Habitat effects on intra-species variation in functional morphology: Evidence from freshwater fish

Geometric morphometric analysis of body shape and sexual dimorphism in Colossoma macropomum

BACKGROUND

This study investigates sexual dimorphism in Colossoma macropomum using geometric and linear morphometrics.

METHODS

A total of 26 specimens (14 females, 12 males) were analysed through shape analysis (MorphoJ) and linear measurements (ImageJ). Statistical analysis of both linear and geometric morphometry was performed using the PAST program.

RESULTS

Geometric morphometric analysis identified statistically significant differences in body shape between males and females. Females were characterised by a shorter and narrower body form, while males exhibited a longer and broader morphology. Notably, the caudal fin base's flexion axis, along with the position and length of the anal fin, were highlighted as key anatomical regions for distinguishing between adult males and females. Linear morphometric analysis further revealed significant sex-specific variations, particularly in the head region and anterior body width.

CONCLUSION

The findings integrate quantitative data from linear morphometric with visualised results from geometric morphometric analysis, providing a detailed assessment of morphological distinctions. Potential drivers of these differences, including reproductive strategies, feeding behaviours, population density, genetic structure, aquaculture practices, water depth, and ecological niche differentiation, were explored to explain the observed sexual dimorphism. This research provides valuable insights into the morphological variation and evolutionary mechanisms underlying sexual dimorphism in Colossoma macropomum, with implications for species management and conservation. Moreover, it represents a novel contribution as the first comprehensive study to utilise geometric morphometric techniques to elucidate shape differences between male and female individuals of this species.

Changes in the food selectivity of zooplanktivorous fishes related to the effects of nutrient enrichment in an urban tropical estuary

Juvenile fish use estuarine ecosystems due to appropriate refuges and food supply found in these environments. The objective of this study was to investigate whether variations in the diet composition of juvenile fishes were mediated by changes in the availability of zooplankton prey in an urban estuary. Changes in fish foraging and prey selectivity were affected by nutrient enrichment. Calanoida and Cyclopoida were the most abundant items present in all zones and seasons, and for this reason, these were the items that most contributed to the fish diet. Shift in feeding strategy associated with eutrophication was registered due to a decrease in water quality. All species showed some contamination with microplastic particles and exhibited selectivity over them. The use of food resources available for fish is likely to be representative of estuarine habitat quality and may provide valuable information on the ecological status of estuaries.

WingAnalogy: a computer vision-based tool for automated insect wing asymmetry and morphometry analysis

WingAnalogy is a computer tool for automated insect wing morphology and asymmetry analysis. It facilitates project management, enabling users to import pairs of wing images obtained from individual insects, such as left and right, fore- and hindwings. WingAnalogy employs image processing and computer vision to segment wing structures and extract cell boundaries, and junctions. It quantifies essential metrics encompassing cell and wing characteristics, including area, length, width, circularity, and centroid positions. It enables users to scale and superimpose wing images utilizing Particle Swarm Optimization (PSO). WingAnalogy computes regression, Normalized Root Mean Square Error (NRMSE), various cell-based parameters, and distances between cell centroids and junctions. The software generates informative visualizations, aiding researchers in comprehending and interpreting asymmetry patterns. WingAnalogy allows for dividing wings into up to five distinct wing cell sets, facilitating localized comparisons. The software excels in report generation, providing detailed asymmetry measurements in PDF, CSV, and TXT formats.

