Effects of seagrass restoration on coastal fish abundance and diversity

Restoration is accelerating to reverse global declines of key habitats and recover lost ecosystem functions, particularly in coastal ecosystems. However, there is high uncertainty about the long-term capacity of restored ecosystems to provide habitat and increase biodiversity and the degree to which these ecosystem services are mediated by spatial and temporal environmental variability. We addressed these gaps by sampling fishes biannually for 5-7 years (2012-2018) at 16 sites inside and outside a rapidly expanding restored seagrass meadow in coastal Virginia (USA). Despite substantial among-year variation in abundance and species composition, seine catches in restored seagrass beds were consistently larger (6.4 times more fish, p < 0.001) and more speciose (2.6 times greater species richness, p < 0.001; 3.1 times greater Hill-Shannon diversity, p = 0.03) than seine catches in adjacent unvegetated areas. Catches were particularly larger during summer than autumn (p < 0.01). Structural equation modeling revealed that depth and water residence time interacted to control seagrass presence, leading to higher fish abundance and richness in shallow, well-flushed areas that supported seagrass. Together, our results indicate that seagrass restoration yields large and consistent benefits for many coastal fishes, but that restoration and its benefits are sensitive to the dynamic seascapes in which restoration is conducted. Consideration of how seascape-scale environmental variability affects the success of habitat restoration and subsequent ecosystem function will improve restoration outcomes and the provisioning of ecosystem services.

Effects of habitat fragmentation on the recruitment and early post-settlement survival of coral reef fishes

The combined effects of global climate change and local anthropogenic stressors are leading to increasing loss and fragmentation of habitats. On coral reefs, habitat loss has been shown to influence the abundance and composition of associated fish assemblages, yet few studies have considered how habitat fragmentation may influence reef fish populations and assemblages. Herein, we compared survival, growth and recruitment of reef fish among experimental patches composed of six similar sized colonies of finely branching Pocillopora spp. but with different degrees of fragmentation: coral colonies were clumped (unfragmented), divided into two groups (low fragmentation), three groups (moderate fragmentation) or six groups (high fragmentation). Thirty settlement-stage Pomacentrus amboinensis were tagged, released onto each of the experimental patches, and their survival monitored daily for 11 days. Abundance and species richness of all reef fishes that subsequently recruited to the patches were also recorded, and used to analyse recruitment and community composition. There were no detectable differences among fragmentation treatments in the abundance or composition of reef fish assemblages that recruited to the patches, however, fragmentation influenced the survivorship of P. amboinensis. Highest survival of P. amboinensis was recorded on the unfragmented patches (61%.11 days^-1) and highly fragmented habitat patches (54%.11 days^-1) and lowest survival on low and moderate fragmentation treatments (47% and 48%.11 days^-1, respectively). This suggests that there may be multiple competing processes that moderate mortality (e.g., predation) in unfragmented versus highly fragmented habitats, with moderate levels of habitat fragmentation having the greatest influence on the early post-settlement survival of corsal reef fish.

Tropical cyclone impacts on seagrass-associated fishes in a temperate-subtropical estuary

Major storms can alter coastal ecosystems in several direct and indirect ways including habitat destruction, stormwater-related water quality degradation, and organism mortality. From 2010–2020, ten tropical cyclones impacted coastal North Carolina, providing an opportunity to explore ecosystem responses across multiple storms. Using monthly trawl and contemporaneous seagrass surveys conducted in Back Sound, NC, we evaluated how cyclones may affect the nursery role of shallow-water biogenic habitats by examining seagrass-associated fish responses within a temperate-subtropical estuary. We employed a general before-after-control-impact approach using trawls conducted prior (before) and subsequent (after) to storm arrival and years either without (control) or with (impact) storms. We examined whether effects were apparent over short (within ~three weeks of impact) and seasonal (May-October) timescales, as well as if the magnitude of storm-related shifts varied as a function of storm intensity. Our findings suggest that the ability of these shallow-water habitats to support juvenile fishes was not dramatically altered by hurricanes. The resilience exhibited by fishes was likely underpinned by the relative persistence of the seagrass habitat, which appeared principally undamaged by storms based upon review of available–albeit limited seagrass surveys. Increasing cyclone intensity, however, was correlated with greater declines in catch and may potentially underlie the emigration and return rate of fish after cyclones. Whether estuarine fishes will continue to be resilient to acute storm impacts despite chronic environmental degradation and predicted increases major tropical cyclone frequency and intensity remains a pressing question.

