1
|
Estaque T, Basthard-Bogain S, Bianchimani O, Blondeaux V, Cheminée A, Fargetton M, Richaume J, Bally M. Investigating the outcomes of a threatened gorgonian in situ transplantation: Survival and microbiome diversity in Paramuricea clavata (Risso, 1827). MARINE ENVIRONMENTAL RESEARCH 2024; 196:106384. [PMID: 38320428 DOI: 10.1016/j.marenvres.2024.106384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 01/29/2024] [Accepted: 01/30/2024] [Indexed: 02/08/2024]
Abstract
Gorgonian octocorals are threatened by global and local stressors that can act synergistically to affect their health. In recent years, mass mortality events triggered by marine heatwaves have caused demographic declines in Mediterranean gorgonian populations that may lead to their collapse. Potential changes in microbiome composition under stressful conditions may further increase the susceptibility of the gorgonian holobiont to disease. Given the low recovery capacity of gorgonians, restoration approaches using transplantation are becoming an increasingly attractive option to counteract their decline. Here, we compared the survival and microbiome diversity of Paramuricea clavata colonies transplanted to sites differing in depth and local environmental conditions. Gorgonians sampled at a greater depth than the transplantation site were more likely to suffer necrosis after 1 year of monitoring. Gorgonian transplantation into environments disturbed by an anthropogenic source of pollution resulted in an imbalance of the microbiome with potential consequences on the success of restoration initiatives.
Collapse
Affiliation(s)
- Tristan Estaque
- Septentrion Environnement, Campus Nature Provence, Marseille, France.
| | | | | | - Vincent Blondeaux
- Septentrion Environnement, Campus Nature Provence, Marseille, France
| | - Adrien Cheminée
- Septentrion Environnement, Campus Nature Provence, Marseille, France
| | - Margaux Fargetton
- Septentrion Environnement, Campus Nature Provence, Marseille, France
| | - Justine Richaume
- Septentrion Environnement, Campus Nature Provence, Marseille, France
| | - Marc Bally
- Mediterranean Institute of Oceanography, Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France
| |
Collapse
|
2
|
Hung TH, So T, Thammavong B, Chamchumroon V, Theilade I, Phourin C, Bouamanivong S, Hartvig I, Gaisberger H, Jalonen R, Boshier DH, MacKay JJ. Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods. Proc Natl Acad Sci U S A 2023; 120:e2301603120. [PMID: 37549265 PMCID: PMC10438386 DOI: 10.1073/pnas.2301603120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Accepted: 06/15/2023] [Indexed: 08/09/2023] Open
Abstract
In the billion-dollar global illegal wildlife trade, rosewoods have been the world's most trafficked wild product since 2005. Dalbergia cochinchinensis and Dalbergia oliveri are the most sought-after rosewoods in the Greater Mekong Subregion. They are exposed to significant genetic risks and the lack of knowledge on their adaptability limits the effectiveness of conservation efforts. Here, we present genome assemblies and range-wide genomic scans of adaptive variation, together with predictions of genomic offset to climate change. Adaptive genomic variation was differentially associated with temperature and precipitation-related variables between the species, although their natural ranges overlap. The findings are consistent with differences in pioneering ability and in drought tolerance. We predict their genomic offsets will increase over time and with increasing carbon emission pathway but at a faster pace in D. cochinchinensis than in D. oliveri. These results and the distinct gene-environment association in the eastern coastal edge of Vietnam suggest species-specific conservation actions: germplasm representation across the range in D. cochinchinensis and focused on hotspots of genomic offset in D. oliveri. We translated our genomic models into a seed source matching application, seedeR, to rapidly inform restoration efforts. Our ecological genomic research uncovering contrasting selection forces acting in sympatric rosewoods is of relevance to conserving tropical trees globally and combating risks from climate change.
Collapse
Affiliation(s)
- Tin Hang Hung
- Department of Biology, University of Oxford, OxfordOX1 3RB, United Kingdom
| | - Thea So
- Institute of Forest and Wildlife Research and Development, Phnom Penh, Cambodia
| | - Bansa Thammavong
- National Agriculture and Forestry Research Institute, Forestry Research Center, Vientiane, Laos
| | - Voradol Chamchumroon
- The Forest Herbarium, Department of National Park, Wildlife and Plant Conservation, Ministry of Natural Resources and Environment, Bangkok10900, Thailand
| | - Ida Theilade
- Department of Food and Resource Economics, Faculty of Science, University of Copenhagen, Rolighedsvej 23, 1958Frederiksberg C, Denmark
| | - Chhang Phourin
- Institute of Forest and Wildlife Research and Development, Phnom Penh, Cambodia
| | - Somsanith Bouamanivong
- National Herbarium of Laos, Biotechnology and Ecology Institute, Ministry of Science and Technology, Vientiane, Laos
| | - Ida Hartvig
- Forest Genetics and Diversity, Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958Frederiksberg C, Denmark
- Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Øster Farimagsgade 5, 1353 Copenhagen K, Denmark
| | - Hannes Gaisberger
- Bioversity International, I-00057Rome, Italy
- Department of Geoinformatics, Paris Lodron University, 5020Salzburg, Austria
| | | | - David H. Boshier
- Department of Biology, University of Oxford, OxfordOX1 3RB, United Kingdom
| | - John J. MacKay
- Department of Biology, University of Oxford, OxfordOX1 3RB, United Kingdom
| |
Collapse
|
3
|
Exploring the response of a key Mediterranean gorgonian to heat stress across biological and spatial scales. Sci Rep 2022; 12:21064. [PMID: 36473926 PMCID: PMC9726941 DOI: 10.1038/s41598-022-25565-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 12/01/2022] [Indexed: 12/12/2022] Open
Abstract
Understanding the factors and processes that shape intra-specific sensitivity to heat stress is fundamental to better predicting the vulnerability of benthic species to climate change. Here, we investigate the response of a habitat-forming Mediterranean octocoral, the red gorgonian Paramuricea clavata (Risso, 1826) to thermal stress at multiple biological and geographical scales. Samples from eleven P. clavata populations inhabiting four localities separated by hundreds to more than 1500 km of coast and with contrasting thermal histories were exposed to a critical temperature threshold (25 °C) in a common garden experiment in aquaria. Ten of the 11 populations lacked thermotolerance to the experimental conditions provided (25 days at 25 °C), with 100% or almost 100% colony mortality by the end of the experiment. Furthermore, we found no significant association between local average thermal regimes nor recent thermal history (i.e., local water temperatures in the 3 months prior to the experiment) and population thermotolerance. Overall, our results suggest that local adaptation and/or acclimation to warmer conditions have a limited role in the response of P. clavata to thermal stress. The study also confirms the sensitivity of this species to warm temperatures across its distributional range and questions its adaptive capacity under ocean warming conditions. However, important inter-individual variation in thermotolerance was found within populations, particularly those exposed to the most severe prior marine heatwaves. These observations suggest that P. clavata could harbor adaptive potential to future warming acting on standing genetic variation (i.e., divergent selection) and/or environmentally-induced phenotypic variation (i.e., intra- and/or intergenerational plasticity).
