Synthesis and Fluorescence Study of a Quaternized Copolymer Containing Pyrene for DNA-Hybridization Detection

AIE active polymers for biological applications

The discovery of aggregation-induced emission (AIE) phenomenon, significantly altered the understanding of the scientific world about the luminophore aggregation. Polymers with AIE features have recently emerged as promising materials with wide range of applications in optoelectronics devices, chemosensors, bioimaging, cancer theranostics and drug delivery. By introducing the AIE active molecule into the polymer structure, novel materials encompassing the characteristics properties of both the functional materials such as excellent brightness, versatile structure modification, high biocompatibility, exceptional stability and facile processability are achieved. This chapter presents the advances in synthetic design as well as potential biological applications of AIE active polymers, beginning with a brief introduction to the AIE phenomenon. The versatile synthetic route, easier functionalization, and light up feature of the AIE active polymers offer direct visualization of the physiological processes within or outside the living organisms. This chapter also precisely describes the photodynamic therapy/photothermal therapy (PDT/PTT) with up-to-date advancement of AIE active polymer and their emerging applications in biomedical field. The AIE active Photosensitizers (PSs) are much more efficient in singlet oxygen (¹O₂) production than their small molecule AIE active PSs due to their enhanced inter system crossing (ISC) process and improved light-harvesting ability. Additionally, the present chapter aims to focus on all recent AIE active polymers for drug screening and drug delivery. The AIE active polymer often shows decent drug loading capacity, high stability and good biocompatibility comprising image guided drug monitoring features. Lastly, the concluding discussion reveals the future prospective of the AIE active polymers.

The interaction of light-activatable 2-thioxanthone thioacetic acid with ct-DNA and its cytotoxic activity: Novel theranostic agent

In this study, a thioxanthone derivative, 2-Thioxanthone Thioacetic Acid (TXSCH₂COOH) was used to analyze the type of binding to calf thymus DNA in a physiological buffer (Tris-HCl buffer solution, pH:7.0). Several spectroscopic techniques were employed including UV-Vis absorption and fluorescence emission spectroscopy and viscosity measurements were also used to clarify the binding mode of TXSCH₂COOH to ct-DNA. The intrinsic binding constant Kb of TXSCH₂COOH-ct-DNA was found as 2.5 × 10³ M^-1 from the absorption studies. Increasing of fluorescence emission intensity was found approximately 74.4% by adding ct-DNA to the TXSCH₂COOH solution. Fluorescence microscopy was employed to display imaging of the TXSCH₂COOH-ct-DNA solution. Increasing of the iodide quenching effect was observed when TXSCH₂COOH was added to the double stranded DNA and the calculated quenching constants of TXSCH₂COOH and TXSCH₂COOH-ct-DNA were found to be 1.89 × 10³ M^-1 and 1.19 × 10⁴ M^-1, respectively. Additionally, the iodide quenching experiment was conducted with single stranded DNA which led to a high Ksv value. All the experimental results including the viscosity values of ct-DNA with TXSCH₂COOH demonstrated that the binding of TXSCH₂COOH to ct-DNA was most likely groove binding. Furthermore, TXSCH₂COOH was found to be an A-T rich minor groove binder. This was confirmed by the displacement assays with Hoechst 33258 compared to Ethidium Bromide. The in vitro cytotoxic activity measurements were performed by MTT assay on HT29 cell line for 72 h. TXSCH₂COOH exhibited notable cytotoxic activities compared to the standard chemotherapy drugs, fluorouracil (5-FU), cisplatin in tumorigenic HT29 cell line. The 50% growth-inhibitory concentration (IC₅₀) for TXSCH₂COOH was 19,8 μg/mL while 5-FU and cisplatin were 28.9 μg/mL, 20 μg/mL, respectively. The increase in cytotoxic effect when TXSCH₂COOH is activated by light indicates the potential of being theranostic cancer drug candidate.

pH-Responsive and pyrene based electrospun nanofibers for DNA adsorption and detection

A labeling-free DNA adsorption and detection method based on pH-responsive volume changes poly(DMAEMA-co-SA-co-Py) nanofibers shows its potential applications in DNA adsorption and separation.

Self-assembly and hybridization mechanisms of DNA with cationic polythiophene

The combination of DNA and π-conjugated polyelectrolytes (CPEs) represents a promising approach to develop DNA hybridization biosensors, with potential applications for instance in the detection of DNA lesions and single-nucleotide polymorphisms. Here we exploit the remarkable optical properties of a cationic poly[3-(6'-(trimethylphosphonium)hexyl)thiophene-2,5-diyl] (CPT) to decipher the self-assembly of DNA and CPT. The ssDNA/CPT complexes have chiroptical signatures in the CPT absorption region that are strongly dependent on the DNA sequence, which we relate to differences in supramolecular interactions between the thiophene monomers and the various nucleobases. By studying DNA-DNA hybridization and melting processes on preformed ssDNA/CPT complexes, we observe sequence-dependent mechanisms that can yield DNA-condensed aggregates. Heating-cooling cycles show that non-equilibrium mixtures can form, noticeably depending on the working sequence of the hybridization experiment. These results are of high importance for the use of π-conjugated polyelectrolytes in DNA hybridization biosensors and in polyplexes.

Labeling-free fluorescent detection of DNA hybridization through FRET from pyrene excimer to DNA intercalator SYBR green I

A novel labeling-free fluorescence complex probe has been developed for DNA hybridization detection based on fluorescence resonance energy transfer (FRET) mechanism from pyrene excimer of pyrene-functionalized poly [2-(N, N-dimethylamino) ethyl methacrylate] (PFP) to SYBR Green I (SG, a specific intercalator of double-stranded DNA) in a cost-effective, rapid and simple manner. The complex probe consists of the positively charged PFP, SG and negatively charged single-stranded DNA (ssDNA). Upon adding a complementary strand to the complex probe solution, double-stranded DNA (dsDNA) was formed, followed by the intercalation of SG into dsDNA. The pyrene excimer emission was overlapped with the absorption of SG very well and the electrostatic interactions between PFP and dsDNA kept them in close proximity, enabling efficient FRET from pyrene excimer to SG. The fluorescence of SG in the duplex DNA resulting from FRET can be successfully applied to detect DNA hybridization with high sensitivity for a very low detection limit of 10nM and excellent selectivity for detection of single base pair mismatch.

Fluorescence detection of DNA hybridization based on the aggregation-induced emission of a perylene-functionalized polymer

A perylene-functionalized polycation was synthesized by quaternization of poly(4-vinylpyridine) with bromomethyl-perylene and methyl iodide, which exhibited a unique aggregation-induced emission (AIE) effect. The synthesized polycation and polyanion ssDNA could form a complex probe to detect DNA hybridization. Upon adding noncomplementary ssDNA, the fluorescence of the complex probe increased due to the AIE effect; upon adding complementary ssDNA, the fluorescence intensity changed little due to the combined effects of AIE and duplex-quenching resulting from the intercalation of perylene into the duplex.