Historical Field Records Reveal Habitat as an Ecological Correlate of Locomotor Phenotypic Diversity in the Radiation of Neotropical Geophagini Fishes

AbstractPhenotypic macroevolutionary studies provide insight into how ecological processes shape biodiversity. However, the complexity of phenotype-ecology relationships underscores the importance of also validating phenotype-based ecological inference with direct evidence of resource use. Unfortunately, macroevolutionary-scale ecological studies are often hindered by the challenges of acquiring taxonomically and spatially representative ecological data for large and widely distributed clades. The South American cichlid fish tribe Geophagini represents a continentally distributed radiation whose early locomotor morphological divergence suggests habitat as one ecological correlate of diversification, but an association between locomotor traits and habitat preference has not been corroborated. Field notes accumulated over decades of collecting across South America provide firsthand environmental records that can be mined for habitat data in support of macroevolutionary ecological research. In this study, we applied a newly developed method to transform descriptive field note information into quantitative habitat data and used it to assess habitat preference and its relationship to locomotor morphology in Geophagini. Field note-derived data shed light on geophagine habitat use patterns and reinforced habitat as an ecological correlate of locomotor morphological diversity. Our work emphasizes the rich data potential of museum collections, including often-overlooked material such as field notes, for evolutionary and ecological research.

Ecophenotypic Variation of Midas Cichlid, Amphilophus citrinellus (Gunther, 1864), in Lake Batur, Bali, Indonesia

Cichlid fishes exhibit rapid adaptive radiations with significant diversification rates in response to ecological variability, i.e., ecological opportunity or geographical isolation. The discovery of a Midas cichlid species in Lake Batur, Indonesia's largest volcanic lake, first reported in 2013, could represent such adaptations. Midas cichlids can now be found in a range of habitats in Lake Batur and dominate the lake's fish population by up to 60%. This study aimed to identify the interaction between habitat, water quality, and Midas cichlid in Lake Batur, facilitating morphometric variances in the fish populations. The fish were captured at five locations in Lake Batur using fishing rods, community nets with mesh sizes of 2-3 inches, experimental gillnets with mesh sizes of 1 inch, and fish scoops in floating net cages during August and November 2022. There were 46 fish samples caught from the five stations, all photographed using a digital camera and later measured using the ZEN 2012 software. The fish measurement employed a truss morphometric method using 21 distinct morphometric body features. Canonical analysis was used to determine the distribution of characteristics, while discriminant analysis was used to examine the closeness of association. The measured water quality parameters included pH, DO, temperature, conductivity, and TDS for in-situ and TSS, TP, TN, and chlorophyll A for ex-situ. The findings revealed morphometric changes among Midas cichlid species in Lake Batur caused by habitat and water quality differences. The distinction can be detected in the anterior and posterior bodies (C1, B1, C3, C6, C5, B3 and B4). Temperature and aquatic plants, Azolla pinnata, may detect the station and shape of fish in Lake Batur. Body shape cannot be identified by chlorophyll A, TN, DO, and TDS. Future genetic research could answer why fish groups with varied body types coexist in the same location.

Effects of microhabitat features on the intraspecific variability of the distribution and functional traits in a highest elevational distributed lizard

Exploring the microhabitat determinants of organisms distribution and functional traits differences can help us better understand the importance of intraspecific variations in ecological niches. Investigations on animals functional niche primarily focused on differences among species and tended to neglect the potential variability within species, despite the fact that the ecological and evolutionary importance of intraspecific variations was widely recognized. In this study, we examined the influence of microhabitat features on the intraspecific variability of the distribution and functional traits of a highest elevational distributed lizard species Phrynocephalus erythrurus. To do so, field work was conducted between July and August, 2020 and August and September, 2021 in Namtso watershed in central Xizang, China. Specifically, 11 transects were sampled for P. erythrurus individuals, which were measured for a set of 10 morphological traits. Moreover, 11 microhabitat variables that potentially affect the distribution of lizards were also measured for each transect. Our results indicated that juveniles, males, and females exhibited different functional traits, allowing them to occupy distinct functional space. The distribution of juveniles, males, and females was determined by different microhabitat variables such as illuminance and air temperature. More importantly, these variables also determined the intraspecific functional traits variability in this lizard species. All of these results supported previous claims that intraspecific traits variation should be incorporated into functional ecological studies, and diverse microhabitat features should be conserved to maintain high intraspecific diversity. Future studies can focus on the food analysis to explore the linkage between functional traits and resources utilization within animal populations.