Collapse
|
4
|
Garrabou J, Gómez‐Gras D, Medrano A, Cerrano C, Ponti M, Schlegel R, Bensoussan N, Turicchia E, Sini M, Gerovasileiou V, Teixido N, Mirasole A, Tamburello L, Cebrian E, Rilov G, Ledoux J, Souissi JB, Khamassi F, Ghanem R, Benabdi M, Grimes S, Ocaña O, Bazairi H, Hereu B, Linares C, Kersting DK, la Rovira G, Ortega J, Casals D, Pagès‐Escolà M, Margarit N, Capdevila P, Verdura J, Ramos A, Izquierdo A, Barbera C, Rubio‐Portillo E, Anton I, López‐Sendino P, Díaz D, Vázquez‐Luis M, Duarte C, Marbà N, Aspillaga E, Espinosa F, Grech D, Guala I, Azzurro E, Farina S, Cristina Gambi M, Chimienti G, Montefalcone M, Azzola A, Mantas TP, Fraschetti S, Ceccherelli G, Kipson S, Bakran‐Petricioli T, Petricioli D, Jimenez C, Katsanevakis S, Kizilkaya IT, Kizilkaya Z, Sartoretto S, Elodie R, Ruitton S, Comeau S, Gattuso J, Harmelin J. Marine heatwaves drive recurrent mass mortalities in the Mediterranean Sea. GLOBAL CHANGE BIOLOGY 2022; 28:5708-5725. [PMID: 35848527 PMCID: PMC9543131 DOI: 10.1111/gcb.16301] [Citation(s) in RCA: 61] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 05/10/2022] [Accepted: 05/15/2022] [Indexed: 05/12/2023]
Abstract
Climate change is causing an increase in the frequency and intensity of marine heatwaves (MHWs) and mass mortality events (MMEs) of marine organisms are one of their main ecological impacts. Here, we show that during the 2015-2019 period, the Mediterranean Sea has experienced exceptional thermal conditions resulting in the onset of five consecutive years of widespread MMEs across the basin. These MMEs affected thousands of kilometers of coastline from the surface to 45 m, across a range of marine habitats and taxa (50 taxa across 8 phyla). Significant relationships were found between the incidence of MMEs and the heat exposure associated with MHWs observed both at the surface and across depths. Our findings reveal that the Mediterranean Sea is experiencing an acceleration of the ecological impacts of MHWs which poses an unprecedented threat to its ecosystems' health and functioning. Overall, we show that increasing the resolution of empirical observation is critical to enhancing our ability to more effectively understand and manage the consequences of climate change.
Collapse
Affiliation(s)
- Joaquim Garrabou
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Daniel Gómez‐Gras
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Alba Medrano
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Carlo Cerrano
- Dept of Life and Environmental SciencesPolytechnic University of MarcheAnconaItaly
- Fano Marine CentreFanoItaly
| | - Massimo Ponti
- Department of Biological, Geological and Environmental SciencesUniversity of BolognaRavennaItaly
- CoNISMaRomeItaly
| | - Robert Schlegel
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
| | - Nathaniel Bensoussan
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Eva Turicchia
- Department of Biological, Geological and Environmental SciencesUniversity of BolognaRavennaItaly
- CoNISMaRomeItaly
| | - Maria Sini
- Department of Marine SciencesUniversity of the AegeanMytileneGreece
| | - Vasilis Gerovasileiou
- Department of Environment, Faculty of EnvironmentIonian UniversityZakynthosGreece
- Hellenic Centre for Marine Research (HCMR)Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC)HeraklionGreece
| | - Nuria Teixido
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Alice Mirasole
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Laura Tamburello
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Emma Cebrian
- Centre d'Estudis Avançats de Blanes (CEAB‐CSIC)GironaSpain
| | - Gil Rilov
- National Institute of OceanographyIsrael Oceanographic and Limnological Research (IOLR)HaifaIsrael
| | - Jean‐Baptiste Ledoux
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- CIIMAR‐Interdisciplinary Centre of Marine and Environmental ResearchUniversity of PortoMatosinhosPortugal
| | - Jamila Ben Souissi
- National Agronomic Institute of TunisiaTunis University of CarthageTunisTunisia
- Biodiversity, Biotechnology and Climate Change Laboratory‐LR11ES09University of Tunis El ManarTunisTunisia
| | - Faten Khamassi
- National Agronomic Institute of TunisiaTunis University of CarthageTunisTunisia
| | - Raouia Ghanem
- Biodiversity, Biotechnology and Climate Change Laboratory‐LR11ES09University of Tunis El ManarTunisTunisia
| | | | - Samir Grimes
- Ecole Nationale Supérieure des Sciences de la Mer et de l'Aménagement (ENSSMAL)AlgerAlgeria
| | | | - Hocein Bazairi
- Laboratory 'Biodiversity, Ecology and Genome', Faculty of SciencesMohamed V University in RabatRabatMorocco
| | - Bernat Hereu
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Cristina Linares
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Diego Kurt Kersting
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Graciel la Rovira
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Júlia Ortega
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - David Casals
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Marta Pagès‐Escolà
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Núria Margarit
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Pol Capdevila
- School of Biological SciencesUniversity of BristolBristolUK
| | | | - Alfonso Ramos
- Departamento de Ciencias del Mar y Biología AplicadaUniversidad de AlicanteAlicanteSpain
| | | | - Carmen Barbera
- Departamento de Ciencias del Mar y Biología AplicadaUniversidad de AlicanteAlicanteSpain
| | | | | | | | - David Díaz
- Centro Oceanográfico de Baleares (IEO‐CSIC)Palma de MallorcaSpain
| | | | - Carlos Duarte
- Red Sea Research CenterKing Abudllah University of Science and TechnologyThuwalSaudi Arabia
- Institut Mediterrani d'Estudis AvançatsMallorcaSpain
| | - Nuria Marbà
- Institut Mediterrani d'Estudis AvançatsMallorcaSpain
| | | | - Free Espinosa
- Laboratorio de Biología MarinaUniversidad de SevillaSevillaSpain
| | | | - Ivan Guala
- IMC—International Marine CentreOristanoItaly
| | - Ernesto Azzurro
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
