Evidence of ecological niche shift in Rhododendron ponticum (L.) in Britain: Hybridization as a possible cause of rapid niche expansion

Fluctuating reproductive isolation and stable ancestry structure in a fine-scaled mosaic of hybridizing Mimulus monkeyflowers

Hybridization among taxa impacts a variety of evolutionary processes from adaptation to extinction. We seek to understand both patterns of hybridization across taxa and the evolutionary and ecological forces driving those patterns. To this end, we use whole-genome low-coverage sequencing of 458 wild-grown and 1565 offspring individuals to characterize the structure, stability, and mating dynamics of admixed populations of Mimulus guttatus and Mimulus nasutus across a decade of sampling. In three streams, admixed genomes are common and a M. nasutus organellar haplotype is fixed in M. guttatus, but new hybridization events are rare. Admixture is strongly unidirectional, but each stream has a unique distribution of ancestry proportions. In one stream, three distinct cohorts of admixed ancestry are spatially structured at ~20-50m resolution and stable across years. Mating system provides almost complete isolation of M. nasutus from both M. guttatus and admixed cohorts, and is a partial barrier between admixed and M. guttatus cohorts. Isolation due to phenology is near-complete between M. guttatus and M. nasutus. Phenological isolation is a strong barrier in some years between admixed and M. guttatus cohorts, but a much weaker barrier in other years, providing a potential bridge for gene flow. These fluctuations are associated with differences in water availability across years, supporting a role for climate in mediating the strength of reproductive isolation. Together, mating system and phenology accurately predict fluctuations in assortative mating across years, which we estimate directly using paired maternal and offspring genotypes. Climate-driven fluctuations in reproductive isolation may promote the longer-term stability of a complex mosaic of hybrid ancestry, preventing either complete isolation or complete collapse of species barriers.

Projecting the global potential distribution of nine Rhododendron Subgenus Hymenanthes species under different climate change scenarios

As one of China's most treasured traditional flowers, Rhododendron Subgen. Hymenanthes is renowned worldwide for its evergreen foliage, vibrant flowers, and significant ornamental, landscaping, and economic value. However, climate change poses a serious threat to its future, leading to population declines and endangerment of some species. Despite the ecological and economic importance of Rhododendron Subgen. Hymenanthes, the future distribution of suitable habitats and the most effective strategies for its conservation and utilization remain unclear. This study employs the MaxEnt model, which is well-known for its reliability in predicting species distribution under changing environmental conditions, to predict the potential global distribution of nine species of Rhododendron Subgen. Hymenanthes. The goal is to provide a solid foundation for their conservation, cultivation management, and breeding. The results indicate that, under future climate scenarios, suitable habitat areas for four species (R. irroratum, R. agastum, R. decorum, and R. arboreum) will significantly decrease, while suitable habitats for the remaining five species (R. delavayi, R. fortunei, R. calophytum, R. simiarum, and R. wardii) will experience slight expansion. Temperature and precipitation are identified as key environmental factors influencing the growth and distribution of these species, affecting their ability to colonize new regions. The migration direction of the expanding regions for all nine species is consistent, with their centroids shifting towards the northwest. These findings provide critical insights for developing targeted conservation strategies, including identifying potential refugia and prioritizing conservation areas under future climate conditions.

Double Trouble for Native Species Under Climate Change: Habitat Loss and Increased Environmental Overlap With Non-Native Species

Climate change and biological invasions are affecting natural ecosystems globally. The effects of these stressors on native species' biogeography have been studied separately, but their combined effects remain overlooked. Here, we develop a framework to assess how climate change influences both the range and niche overlap of native and non-native species using ecological niche models. We hypothesize that species with similar niches will experience both range reductions and increased niche overlap under future climates. We evaluate this using the ongoing invasion of smallmouth bass (Micropterus dolomieu) and northern pike (Esox lucius) on the native habitats of redband trout (Oncorhynchus mykiss) and bull trout (Salvelinus confluentus) in western North America. Future climate conditions will reduce habitat suitability for native and non-native species, but an increased niche overlap might exacerbate negative effects on native fishes. Our framework offers a tool to predict potential species distribution and interactions under climate change, informing adaptive management globally.