Environmental selection, rather than neutral processes, best explain regional patterns of diversity in a tropical rainforest fish

To conserve the high functional and genetic variation in hotspots such as tropical rainforests, it is essential to understand the forces driving and maintaining biodiversity. We asked to what extent environmental gradients and terrain structure affect morphological and genomic variation across the wet tropical distribution of an Australian rainbowfish, Melanotaenia splendida splendida. We used an integrative riverscape genomics and morphometrics framework to assess the influence of these factors on both putative adaptive and non-adaptive spatial divergence. We found that neutral genetic population structure was largely explainable by restricted gene flow among drainages. However, environmental associations revealed that ecological variables had a similar power to explain overall genetic variation, and greater power to explain body shape variation, than the included neutral covariables. Hydrological and thermal variables were the strongest environmental predictors and were correlated with traits previously linked to heritable habitat-associated dimorphism in rainbowfishes. In addition, climate-associated genetic variation was significantly associated with morphology, supporting heritability of shape variation. These results support the inference of evolved functional differences among localities, and the importance of hydroclimate in early stages of diversification. We expect that substantial evolutionary responses will be required in tropical rainforest endemics to mitigate local fitness losses due to changing climates.

Using otolith and body shape to discriminate between stocks of European anchovy (Engraulidae: Engraulis encrasicolus) from the Aegean, Marmara and Black Seas

European anchovy, a small pelagic fish, plays a significant role in the blue economy, with remarkable commercial, ecological and culinary values. In this study, the variability in the shapes of the body and sagitta otoliths was examined to identify the different anchovy stocks in the Black Sea (26.5°E-39.9°E, 38.7° N-42.1°N) and adjacent regions, i.e., the Sea of Marmara and the Aegean Sea. The body shape was assessed with geometric morphometrics, while shape indices and elliptic Fourier analysis were used to evaluate the shape of the sagitta otoliths. The data were analysed using multivariate and univariate analysis of variance, discriminant function and principal component analysis. The anchovy population could be divided into five distinct stocks based on body shape, with an overall leave-one-out cross-validated correct classification of 85.6%. The geometric morphometrics revealed significant differences in body depth, snout, lower jaw and caudal fin. The differences in sagitta otolith shape also revealed the existence of four distinct stocks with an overall leave-one-out cross-validated correct classification of 46.5%-69.3%. The elliptic Fourier analysis revealed two main stocks of anchovy from the Black Sea as the Eastern-Middle Black Sea stock and the Western Black Sea stock. Based on the elliptic Fourier analysis, the differences in the sagitta otoliths increase in magnitude with increasing geographic separation, first manifested at the otolith anterior notch, followed by changes in the otolith width. The findings affirmed the existence of distinct stocks that should have important implications for effective management of this pelagic fish in the Black Sea and adjacent regions.

Consumer trait responses track change in resource supply along replicated thermal gradients

Rising temperatures may alter consumer diets through increased metabolic demand and altered resource availability. However, current theories assessing dietary shifts with warming do not account for a change in resource availability. It is unknown whether consumers will increase consumption rates or consume different resources to meet increased energy requirements and whether the dietary change will lead to associated variation in morphology and nutrient utilization. Here, we used populations of Gambusia affinis across parallel thermal gradients in New Zealand (NZ) and California (CA) to understand the influence of temperature on diets, morphology and stoichiometric phenotypes. Our results show that with increasing temperature in NZ, mosquitofish consumed more plant material, whereas in CA mosquitofish shifted towards increased consumption of invertebrate prey. In both regions, populations with plant-based diets had fuller guts, longer relative gut lengths, better-orientated mouths and reduced body elemental %C and N/P. Together, our results show multiple pathways by which consumers may alter their feeding patterns with rising temperatures, and they suggest that warming-induced changes to resource availability may be the principal determinant of which pathway is taken.