- CNR‐IRBIM, NR‐IRBIM, National Research CouncilInstitute of Biological Resources and Marine BiotechnologiesAnconaItaly
| | - Simone Farina
- Stazione Zoologica Anton Dohrn, Deptartment of Integrative Marine EcologyGenoa Marine CentreGenoaItaly
| | | | - Giovanni Chimienti
- CoNISMaRomeItaly
- Department of BiologyUniversity of Bari Aldo MoroBariItaly
| | - Monica Montefalcone
- Department of Earth, Environment and Life SciencesUniversity of GenoaGenoaItaly
| | - Annalisa Azzola
- Department of Earth, Environment and Life SciencesUniversity of GenoaGenoaItaly
| | | | - Simonetta Fraschetti
- CoNISMaRomeItaly
- Department of BiologyUniversity of Naples Federico IINaplesItaly
| | | | - Silvija Kipson
- SEAFANZagrebCroatia
- Faculty of Science, Department of BiologyUniversity of ZagrebZagrebCroatia
| | | | - Donat Petricioli
- D.I.I.V. Ltd for Marine, Freshwater and Subterranean EcologySaliCroatia
| | - Carlos Jimenez
- Enalia Physis Environmental Research CentreNicosiaCyprus
- The Cyprus Institute Energy Environment and Water Research CenterAglantziaCyprus
| | | | | | | | | | | | - Sandrine Ruitton
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Steeve Comeau
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
| | - Jean‐Pierre Gattuso
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
- Institute for Sustainable Development and International Relations. Sciences PoParisFrance
| | | |
Collapse
|
5
|
Abstract
Corallium rubrum has been exploited by humankind for centuries. The long-term exploitation dynamics of this species make it even more important today to increase protection and restoration efforts as it provides a significant range of ecosystem services. This becomes even more important in areas where natural recovery is hindered or unlikely. So far, only very few experiments have been carried out in the past, investigating suitable techniques for the successful transplantation of this species. For this reason, a review was conducted in order to synthesize previous results and identify the most promising methodologies. Additionally, six different transplantation techniques were tested and discussed in the context of the review. Five techniques used fragments for transplantation, while one used newly settled larvae on PVC-tiles. Shallow C. rubrum colonies often grow upside down under crevices and rims as well as in caves, making the transplantation of fragments comparatively challenging. Here, C. rubrum was transplanted upside down under crevices using a PVC-grid in combination with epoxy putty to hold fragments in place, and the results indicated the potential benefits of this technique. In a novel approach, shallow colonies, and larvae on settling plates were also transferred to deeper areas, suggesting that mesophotic populations can be restored to reconstruct pre-exploitation conditions. Attaching the colonies to the roof of crevices provided a level of survivorship consistent with conventional erect transplantations of colonies on rock bottom but had the advantage of being more removed from sedimentation and anthropogenic disturbance. Future work must develop permanent grid-mounting methods for use in the crevices before this approach can be further explored for large-scale restoration efforts.
Collapse
|
6
|
The effect of thermal stress on the physiology and bacterial communities of two key Mediterranean gorgonians. Appl Environ Microbiol 2022; 88:e0234021. [PMID: 35108095 PMCID: PMC8939326 DOI: 10.1128/aem.02340-21] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Gorgonians are important habitat-providing species in the Mediterranean Sea, but their populations are declining due to microbial diseases and repeated mass mortality events caused by summer heat waves. Elevated seawater temperatures may impact the stress tolerance and disease resistance of gorgonians and lead to disturbances in their microbiota. However, our knowledge of the biological response of the gorgonian holobiont (i.e., the host and its microbiota) to thermal stress remains limited. Here, we investigated how the holobiont of two gorgonian species (Paramuricea clavata and Eunicella cavolini) are affected throughout a 7-week thermal stress event by following both the corals’ physiology and the composition of their bacterial communities. We found that P. clavata was more sensitive to elevated seawater temperatures than E. cavolini, showing a greater loss in energy reserves, reduced feeding ability, and partial mortality. This lower thermotolerance may be linked to the ∼20× lower antioxidant defense capacity in P. clavata compared with E. cavolini. In the first 4 weeks of thermal stress, we also observed minor shifts in the microbiota of both species, suggesting that the microbiota likely plays a limited role in thermal acclimation of the holobiont. However, major stochastic changes occurred later on in some colonies, which were of a transient nature in E. cavolini, but were linked to partial colony mortality in P. clavata. Overall, our results show significant, but differential, effects of thermal stress on the holobionts of both E. cavolini and P. clavata and predict potentially severe impacts on gorgonian populations under future climate scenarios. IMPORTANCE In the Mediterranean Sea, the tree-shaped gorgonian corals form large forests that provide a place to live for many species. Because of this important ecological role, it is crucial to understand how common habitat-forming gorgonians, like Eunicella cavolini and Paramuricea clavata, are affected by high seawater temperatures that are expected in the future due to climate change. We found that both species lost biomass, but P. clavata was more affected, being also unable to feed and showing signs of mortality. The microbiota of both gorgonians also changed substantively under high temperatures. Although this could be linked to partial colony mortality in P. clavata, the changes were temporary in E. cavolini. The overall higher resistance of E. cavolini may be related to its much higher antioxidant defense levels than P. clavata. Climate change may thus have severe impacts on gorgonian populations and the habitats they provide.