Reconstructing the biological invasion of noxious invasive weed Parthenium hysterophorus and invasion risk assessment in China

Invasive alien plants (IAPs) present a severe threat to native ecosystems and biodiversity. Comprehending the potential distribution patterns of these plant invaders and their responses to climate change is essential. Parthenium hysterophorus, native to the Americas, has become an aggressively invasive species since its introduction to China in the 1930s. This study aims to collect and reconstruct the historical occurrence and invasion of P. hysterophorus. Using the optimal MaxEnt model, the potential geographical distributions of P. hysterophorus were predicted based on screened species occurrences and environmental variables under the current and three future scenarios in the 2030s, 2050s, and 2070s (i.e., SSP1-2.6, SSP2-4.5, and SSP5-8.5), and the invasion risk of P. hysterophorus in Chinese cities, croplands, forests, and grasslands was assessed. The results show that: (1) The species initially invaded highly suitable areas and further spread to regions with non-analogous climate conditions. (2) Under the current climatic conditions, the overall potential distribution of P. hysterophorus is characterized by more in the southeast and less in the northwest. Climate variables, including mean annual temperature (bio1), precipitation in the wettest month (bio13), isothermality (bio3), and temperature seasonality (bio4), are the primary factors influencing its distribution. (3) The potential distribution of P. hysterophorus will expand further under future climate scenarios, particularly toward higher latitudes. (4) Forests and crop lands are the areas with the most serious potential invasion risk of P. hysterophorus. Therefore, we suggest that the government should strengthen the monitoring and management of P. hysterophorus to prevent its spread and protect agro-ecosystems and human habitats. Depending on the potential risk areas, measures such as quarantine, removal, and publicity should be taken to mitigate the threat of P. hysterophorus invasion and to raise awareness of P. hysterophorus invasion prevention.

Identifying Areas of Invasion Risk and Changes in the Ecological Niche Occupied by the Coffee Leaf Miner Leucoptera coffeella (Lepidoptera: Lyonetiidae)

Insects of economic importance such as Leucoptera coffeella can cause high defoliation in plants and reduce crop yields. We aimed to identify changes in the ecological niche and potential zones of the invasion. Occurrence records were obtained from databases and bibliography. WorldClim V2.0 bioclimatic layers were used. For the modeling of the potential distribution, the kuenm R package was used by executing the Maxent algorithm. The potential distribution models suggested greatest environmental suitability extends from Europe, South Asia, and Central and South Africa, showing the "tropical and subtropical moist broadleaf forests" as the ecoregion that presents the greatest probability of the presence of L. coffeella. The potential distribution model projected in the invaded area agrees with the known distribution in the region (America), although the results show that it is occupying environmental spaces not present in the area of origin. This species presented a large proportion of the invaded niche that overlaps the native niche and is colonizing new environmental conditions in the invaded area relative to its native distribution (Africa). This information could be used in the planning of coffee crops on the American continent.

Ecological Niche Shifts Affect the Potential Invasive Risk of Rapistrum rugosum (L.) All. in China

Ecological niche is a key concept that links species distributions. Ecological niche shifts are expected to affect the potential invasive risk of alien species. Rapistrum rugosum is an invasive agricultural weed in many countries. Wild populations of R. rugosum have been recorded in China, representing a great threat to the regional crops. Based on distribution records from different regions and relevant environmental variables, the present study predicted the potential distribution and estimated the invasive risk of R. rugosum in China. Ecological niche shifts strongly affected the potential invasive risk of R. rugosum in China. The two most important variables were annual temperature range (Bio7) and mean temperature of the coldest quarter (Bio11). The total suitable habitat for the species covered an area of 287.53 × 10⁴km² and was mainly distributed in Southwest, Southeast, and Central China. Australia, Canada, Brazil, the United States, and Argentina accounted for over 90% of the inspection records of R. rugosum from Chinese entry ports during 2015-2018. The intercepted R. rugosum was frequently mixed in Glycine max (L.) Merr., Hordeum vulgare L., linseed, Triticum aestivum L., and Sorghum bicolor (L.) Moench. Moreover, 80% interceptions were recorded from Tianjin, Guangdong, Nanjing, and Chengdu customs. Climatic conditions do not limit the establishment capability of R. rugosum in China. Our results provide a theoretical reference for the development of monitoring and control measures for this invasive weed.