Comparing edge and fragmentation effects within seagrass communities: a meta-analysis

Examining community responses to habitat configuration across scales informs basic and applied models of ecosystem function. Responses to patch-scale edge effects (i.e., ecological differences between patch edges and interiors) are hypothesized to underpin the effects of landscape-scale fragmentation (i.e., mosaics of multi-patch habitat and matrix). Conceptually, this appears justifiable because fragmented habitats typically have a greater proportion of edge than continuous habitats. To critically inspect whether patch-scale edge effects translate consistently (i.e., scale up) into patterns observed in fragmented landscapes, we conducted a meta-analysis on community relationships in seagrass ecosystems to synthesize evidence of edge and fragmentation effects on shoot density, faunal densities, and predation rates. We determined effect sizes by calculating log response ratios for responses within patch edges versus interiors to quantify edge effects, and fragmented versus continuous landscapes to quantify fragmentation effects. We found that both edge and fragmentation effects reduced seagrass shoot densities, although the effect of edge was statistically stronger. In contrast, fauna often exhibited higher densities in patch edges, while fragmentation responses varied directionally across taxa. Fish densities trended higher in patch edges and fragmented landscapes. Benthic fishes responded more positively than benthopelagic fishes to edge effects, though neither guild strongly responded to fragmentation. Invertebrate densities increased in patch edges and trended lower in fragmented landscapes; however, these were small effect sizes due to the offsetting responses of two dominant epifaunal guilds: decapods and smaller crustaceans. Edge and fragmentation affected predation similarly, with prey survival trending lower in patch edges and fragmented landscapes. Overall, several similarities suggest that edge effects conform with patterns of community dynamics in fragmented seagrass. However, across all metrics except fish densities, variability in fragmentation effects was twice that of edge effects. Variance patterns combined with generally stronger responses to edge than fragmentation, warrant caution in unilaterally "scaling up" edge effects to describe fragmentation effects. Rather, fragmentation includes additional factors (e.g., matrix effects, patch number, mean patch size, isolation) that may enhance or offset edge effects. Fragmentation and increased edge are syndromes of habitat degradation, thus this analysis informs mechanistic models of community change in altered terrestrial and marine systems.

Joint effects of patch edges and habitat degradation on faunal predation risk in a widespread marine foundation species

Human activities degrade and fragment coastal marine habitats, reducing their structural complexity and making habitat edges a prevalent seascape feature. Though habitat edges frequently are implicated in reduced faunal survival and biodiversity, results of experiments on edge effects have been inconsistent, calling for a mechanistic approach to the study of edges that explicitly includes indirect and interactive effects of habitat alteration at multiple scales across biogeographic gradients. We used an experimental network spanning 17 eelgrass (Zostera marina) sites across the Atlantic and Pacific oceans and the Mediterranean Sea to determine (1) if eelgrass edges consistently increase faunal predation risk, (2) whether edge effects on predation risk are altered by habitat degradation (shoot thinning), and (3) whether variation in the strength of edge effects among sites can be explained by biogeographical variability in covarying eelgrass habitat features. Contrary to expectations, at most sites, predation risk for tethered crustaceans (crabs or shrimps) was lower along patch edges than in patch interiors, regardless of the extent of habitat degradation. However, the extent to which edges reduced predation risk, compared to the patch interior, was correlated with the extent to which edges supported higher eelgrass structural complexity and prey biomass compared to patch interiors. This suggests an indirect component to edge effects in which the impact of edge proximity on predation risk is mediated by the effect of edges on other key biotic factors. Our results suggest that studies on edge effects should consider structural characteristics of patch edges, which may vary geographically, and multiple ways that humans degrade habitats.

The golden-tailed gecko: a disturbance-tolerant species in a fragmenting environment

Abstract ContextIn central Queensland, Australia, the development of a coal-seam gas (CSG) industry is creating additional fragmentation of landscapes consisting of woodland and open forest that are already highly fragmented. AimsTo assess the response to fragmentation of Strophurus taenicauda (golden-tailed gecko). The species is ‘near threatened’ in Queensland. MethodsOccurrence and abundance were examined across three categories of patch size – small (≤10 ha), medium (10–100 ha) and large (≥100 ha) – across three geographic areas of the species’ range. Minimal impact (i.e. sighting only) active searches for geckos were conducted at night. A minimum of three replicate sites of each patch size category was surveyed in each of the three geographic areas. Eleven additional patches (each &lt;4 ha and located in the southern geographic area) were surveyed to investigate how size and spatial isolation of small patches affected occurrence and abundance of S. taenicauda. At all sites a standardised set of 22 habitat variables was collected, and the presence of other species of arboreal gecko was recorded. Key resultsThe species was located across patches of all sizes, including those as small as 1.11 ha. It was also located opportunistically in the matrix among patches and occurred in isolated trees within an urban area. The abundance of another commonly occurring arboreal gecko, Gehyra dubia (dubious dtella), was negatively correlated with S. taenicauda abundance in small patches. The most important habitat variable for S. taenicauda was average basal area of trees. As this increased, especially above 5.7 m2 ha−1, it was more likely to be present. When considering only the small patches, the main factors influencing presence and abundance of S. taenicauda were the average basal area of Callitris glaucophylla (white cypress) and grazing (negligible or absent). ConclusionsStrophurus taenicauda is a species that is tolerant of disturbance and can persist in fragmented habitat, provided the fragments have adequate cover of white cypress. ImplicationsThe species appears to be resilient to the current level of CSG development within its geographic range.