Collapse
|
7
|
Ledoux J, Ghanem R, Horaud M, López‐Sendino P, Romero‐Soriano V, Antunes A, Bensoussan N, Gómez‐Gras D, Linares C, Machordom A, Ocaña O, Templado J, Leblois R, Ben Souissi J, Garrabou J. Gradients of genetic diversity and differentiation across the distribution range of a Mediterranean coral: Patterns, processes and conservation implications. DIVERS DISTRIB 2021. [DOI: 10.1111/ddi.13382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Jean‐Baptiste Ledoux
- CIIMAR/CIMAR Centro Interdisciplinar de Investigação Marinha e Ambiental Universidade do Porto Porto Portugal
- Institut de Ciències del Mar CSIC Barcelona Spain
| | - Raouia Ghanem
- Institut National Agronomique de Tunisie Université de Carthage Tunis Tunisie
- Laboratoire de Biodiversité, Biotechnologies et Changements Climatiques (LR11ES09) Université Tunis El Manar Tunis Tunisie
| | | | | | | | - Agostinho Antunes
- CIIMAR/CIMAR Centro Interdisciplinar de Investigação Marinha e Ambiental Universidade do Porto Porto Portugal
- Departamento de Biologia Faculdade de Ciências Universidade do Porto Porto Portugal
| | | | | | - Cristina Linares
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Institut de Recerca de la Biodiversitat (IRBIO) Universitat de Barcelona Barcelona Spain
| | - Annie Machordom
- Museo Nacional de Ciencias Naturales (MNCN‐CSIC) Madrid Spain
| | - Oscar Ocaña
- Departamento de Oceanografía Biológica y Biodiversidad Fundación Museo del Mar de Ceuta Ceuta Spain
| | - José Templado
- Museo Nacional de Ciencias Naturales (MNCN‐CSIC) Madrid Spain
| | - Raphaêl Leblois
- CBGP INRAE CIRAD IRD Montpellier SupAgro University of Montpellier Montpellier France
- Institut de Biologie Computationnelle University of Montpellier Montpellier France
| | - Jamila Ben Souissi
- Institut National Agronomique de Tunisie Université de Carthage Tunis Tunisie
- Laboratoire de Biodiversité, Biotechnologies et Changements Climatiques (LR11ES09) Université Tunis El Manar Tunis Tunisie
| | | |
Collapse
|
8
|
Stankiewicz KH, Vasquez Kuntz KL, Baums IB. The impact of estimator choice: Disagreement in clustering solutions across K estimators for Bayesian analysis of population genetic structure across a wide range of empirical data sets. Mol Ecol Resour 2021; 22:1135-1148. [PMID: 34597471 DOI: 10.1111/1755-0998.13522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 08/21/2021] [Accepted: 09/07/2021] [Indexed: 11/29/2022]
Abstract
The software program STRUCTURE is one of the most cited tools for determining population structure. To infer the optimal number of clusters from STRUCTURE output, the ΔK method is often applied. However, a recent study relying on simulated microsatellite data suggested that this method has a downward bias in its estimation of K and is sensitive to uneven sampling. If this finding holds for empirical data sets, conclusions about the scale of gene flow may have to be revised for a large number of studies. To determine the impact of method choice, we applied recently described estimators of K to re-estimate genetic structure in 41 empirical microsatellite data sets; 15 from a broad range of taxa and 26 from one phylogenetic group, coral. We compared alternative estimates of K (Puechmaille statistics) with traditional (ΔK and posterior probability) estimates and found widespread disagreement of estimators across data sets. Thus, one estimator alone is insufficient for determining the optimal number of clusters; this was regardless of study organism or evenness of sampling scheme. Subsequent analysis of molecular variance (AMOVA) did not necessarily clarify which clustering solution was best. To better infer population structure, we suggest a combination of visual inspection of STRUCTURE plots and calculation of the alternative estimators at various thresholds in addition to ΔK. Disagreement between traditional and recent estimators may have important biological implications, such as previously unrecognized population structure, as was the case for many studies reanalysed here.
Collapse
Affiliation(s)
- Kathryn H Stankiewicz
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania, USA
| | - Kate L Vasquez Kuntz
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania, USA
| | | | | |
Collapse
|
9
|
Martinez S, Bellworthy J, Ferrier-Pagès C, Mass T. Selection of mesophotic habitats by Oculina patagonica in the Eastern Mediterranean Sea following global warming. Sci Rep 2021; 11:18134. [PMID: 34518595 PMCID: PMC8438053 DOI: 10.1038/s41598-021-97447-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 08/24/2021] [Indexed: 02/08/2023] Open
Abstract
Globally, species are migrating in an attempt to track optimal isotherms as climate change increasingly warms existing habitats. Stony corals are severely threatened by anthropogenic warming, which has resulted in repeated mass bleaching and mortality events. Since corals are sessile as adults and with a relatively old age of sexual maturity, they are slow to latitudinally migrate, but corals may also migrate vertically to deeper, cooler reefs. Herein we describe vertical migration of the Mediterranean coral Oculina patagonica from less than 10 m depth to > 30 m. We suggest that this range shift is a response to rapidly warming sea surface temperatures on the Israeli Mediterranean coastline. In contrast to the vast latitudinal distance required to track temperature change, this species has migrated deeper where summer water temperatures are up to 2 °C cooler. Comparisons of physiology, morphology, trophic position, symbiont type, and photochemistry between deep and shallow conspecifics revealed only a few depth-specific differences. At this study site, shallow colonies typically inhabit low light environments (caves, crevices) and have a facultative relationship with photosymbionts. We suggest that this existing phenotype aided colonization of the mesophotic zone. This observation highlights the potential for other marine species to vertically migrate.
