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Santi N, Piccirilli A, Corsini F, Taracila MA, Perilli M, Bonomo RA, Fini F, Prati F, Caselli E. Discovery of Boronic Acids-Based β-Lactamase Inhibitors Through In Situ Click Chemistry. Int J Mol Sci 2025; 26:4182. [PMID: 40362418 PMCID: PMC12071365 DOI: 10.3390/ijms26094182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 04/21/2025] [Accepted: 04/26/2025] [Indexed: 05/15/2025] Open
Abstract
In this study, we evaluated in situ click chemistry as a platform for discovering boronic acid-based β-lactamase inhibitors (BLIs). Unlike conventional drug discovery approaches requiring multi-step synthesis, protection strategies, and extensive screening, the in situ method can allow for the generation and identification of potent β-lactamase inhibitors in a rapid, economic, and efficient way. Using KPC-2 (class A carbapenemase) and AmpC (class C cephalosporinase) as templates, we demonstrated their ability to catalyse azide-alkyne cycloaddition, facilitating the formation of triazole-based β-lactamase inhibitors. Initial screening of various β-lactamases and boronic warheads identified compound 3 (3-azidomethylphenyl boronic acid) as the most effective scaffold for kinetic target-guided synthesis (KTGS). KTGS experiments with AmpC and KPC-2 yielded triazole inhibitors with Ki values as low as 140 nM (compound 10a, AmpC) and 730 nM (compound 5, KPC-2). Competitive inhibition studies confirmed triazole formation within the active site, while an LC-MS analysis verified that the reversible covalent interaction of boronic acids did not affect detection of the in situ-synthesised product. While KTGS successfully identified potent inhibitors, limitations in amplification coefficients and spatial constraints highlight the need for optimised warhead designs. This study validates KTGS as a promising strategy for BLI discovery and provides insights for further refinement in fighting β-lactamase-mediated antibiotic resistance.
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Affiliation(s)
- Nicolò Santi
- Department of Life Sciences, Università degli Studi di Modena e Reggio Emilia (UNIMORE), via Campi 103, 41125 Modena, Italy; (N.S.); (F.C.); (F.F.); (F.P.)
| | - Alessandra Piccirilli
- Department of Biotechnological and Applied Clinical Sciences, Università degli Studi dell’Aquila, via Vetoio, 67100 L’Aquila, Italy; (A.P.); (M.P.)
| | - Federico Corsini
- Department of Life Sciences, Università degli Studi di Modena e Reggio Emilia (UNIMORE), via Campi 103, 41125 Modena, Italy; (N.S.); (F.C.); (F.F.); (F.P.)
| | - Magdalena A. Taracila
- Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; (M.A.T.); (R.A.B.)
- Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH 44106, USA
| | - Mariagrazia Perilli
- Department of Biotechnological and Applied Clinical Sciences, Università degli Studi dell’Aquila, via Vetoio, 67100 L’Aquila, Italy; (A.P.); (M.P.)
| | - Robert A. Bonomo
- Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; (M.A.T.); (R.A.B.)
- Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH 44106, USA
- Clinician Scientist Investigator, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH 44106, USA
- Departments of Medicine, Pharmacology, Molecular Biology and Microbiology, Biochemistry, and Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA
- Cleveland Veteran Affair Medical Center for Antimicrobial Resistance and Epidemiology (Case VA CARES), Case Western Reserve University, Cleveland, OH 44106, USA
| | - Francesco Fini
- Department of Life Sciences, Università degli Studi di Modena e Reggio Emilia (UNIMORE), via Campi 103, 41125 Modena, Italy; (N.S.); (F.C.); (F.F.); (F.P.)
| | - Fabio Prati
- Department of Life Sciences, Università degli Studi di Modena e Reggio Emilia (UNIMORE), via Campi 103, 41125 Modena, Italy; (N.S.); (F.C.); (F.F.); (F.P.)
| | - Emilia Caselli
- Department of Life Sciences, Università degli Studi di Modena e Reggio Emilia (UNIMORE), via Campi 103, 41125 Modena, Italy; (N.S.); (F.C.); (F.F.); (F.P.)
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Introvigne ML, Destro L, Mologni L, Crippa V, Zardi P, Fini F, Prati F, Caselli E, Zambon A. α-Triazolylboronic Acids: A Novel Scaffold to Target FLT3 in AML. ChemMedChem 2025; 20:e202400622. [PMID: 39331039 PMCID: PMC11694611 DOI: 10.1002/cmdc.202400622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Revised: 09/23/2024] [Accepted: 09/24/2024] [Indexed: 09/28/2024]
Abstract
The treatment of acute myeloid leukemia (AML) presents a challenge to current therapies because of the development of drug resistance. Genetic mutation of FMS-like tyrosine kinase-3 (FLT3) is a target of interest for AML treatment, but the use of FLT3-targeting agents on AML patients has so far resulted in poor overall clinical outcomes.[1] The incorporation of the boronic group in a drug scaffold could enhance the bioavailability and pharmacokinetic profile of conventional anticancer chemotypes. Boronic acids represent an intriguing and unexplored class of compounds in the context of AML, and they are only scantly reported as inhibitors of protein kinases. We identified α-triazolylboronic acids as a novel chemotype for targeting FLT3 by screening a library of structurally heterogeneous in-house boronic acids. Selected compounds show low micromolar activities on enzymatic and cellular assays, selectivity against control cell lines and a recurring binding mode in in-silico studies. Furthermore, control analogues synthesized ad hoc and lacking the boronic acid are inactive, confirming that this group is essential for the activity of the series. All together, these results suggest α-triazolylboronic acids could be a promising novel chemotype for FLT3 inhibition, laying the ground for the design of further compounds.
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Affiliation(s)
| | - Lorenza Destro
- Department of Chemical and Geological SciencesUniversity of Modena and Reggio EmiliaModenaItaly
| | - Luca Mologni
- Department of Medicine and SurgeryUniversity of Milano-BicoccaMonzaItaly
| | - Valentina Crippa
- Department of Medicine and SurgeryUniversity of Milano-BicoccaMonzaItaly
| | - Paolo Zardi
- Department of Chemical and Geological SciencesUniversity of Modena and Reggio EmiliaModenaItaly
| | - Francesco Fini
- Department of Life SciencesUniversity of Modena and Reggio EmiliaModenaItaly
| | - Fabio Prati
- Department of Life SciencesUniversity of Modena and Reggio EmiliaModenaItaly
| | - Emilia Caselli
- Department of Life SciencesUniversity of Modena and Reggio EmiliaModenaItaly
| | - Alfonso Zambon
- Department of Chemical and Geological SciencesUniversity of Modena and Reggio EmiliaModenaItaly
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Roman G. Thiophene-containing compounds with antimicrobial activity. Arch Pharm (Weinheim) 2022; 355:e2100462. [PMID: 35289443 DOI: 10.1002/ardp.202100462] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 02/08/2022] [Accepted: 02/10/2022] [Indexed: 12/19/2022]
Abstract
Thiophene, as a member of the group of five-membered heterocycles containing one heteroatom, is one of the simplest heterocyclic systems. Many synthetic strategies allow the accurate positioning of various functionalities onto the thiophene ring. This review provides a comprehensive, systematic and detailed account of the developments in the field of antimicrobial compounds featuring at least one thiophene ring in their structure, over the last decade.
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Affiliation(s)
- Gheorghe Roman
- Department of Inorganic Polymers, Petru Poni Institute of Macromolecular Chemistry, Iaşi, Romania
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