Landscape Genomics Provides Evidence of Ecotypic Adaptation and a Barrier to Gene Flow at Treeline for the Arctic Foundation Species Eriophorum vaginatum

Global climate change has resulted in geographic range shifts of flora and fauna at a global scale. Extreme environments, like the Arctic, are seeing some of the most pronounced changes. This region covers 14% of the Earth's land area, and while many arctic species are widespread, understanding ecotypic variation at the genomic level will be important for elucidating how range shifts will affect ecological processes. Tussock cottongrass (Eriophorum vaginatum L.) is a foundation species of the moist acidic tundra, whose potential decline due to competition from shrubs may affect ecosystem stability in the Arctic. We used double-digest Restriction Site-Associated DNA sequencing to identify genomic variation in 273 individuals of E. vaginatum from 17 sites along a latitudinal gradient in north central Alaska. These sites have been part of 30 + years of ecological research and are inclusive of a region that was part of the Beringian refugium. The data analyses included genomic population structure, demographic models, and genotype by environment association. Genome-wide SNP investigation revealed environmentally associated variation and population structure across the sampled range of E. vaginatum, including a genetic break between populations north and south of treeline. This structure is likely the result of subrefugial isolation, contemporary isolation by resistance, and adaptation. Forty-five candidate loci were identified with genotype-environment association (GEA) analyses, with most identified genes related to abiotic stress. Our results support a hypothesis of limited gene flow based on spatial and environmental factors for E. vaginatum, which in combination with life history traits could limit range expansion of southern ecotypes northward as the tundra warms. This has implications for lower competitive attributes of northern plants of this foundation species likely resulting in changes in ecosystem productivity.

Molecular evidence and ecological niche modeling reveal an extensive hybrid zone among three Bursera species (section Bullockia)

The genus Bursera, includes ~100 shrub and trees species in tropical dry forests with its center of diversification and endemism in Mexico. Morphologically intermediate individuals have commonly been observed in Mexican Bursera in areas where closely related species coexist. These individuals are assumed to result from interspecific hybridization, but no molecular evidence has supported their hybrid origins. This study aimed to investigate the existence of interspecific hybridization among three Mexican Bursera species (Bullockia section: B. cuneata, B. palmeri and B. bipinnata) from nine populations based on DNA sequences (three nuclear and four chloroplast regions) and ecological niche modeling for three past and two future scenario projections. Results from the only two polymorphic nuclear regions (PEPC, ETS) supported the hybrid origin of morphologically intermediate individuals and revealed that B. cuneata and B. bipinnata are the parental species that are genetically closer to the putative hybrids. Ecological niche modeling accurately predicted the occurrence of putative hybrid populations and showed a potential hybrid zone extending in a larger area (74,000 km2) than previously thought. Paleo-reconstructions showed a potential hybrid zone existing from the Last Glacial Maximum (~ 21 kya) that has increased since the late Holocene to the present. Future ecological niche projections show an increment of suitability of the potential hybrid zone for 2050 and 2070 relative to the present. Hybrid zone changes responded mostly to an increase in elevational ranges. Our study provides the first insight of an extensive hybrid zone among three Mexican Bursera species based on molecular data and ecological niche modeling.

The impact of climate change on western Plethodon salamanders' distribution

AIM

Given that salamanders have experienced large shifts in their distributions over time, we determined how each species of Plethodon in the Pacific Northwest would respond to climate change. We incorporated several greenhouse scenarios both on a species-by-species basis, and also using phylogenetic groups, with the aim to determine the best course of action in managing land area to conserve diversity in this group.

LOCATION

Pacific Northwest of the United States (northern CA, OR, WA, ID, and MT).

MAJOR TAXA STUDIED

Western Plethodon salamanders.

METHODS

Species distribution models were estimated using MaxEnt for the current time period and for several future climate scenarios using bioclimatic data layers. We used several methods to quantify the change in habitat suitability over time from the models. We explored aspects of the climate layers to determine whether we can expect a concerted response to climate change due to similarity in ecological niche or independent responses that could be harder to manage.

RESULTS

The distribution of western Plethodon salamander species is strongly influenced by precipitation and less so by temperature. Species responses to climate change resulted in both increases and decreases in predicted suitable habitat, though most species ranges do not contract, especially when taken as a phylogenetic group.

MAIN CONCLUSIONS

While some established habitats may become more or less climatically suitable, the overall distribution of species in this group is unlikely to be significantly affected. Clades of Plethodon species are unlikely to be in danger of extirpation despite the possibility that individual species may be threatened as a result of limited distributions. Grouping species into lineages with similar geographic ranges can be a viable method of determining conservation needs. More biotic and dispersal information is needed to determine the true impact that changes in climate will have on the distribution of Plethodon species.