Collapse
Affiliation(s)
- Stephane Martinez
- grid.18098.380000 0004 1937 0562Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel ,grid.18098.380000 0004 1937 0562Morris Kahn Marine Research Station, The Leon H. Charney School of Marine Sciences, University of Haifa, Sdot Yam, Israel ,grid.452353.60000 0004 0550 8241Coral Ecophysiology Team, Centre Scientifique de Monaco, 8 Quai Antoine 1er, Monaco City, 98000 Monaco
| | - Jessica Bellworthy
- grid.18098.380000 0004 1937 0562Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel ,grid.440849.50000 0004 0496 208XThe Interuniversity Institute of Marine Sciences, Eilat, Israel
| | - Christine Ferrier-Pagès
- grid.452353.60000 0004 0550 8241Coral Ecophysiology Team, Centre Scientifique de Monaco, 8 Quai Antoine 1er, Monaco City, 98000 Monaco
| | - Tali Mass
- grid.18098.380000 0004 1937 0562Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel ,grid.18098.380000 0004 1937 0562Morris Kahn Marine Research Station, The Leon H. Charney School of Marine Sciences, University of Haifa, Sdot Yam, Israel
| |
Collapse
|
10
|
Aichelman HE, Barshis DJ. Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States. PeerJ 2020; 8:e10201. [PMID: 33240603 PMCID: PMC7680023 DOI: 10.7717/peerj.10201] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 09/27/2020] [Indexed: 12/11/2022] Open
Abstract
Astrangia poculata is a temperate scleractinian coral that exists in facultative symbiosis with the dinoflagellate alga Breviolum psygmophilum across a range spanning the Gulf of Mexico to Cape Cod, Massachusetts. Our previous work on metabolic thermal performance of Virginia (VA) and Rhode Island (RI) populations of A. poculata revealed physiological signatures of cold (RI) and warm (VA) adaptation of these populations to their respective local thermal environments. Here, we used whole-transcriptome sequencing (mRNA-Seq) to evaluate genetic differences and identify potential loci involved in the adaptive signature of VA and RI populations. Sequencing data from 40 A. poculata individuals, including 10 colonies from each population and symbiotic state (VA-white, VA-brown, RI-white, and RI-brown), yielded a total of 1,808 host-associated and 59 algal symbiont-associated single nucleotide polymorphisms (SNPs) post filtration. Fst outlier analysis identified 66 putative high outlier SNPs in the coral host and 4 in the algal symbiont. Differentiation of VA and RI populations in the coral host was driven by putatively adaptive loci, not neutral divergence (Fst = 0.16, p = 0.001 and Fst = 0.002, p = 0.269 for outlier and neutral SNPs respectively). In contrast, we found evidence of neutral population differentiation in B. psygmophilum (Fst = 0.093, p = 0.001). Several putatively adaptive host loci occur on genes previously associated with the coral stress response. In the symbiont, three of four putatively adaptive loci are associated with photosystem proteins. The opposing pattern of neutral differentiation in B. psygmophilum, but not the A. poculata host, reflects the contrasting dynamics of coral host and algal symbiont population connectivity, dispersal, and gene by environment interactions.
Collapse
Affiliation(s)
- Hannah E Aichelman
- Department of Biology, Boston University, Boston, MA, USA.,Department of Biological Sciences, Old Dominion University, Norfolk, VA, USA
| | - Daniel J Barshis
- Department of Biological Sciences, Old Dominion University, Norfolk, VA, USA
| |
Collapse
|
11
|
The Genome Sequence of the Octocoral Paramuricea clavata - A Key Resource To Study the Impact of Climate Change in the Mediterranean. G3-GENES GENOMES GENETICS 2020; 10:2941-2952. [PMID: 32660973 PMCID: PMC7467007 DOI: 10.1534/g3.120.401371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The octocoral, Paramuricea clavata, is a habitat-forming anthozoan with a key ecological role in rocky benthic and biodiversity-rich communities in the Mediterranean and Eastern Atlantic. Shallow populations of P. clavata in the North-Western Mediterranean are severely affected by warming-induced mass mortality events (MMEs). These MMEs have differentially impacted individuals and populations of P. clavata (i.e., varied levels of tissue necrosis and mortality rates) over thousands of kilometers of coastal areas. The eco-evolutionary processes, including genetic factors, contributing to these differential responses remain to be characterized. Here, we sequenced a P. clavata individual with short and long read technologies, producing 169.98 Gb of Illumina paired-end and 3.55 Gb of Oxford Nanopore Technologies (ONT) reads. We obtained a de novo genome assembly accounting for 607 Mb in 64,145 scaffolds. The contig and scaffold N50s are 19.15 Kb and 23.92 Kb, respectively. Despite of the low contiguity of the assembly, its gene completeness is relatively high, including 75.8% complete and 9.4% fragmented genes out of the 978 metazoan genes contained in the metazoa_odb9 database. A total of 62,652 protein-coding genes have been annotated. This assembly is one of the few octocoral genomes currently available. This is undoubtedly a valuable resource for characterizing the genetic bases of the differential responses to thermal stress and for the identification of thermo-resistant individuals and populations. Overall, having the genome of P. clavata will facilitate studies of various aspects of its evolutionary ecology and elaboration of effective conservation plans such as active restoration to overcome the threats of global change.
Collapse
|
12
|
Pinsky ML, Selden RL, Kitchel ZJ. Climate-Driven Shifts in Marine Species Ranges: Scaling from Organisms to Communities. ANNUAL REVIEW OF MARINE SCIENCE 2020; 12:153-179. [PMID: 31505130 DOI: 10.1146/annurev-marine-010419-010916] [Citation(s) in RCA: 119] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The geographic distributions of marine species are changing rapidly, with leading range edges following climate poleward, deeper, and in other directions and trailing range edges often contracting in similar directions. These shifts have their roots in fine-scale interactions between organisms and their environment-including mosaics and gradients of temperature and oxygen-mediated by physiology, behavior, evolution, dispersal, and species interactions. These shifts reassemble food webs and can have dramatic consequences. Compared with species on land, marine species are more sensitive to changing climate but have a greater capacity for colonization. These differences suggest that species cope with climate change at different spatial scales in the two realms and that range shifts across wide spatial scales are a key mechanism at sea. Additional research is needed to understand how processes interact to promote or constrain range shifts, how the dominant responses vary among species, and how the emergent communities of the future ocean will function.