Population genetic structure of sharpbelly Hemiculter leucisculus (Basilesky, 1855) and morphological diversification along climate gradients in China

Sharpbelly Hemiculter leucisculus (Basilewski, 1855) is a small, widespread, and native cyprinid fish with prominent habitat suitability and high invasive potential and is becoming the dominant species in freshwater ecosystems under intensified environmental disturbances. But how H. leucisculus acclimates to extremely heterogeneous environments remains unclear. In current study, the genetic structure of H. leucisculus was analyzed using Bayesian phylogenetic inference, haplotype network, and STRUCTURE base on cytb gene across 18 populations spanning 20 degrees of latitude and 18 degrees of longitude in China. The morphological diversification of body size and shape for H. leucisculus along the climate gradient was studied. The results showed that the 18 H. leucisculus populations were divided into 3 clusters: one cluster mainly from Huanghe River Basin, another cluster mainly from Yangzi River Basin, and H cluster containing Hainan and Beihai populations. The fish from southern populations were deeper bodied while individuals from northern populations were more slender. Inland individuals were more streamlined while coastal individuals were of deeper body. The partial Mantel test predicts that the potential mechanism underlining the intraspecies morphological diversification along climate gradients is primarily the divergent selection pressures among different environments, while genetic variation had less contribution to morphological differentiation. The formation of the Nanling Mountain Range could drive genetic differentiation between Beihai population and those from Yangzi River Basin. The present results highlight strong selective pressures of climate on widespread species and enrich morphological differentiation basis of acclimation for species with high habitat suitability and invasive potential.

Diet overlap among non-native trout species and native cutthroat Trout (Oncorhynchus clarkii) in two U.S. ecoregions

The invasion of freshwater ecosystems by non-native species can constitute a significant threat to native species and ecosystem health. Non-native trouts have long been stocked in areas where native trouts occur and have negatively impacted native trouts through predation, competition, and hybridization. This study encompassed two seasons of sampling efforts across two ecoregions of the western United States: The Great Basin in summer 2016 and the Yellowstone River Basin in summer 2017. We found significant dietary overlaps among native and non-native trouts within the Great Basin and Yellowstone River Basin ecoregions. Three orders of invertebrates (Ephemeroptera, Trichoptera, and Diptera) composed the majority of stomach contents and were responsible for driving the observed patterns. Great Basin trout had higher body conditions (k), and non-native Great Basin trout had higher gut fullness values than Yellowstone River Basin trout, indicating a possible limitation of food in the Yellowstone River Basin. Native fishes were the least abundant and had the lowest body condition in each ecoregion. These findings may indicate a negative impact on native trouts by non-native trouts. We recommend additional monitoring of native and non-native trout diets, regular invertebrate surveys to identify the availability of diet items, and reconsidering stocking efforts that can result in overlap of non-native fishes with native cutthroat trout.

Phenotypically Induced Intraspecific Variation in the Morphological Development of Wetland and Stream Galaxias gollumoides McDowall and Chadderton

The hypothesis that contrasting hydrology induces divergent intraspecific phenotypic plastic responses in non-migratory freshwater fish was investigated. Morphologies of wetland and stream Galaxias gollumoides from South Island, New Zealand, at different stages of ontogeny, were examined. Phenotypic responses were tested for in a 2 × 2 factorial laboratory based controlled reciprocal transplant experiment with flow (current or no current) and source habitat (wetland or stream), as treatments. There was a shift in the overall head morphology of wetland current treatment G. gollumoides away from the wetland no current treatment, and toward the stream current treatment, demonstrating convergence in head morphology in the presence of flow of wetland and stream sourced captive G. gollumoides. Morphologies of captive reared G. gollumoides were also compared to developmental trajectories of morphological characters during the ontogeny of field reared first year, and adult conspecifics. In combination, experimental and field results support the hypothesis, finding habitat hydrology to be the potential mechanism inducing and maintaining intraspecific morphological divergence in G. gollumoides. Recognition of this mechanism inducing morphological divergence between populations also aids the taxonomic description of long genetically recognised lineages of co-members of the Galaxias vulgaris species complex.