The Reliability of Genitalia Morphology to Monitor the Spread of the Invasive Winter Moth (Lepidoptera: Geometridae) in Eastern North America

Winter moth, Operophtera brumata L. (Lepidoptera: Geometridae), causes widespread defoliation in both its native and introduced distributions. Invasive populations of winter moth are currently established in the United States and Canada, and pheromone-baited traps have been widely used to track its spread. Unfortunately, a native species, the Bruce spanworm, O. bruceata (Hulst), and O. bruceata × brumata hybrids respond to the same pheromone, complicating efforts to detect novel winter moth populations. Previously, differences in measurements of a part of the male genitalia called the uncus have been utilized to differentiate the species; however, the accuracy of these measurements has not been quantified using independent data. To establish morphological cutoffs and estimate the accuracy of uncus-based identifications, we compared morphological measurements and molecular identifications based on microsatellite genotyping. We find that there are significant differences in some uncus measurements, and that in general, uncus measurements have low type I error rates (i.e., the probability of having false positives for the presence of winter moth). However, uncus measurements had high type II error rates (i.e., the probability of having false negatives for the presence of winter moth). Our results show that uncus measurements can be useful for performing preliminary identifications to monitor the spread of winter moth, though for accurate monitoring, molecular methods are still required. As such, efforts to study the spread of winter moth into interior portions of North America should utilize a combination of pheromone trapping and uncus measurements, while maintaining vouchers for molecular identification.

Assessing Niche Shifts and Conservatism by Comparing the Native and Post-Invasion Niches of Major Forest Invasive Species

Invasive species experience biotic and abiotic conditions that may (or may not) resemble their native environment. We explored the methodology of determining climatic niches and compared the native and post-invasion niches of four invasive forest pests to determine if these species experienced shifts or changes in their new climatic niches. We used environmental principle components analysis (PCA-env) method to quantify climatic niche shifts, expansions, and temporal changes. Furthermore, we assessed the effect of variable selection in the delineation and comparison of niche space. We found that variable selection influenced the delineation and overlap of each niche, whereas the subset of climatic variables selected from the first two PCA-env axes explained more variance in environmental conditions than the complete set of climatic variables for all four species. Most focal species showed climatic niche shifts in their invasive range and had not yet fully occupied the available niche within the invaded range. Our species varied the proportion of niche overlap between the native and invasive ranges. By comparing native and invasive niches, we can help predict a species’ potential range expansion and invasion potential. Our results can guide monitoring and help inform management of these and other invasive species.

Effect of Invasive Rhododendron ponticum L. on Natural Regeneration and Structure of Fagus orientalis Lipsky Forests in the Black Sea Region

Biological invasions threaten global biodiversity and forest ecosystems; therefore, it is necessary to use appropriate strategies for combating the spread of invasive species. Natural regeneration of eastern beech (Fagus orientalis Lipsky) is considerably limited by an aggressive invasive shrub, pontic rhododendron (Rhododendron ponticum L.), in the Black Sea Region of Turkey. Therefore, the future character of the region’s forests is uncertain. The aim of this research was to evaluate the structure of beech forests with different management regimes of rhododedron and to determine the interaction among tree layer, rhododendron cover, and natural regeneration in Düzce Province using the FieldMap technology. The following variants of forests were compared: without intervention (control) and three and six years after rhododendron clearance. The results showed that tree density ranged between 175–381 trees ha−1 and stand volume between 331–589 m3 ha−1. The horizontal structure of the tree layer was mostly random, and the spatial pattern of natural regeneration was aggregated. Recruit density and height in the beech stands were significantly differentiated due to the influence of presence or absence of invasive rhododendron. Rhododendron cover ranged between 81%–97%, and woody stems amounted to 72,178–86,884 ha−1 in unmanaged forests. Canopy in the overstory did not have a significant effect on the density of regeneration and rhododendron cover. Tree layer had a significant negative influence on natural regeneration within a 4 m radius on the plots without rhododendron. However, on the plots with dense rhododendron cover, tree layer had a positive influence on regeneration within a 1.5 m radius. Natural regeneration density was significantly higher when rhododendron was cleared than the plots without intervention. On the plots without woody clearance, there was an insufficient regeneration (113–619 recruits ha−1); however, they had higher mean height compared to the sites without rhododendron. After three and six years of rhododendron clearance, the numbers of recruits in natural regeneration were 63,981 ha−1 and 105,075 ha−1, respectively. In conclusion, invasive spread of rhododendron was a limiting factor of the prosperous regeneration and tree species diversity, and manual clearance of rhododendron is recommended in managed beech forests of the study region.