Collapse
Affiliation(s)
- Malin L Pinsky
- Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, New Jersey 08901, USA;
| | - Rebecca L Selden
- Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, New Jersey 08901, USA;
| | - Zoë J Kitchel
- Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, New Jersey 08901, USA;
| |
Collapse
|
13
|
Cerrano C, Bastari A, Calcinai B, Di Camillo C, Pica D, Puce S, Valisano L, Torsani F. Temperate mesophotic ecosystems: gaps and perspectives of an emerging conservation challenge for the Mediterranean Sea. EUROPEAN ZOOLOGICAL JOURNAL 2019. [DOI: 10.1080/24750263.2019.1677790] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- C. Cerrano
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - A. Bastari
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - B. Calcinai
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - C. Di Camillo
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - D. Pica
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - S. Puce
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - L. Valisano
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - F. Torsani
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| |
Collapse
|
14
|
Montero‐Serra I, Garrabou J, Doak DF, Ledoux J, Linares C. Marine protected areas enhance structural complexity but do not buffer the consequences of ocean warming for an overexploited precious coral. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13321] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ignasi Montero‐Serra
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Institut de Recerca de la Biodiversitat (IRBIO) Universitat de Barcelona Barcelona Spain
| | - Joaquim Garrabou
- Institut de Ciències del Mar CSIC Barcelona Spain
- Aix Marseille Université Université de Toulon CNRS, IRD, MIO Marseille France
| | - Daniel F. Doak
- Environmental Studies Program University of Colorado Boulder Colorado
| | - Jean‐Baptiste Ledoux
- Institut de Ciències del Mar CSIC Barcelona Spain
- CIIMAR/CIMAR Centro Interdisciplinar de Investigação Marinha e Ambiental Universidade do Porto Porto Portugal
| | - Cristina Linares
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Institut de Recerca de la Biodiversitat (IRBIO) Universitat de Barcelona Barcelona Spain
| |
Collapse
|
15
|
Adaptive marine conservation planning in the face of climate change: What can we learn from physiological, ecological and genetic studies? Glob Ecol Conserv 2019. [DOI: 10.1016/j.gecco.2019.e00566] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
|
16
|
From depth to regional spatial genetic differentiation of Eunicella cavolini in the NW Mediterranean. C R Biol 2018; 341:421-432. [PMID: 30318420 DOI: 10.1016/j.crvi.2018.09.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Revised: 09/12/2018] [Accepted: 09/15/2018] [Indexed: 11/23/2022]
Abstract
Connectivity studies in the marine realm are of great importance to understand the evolutionary potential of populations in a context of growing pressures on the marine environment. Here, we investigated the effect of the local, regional, and depth spatial scale on the population genetic structure of the yellow gorgonian Eunicella cavolini, one of the most common octocoral species of the Mediterranean hard-bottom communities. This species, along with other sessile metazoans typical of coralligenous ecosystems, plays an important role in supporting biodiversity, but is also impacted by direct and indirect consequences of human activities, such as physical destruction or mortality events due to thermal anomalies. Samples were taken from 15 sites located in the Ligurian Sea (NW Mediterranean) in two adjacent regions 100 kilometres apart, i.e. from the areas of Marseille (France) and Portofino (Genoa, Italy), and were analysed using six microsatellite loci. A pattern of isolation by distance was observed at the regional as well as the local scales. Although E. cavolini showed less genetic structure than other Mediterranean octocorallian species, we observed a significant genetic differentiation between populations a few kilometres apart. A low genetic differentiation was also observed between shallow and deep populations. The occurrence of genetically differentiated populations of E. cavolini at the scale of kilometres has important consequences for the management of this species and of the associated communities.
Collapse
|
17
|
Costantini F, Rugiu L, Cerrano C, Abbiati M. Living upside down: patterns of red coral settlement in a cave. PeerJ 2018; 6:e4649. [PMID: 29844950 PMCID: PMC5967367 DOI: 10.7717/peerj.4649] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 03/29/2018] [Indexed: 11/20/2022] Open
Abstract
Background Larval settlement and intra-specific interactions during the recruitment phase are crucial in determining the distribution and density of sessile marine populations. Marine caves are confined and stable habitats. As such, they provide a natural laboratory to study the settlement and recruitment processes in sessile invertebrates, including the valuable Mediterranean red coral Corallium rubrum. In the present study, the spatial and temporal variability of red coral settlers in an underwater cave was investigated by demographic and genetic approaches. Methods Sixteen PVC tiles were positioned on the walls and ceiling of the Colombara Cave, Ligurian Sea, and recovered after twenty months. A total of 372 individuals of red coral belonging to two different reproductive events were recorded. Basal diameter, height, and number of polyps were measured, and seven microsatellites loci were used to evaluate the genetic relationships among individuals and the genetic structure. Results Significant differences in the colonization rate were observed both between the two temporal cohorts and between ceiling and walls. No genetic structuring was observed between cohorts. Overall, high levels of relatedness among individuals were found. Conclusion The results show that C. rubrumindividuals on tiles are highly related at very small spatial scales, suggesting that nearby recruits are likely to be sibs. Self-recruitment and the synchronous settlement of clouds of larvae could be possible explanations for the observed pattern.
Collapse
Affiliation(s)
- Federica Costantini
- Department of Biological, Geological and Environmental Sciences (BiGEA), University of Bologna, Ravenna, Italy.,Centro Interdipartimentale di Ricerca per le Scienze Ambientali (CIRSA), Ravenna, Italy.,CoNISMa, Roma, Italy
| | - Luca Rugiu
- Section of Ecology, Department of Biology, University of Turku, Turku, Finland
| | - Carlo Cerrano
- CoNISMa, Roma, Italy.,Department of Life and Environmental Science (DiSVA), Università Politecnica delle Marche, Ancona, Italy
| | - Marco Abbiati
- Centro Interdipartimentale di Ricerca per le Scienze Ambientali (CIRSA), Ravenna, Italy.,CoNISMa, Roma, Italy.,Istituto di Scienze Marine (ISMAR), Consiglio Nazionale delle Ricerche, Bologna, Italy.,Department of Cultural Heritage, University of Bologna, Ravenna, Italy
| |
Collapse
|
18
|
Attard CRM, Brauer CJ, Sandoval-Castillo J, Faulks LK, Unmack PJ, Gilligan DM, Beheregaray LB. Ecological disturbance influences adaptive divergence despite high gene flow in golden perch (Macquaria ambigua): Implications for management and resilience to climate change. Mol Ecol 2017; 27:196-215. [PMID: 29165848 DOI: 10.1111/mec.14438] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Revised: 10/31/2017] [Accepted: 11/04/2017] [Indexed: 01/01/2023]
Abstract
Populations that are adaptively divergent but maintain high gene flow may have greater resilience to environmental change as gene flow allows the spread of alleles that have already been tested elsewhere. In addition, populations naturally subjected to ecological disturbance may already hold resilience to future environmental change. Confirming this necessitates ecological genomic studies of high dispersal, generalist species. Here we perform one such study on golden perch (Macquaria ambigua) in the Murray-Darling Basin (MDB), Australia, using a genome-wide SNP data set. The MDB spans across arid to wet and temperate to subtropical environments, with low to high ecological disturbance in the form of low to high hydrological variability. We found high gene flow across the basin and three populations with low neutral differentiation. Genotype-environment association analyses detected adaptive divergence predominantly linked to an arid region with highly variable riverine flow, and candidate loci included functions related to fat storage, stress and molecular or tissue repair. The high connectivity of golden perch in the MDB will likely allow locally adaptive traits in its most arid and hydrologically variable environment to spread and be selected in localities that are predicted to become arid and hydrologically variable in future climates. High connectivity in golden perch is likely due to their generalist life history and efforts of fisheries management. Our study adds to growing evidence of adaptation in the face of gene flow and highlights the importance of considering ecological disturbance and adaptive divergence in biodiversity management.
