human leukemia Jurkat cells. J Antibiot (Tokyo) 2009; 62:507-12. [DOI: 10.1038/ja.2009.62] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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