Collapse
Affiliation(s)
- Catherine R M Attard
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - Chris J Brauer
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - Jonathan Sandoval-Castillo
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - Leanne K Faulks
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia.,Sugadaira Research Station, Mountain Science Center, University of Tsukuba, Nagano, Japan
| | - Peter J Unmack
- Institute for Applied Ecology, University of Canberra, Canberra, ACT, Australia
| | - Dean M Gilligan
- New South Wales Department of Primary Industries, Batemans Bay Fisheries Centre, Batemans Bay, NSW, Australia
| | - Luciano B Beheregaray
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| |
Collapse
|
19
|
Crisci C, Ledoux JB, Mokhtar-Jamaï K, Bally M, Bensoussan N, Aurelle D, Cebrian E, Coma R, Féral JP, La Rivière M, Linares C, López-Sendino P, Marschal C, Ribes M, Teixidó N, Zuberer F, Garrabou J. Regional and local environmental conditions do not shape the response to warming of a marine habitat-forming species. Sci Rep 2017; 7:5069. [PMID: 28698582 PMCID: PMC5505982 DOI: 10.1038/s41598-017-05220-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 05/25/2017] [Indexed: 11/20/2022] Open
Abstract
The differential response of marine populations to climate change remains poorly understood. Here, we combine common garden thermotolerance experiments in aquaria and population genetics to disentangle the factors driving the population response to thermal stress in a temperate habitat-forming species: the octocoral Paramuricea clavata. Using eight populations separated from tens of meters to hundreds of kilometers, which were differentially impacted by recent mortality events, we identify 25 °C as a critical thermal threshold. After one week of exposure at this temperature, seven of the eight populations were affected by tissue necrosis and after 30 days of exposure at this temperature, the mean % of affected colonies increased gradually from 3 to 97%. We then demonstrate the weak relation between the observed differential phenotypic responses and the local temperature regimes experienced by each population. A significant correlation was observed between these responses and the extent of genetic drift impacting each population. Local adaptation may thus be hindered by genetic drift, which seems to be the main driver of the differential response. Accordingly, conservation measures should promote connectivity and control density erosion in order to limit the impact of genetic drift on marine populations facing climate change.
Collapse
Affiliation(s)
- C Crisci
- Polo de Desarrollo Universitario Modelización y Análisis de Recursos Naturales, Centro Universitario Regional del Este, Universidad de la República, Rocha, 27000, Uruguay.
| | - J-B Ledoux
- CIIMAR/CIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Porto, 4050-123, Portugal
- Institute of Marine Sciences (ICM-CSIC), Barcelona, 08003, Spain
| | - K Mokhtar-Jamaï
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Station Marine d'Endoume, Marseille, 13007, France
| | - M Bally
- Aix-Marseille Université, Mediterranean Institute of Oceanography (M I O), Université de Toulon, CNRS/IRD, Marseille, France
| | - N Bensoussan
- IPSO FACTO, SCOPArl, Pole Océanologie, Marseille, 13001, France
| | - D Aurelle
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Station Marine d'Endoume, Marseille, 13007, France
| | - E Cebrian
- Centre for Advanced Studies of Blanes (CEAB-CSIC), Blanes, 17300, Spain
- Departament de Ciències Ambientals, Facultat de Ciències, Universitat de Girona, Girona, 17071, Spain
| | - R Coma
- Centre for Advanced Studies of Blanes (CEAB-CSIC), Blanes, 17300, Spain
| | - J-P Féral
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Station Marine d'Endoume, Marseille, 13007, France
| | - M La Rivière
- Aix-Marseille Université, Mediterranean Institute of Oceanography (M I O), Université de Toulon, CNRS/IRD, Marseille, France
| | - C Linares
- Departament d'Ecologia, Universitat de Barcelona, Barcelona, 08028, Spain
| | - P López-Sendino
- Institute of Marine Sciences (ICM-CSIC), Barcelona, 08003, Spain
| | - C Marschal
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Station Marine d'Endoume, Marseille, 13007, France
| | - M Ribes
- Institute of Marine Sciences (ICM-CSIC), Barcelona, 08003, Spain
| | - N Teixidó
- Stazione Zoologica Anton Dohrn, Villa Dohrn-Benthic Ecology Center, Punta San Pietro, Ischia, Naples, 80077, Italy
| | - F Zuberer
- Institut Pytheas, UMS 3470, CNRS, Marseille, 13013, France
| | - J Garrabou
- Institute of Marine Sciences (ICM-CSIC), Barcelona, 08003, Spain
- Aix-Marseille Université, Mediterranean Institute of Oceanography (M I O), Université de Toulon, CNRS/IRD, Marseille, France
| |
Collapse
|
20
|
Ledoux JB, Antunes A. Beyond the beaten path: improving natural products bioprospecting using an eco-evolutionary framework - the case of the octocorals. Crit Rev Biotechnol 2017. [PMID: 28651436 DOI: 10.1080/07388551.2017.1331335] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Marine natural products (NPs) represent an impressive source of novel bioactive molecules with major biotechnological applications. Nevertheless, the usual chemical and applied perspective leading most of bioprospecting projects come along with various limitations blurring our understanding of the extensive marine chemical diversity. Here, we propose several guidelines: (i) to optimize bioprospecting and (ii) to refine our knowledge on marine chemical ecology focusing on octocorals, one of the most promising sources of marine NPs. We identified a significant phylogenetic bias in the octocoral bioprospecting, which calls for the development of a concerted discovery strategy. Given the gap existing between the number of isolated NPs and the knowledge regarding their functions, we provide an ecologically centered workflow prioritizing biological function ahead of chemical identification. Furthermore, we illustrate how -omic technologies should rapidly increase our knowledge on solving different aspects of the ecology and evolution of marine NPs.
Collapse
Affiliation(s)
- Jean-Baptiste Ledoux
- a CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research , University of Porto , Porto , Portugal.,b Institut de Ciències del Mar (ICM-CSIC) , Barcelona , Spain
| | - Agostinho Antunes
- a CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research , University of Porto , Porto , Portugal.,c Department of Biology, Faculty of Sciences , University of Porto , Porto , Portugal
| |
Collapse
|
21
|
Kersting DK, Cebrian E, Casado C, Teixidó N, Garrabou J, Linares C. Experimental evidence of the synergistic effects of warming and invasive algae on a temperate reef-builder coral. Sci Rep 2015; 5:18635. [PMID: 26692424 PMCID: PMC4686896 DOI: 10.1038/srep18635] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 11/20/2015] [Indexed: 12/27/2022] Open
Abstract
In the current global climate change scenario, stressors overlap in space and time, and knowledge on the effects of their interaction is highly needed to understand and predict the response and resilience of organisms. Corals, among many other benthic organisms, are affected by an increasing number of global change-related stressors including warming and invasive species. In this study, the cumulative effects between warming and invasive algae were experimentally assessed on the temperate reef-builder coral Cladocora caespitosa. We first investigated the potential local adaptation to thermal stress in two distant populations subjected to contrasting thermal and necrosis histories. No significant differences were found between populations. Colonies from both populations suffered no necrosis after long-term exposure to temperatures up to 29 °C. Second, we tested the effects of the interaction of both warming and the presence of invasive algae. The combined exposure triggered critical synergistic effects on photosynthetic efficiency and tissue necrosis. At the end of the experiment, over 90% of the colonies subjected to warming and invasive algae showed signs of necrosis. The results are of particular concern when considering the predicted increase of extreme climatic events and the spread of invasive species in the Mediterranean and other seas in the future.
Collapse
Affiliation(s)
- Diego K Kersting
- Departament d’Ecologia. Facultat de Biologia. Universitat de Barcelona (UB), 08028 Barcelona, Spain
| | - Emma Cebrian
- Centre d’Estudis Avançats de Blanes (CSIC), 17300 Girona, Spain
- Departament de Ciències Ambientals. Facultat de Ciències. Universitat de Girona, 17004 Girona, Spain
| | - Clara Casado
- Departament d’Ecologia. Facultat de Biologia. Universitat de Barcelona (UB), 08028 Barcelona, Spain
| | - Núria Teixidó
- Institut Ciències del Mar (ICM-CSIC), 08003 Barcelona, Spain
- Stazione Zoologica Anton Dohrn, 80121 Naples, Italy
| | - Joaquim Garrabou
- Institut Ciències del Mar (ICM-CSIC), 08003 Barcelona, Spain
- Aix-Marseille University, Mediterranean Institute of Oceanography (MIO), 13288, Marseille, Cedex 9; Université de Toulon, 83957, CNRS/IRD, France
| | - Cristina Linares
- Departament d’Ecologia. Facultat de Biologia. Universitat de Barcelona (UB), 08028 Barcelona, Spain
| |
Collapse
|
22
|
Pivotto ID, Nerini D, Masmoudi M, Kara H, Chaoui L, Aurelle D. Highly contrasted responses of Mediterranean octocorals to climate change along a depth gradient. ROYAL SOCIETY OPEN SCIENCE 2015; 2:140493. [PMID: 26064654 PMCID: PMC4453260 DOI: 10.1098/rsos.140493] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Accepted: 04/10/2015] [Indexed: 06/04/2023]
Abstract
Climate change has a strong impact on marine ecosystems, including temperate species. Analysing the diversity of thermotolerance levels within species along with their genetic structure enables a better understanding of their potential response to climate change. We performed this integrative study on the Mediterranean octocoral Eunicella cavolini, with samples from different depths and by means of a common garden experiment. This species does not host photosynthetic Symbiodinium, enabling us to focus on the cnidarian response. We compared the thermotolerance of individuals from 20 m and 40 m depths from the same site and with replicates from the same colony. On the basis of an innovative statistical analysis of necrosis kinetics and risk, we demonstrated the occurrence of a very different response between depths at this local scale, with lower thermotolerance of deep individuals. Strongly thermotolerant individuals were observed at 20 m with necrosis appearing at higher temperatures than observed in situ. On the basis of nine microsatellite loci, we showed that these marked thermotolerance differences occur within a single population. This suggests the importance of acclimatization processes in adaptation to these different depths. In addition, differences between replicates demonstrated the occurrence of a variability of response between fragments from the same colony with the possibility of an interaction with a tank effect. Our results provide a basis for studying adaptation and acclimatization in Mediterranean octocorals in a heterogeneous environment.
Collapse
Affiliation(s)
- I. D. Pivotto
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Marseille 13397, France
| | - D. Nerini
- Aix Marseille Université, CNRS, Université de Toulon, IRD, MIO UMR 7294, Marseille 13288, France
| | - M. Masmoudi
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Marseille 13397, France
- Laboratoire Bioressources Marines – Université d'Annaba, Badji Mokhtar, BP 230, Oued Kouba, Annaba 23008, Algeria
| | - H. Kara
- Laboratoire Bioressources Marines – Université d'Annaba, Badji Mokhtar, BP 230, Oued Kouba, Annaba 23008, Algeria
| | - L. Chaoui
- Laboratoire Bioressources Marines – Université d'Annaba, Badji Mokhtar, BP 230, Oued Kouba, Annaba 23008, Algeria
| | - D. Aurelle
- Aix Marseille Université, CNRS, IRD, Avignon Université, IMBE UMR 7263, Marseille 13397, France
| |
Collapse
|