Predation patterns across states of landscape fragmentation can shift with seasonal transitions

Nested scales of habitat heterogeneity may independently or synergistically influence faunal interactions. Fragmentation effects (i.e., the breaking apart of landscapes) and edge effects (i.e., ecological differences between edges and interiors of patches, nested within landscapes) are distinct yet related ecological concepts, linked mathematically by the habitat edge-to-area ratio. Our study quantified the separate and interactive effects of fragmentation and edge on predation using temperate seagrass. To assess how predation and generalized consumption were influenced by fragmentation state (i.e., continuous, fragmented), and proximity to edge (i.e., edges, interiors), we used tethering assays with two prey-items: juvenile crabs, Callinectes sapidus, and "squidpops" (dried squid mantle). We also investigated whether faunal densities (a proxy for consumption potential) and temperature (a proxy for a broad suite of seasonal changes) correlated with predation across landscapes. Results showed fragmentation state affected predation (i.e., crab) mortality, yet edge effects did not. Moreover, the directionality of fragmentation effects shifted across a temperature/seasonal gradient. Predation mortality more than doubled in continuous landscapes amidst temperature increases, surpassing initially higher mortality in fragmented landscapes, which did not systematically vary with temperature. This mortality magnitude "flip" matched spatiotemporal trends in faunal densities between continuous and fragmented meadows. Consumption rates of both prey-items increased alongside temperature and neither demonstrated edge effects. However, crabs showed fragmentation effects not seen with squidpops, suggesting differing foraging strategies used by consumers of these prey-items. We conclude that fragmentation and edge effects have dynamic influences on temperate predator-prey interactions, as faunal favorability of habitat heterogeneity can "flip" temporally.

Implications of macroalgae blooms to the spatial structure of seagrass seascapes: The case of the Anadyomene spp. (Chlorophyta) bloom in Biscayne Bay, Florida

Macroalgal blooms are becoming an increasing problem in coastal regions worldwide and have been associated with a widespread decline of seagrass habitats. It is critical to measure macroalgal bloom (MB) impacts at broad spatial scales since seagrass seascape characteristics can influence feedback processes that regulate the resilience of seagrass ecosystems. We assessed the broad-scale spatial impacts of an MB formed by Anadyomene spp. on the seagrass seascapes in Biscayne Bay (Miami, US) using a multi-scale seascape approach. By integrating field and remote sensing data, our multi-scale approach showed significant reductions in seagrass foliage cover and a seascape structure transformation across the bloom extent. The landscape cover and patch extensiveness declined after the MB peak. Other spatial pattern metrics also showed that the seagrass seascape structure got fragmented. We demonstrated that a persistent MB could transform the structure of seagrass seascapes, hindering the resilience of seagrass habitats.

Trait sensitivities to seagrass fragmentation across spatial scales shape benthic community structure

The structure of local ecological communities is thought to be determined by a series of hierarchical abiotic and biotic filters which select for or against species based on their traits. Many human impacts, like fragmentation, serve to alter environmental conditions across a range of spatial scales and may impact trait-environment interactions. We examined the effects of environmental variation associated with habitat fragmentation of seagrass habitat measured from microhabitat to landscape scales in controlling the taxonomic and trait-based community structure of benthic fauna. We measured patterns in species abundance and biomass of seagrass epifauna and infauna sampled using sediment cores from 86 sites (across 21 meadows) in Back Sound, North Carolina, USA. We related local faunal community structure to environmental variation measured at three spatial scales (microhabitat, patch and landscape). Additionally, we tested the value of species traits in predicting species-specific responses to habitat fragmentation across scales. While univariate measures of faunal communities (i.e. total density, biomass and species richness) were positively related to microhabitat-scale seagrass biomass only, overall community structure was predicted by environmental variation at the microhabitat, patch (i.e. patch size) and landscape (i.e. number of patches, landscape seagrass area) scales. Furthermore, fourth-corner analysis revealed that species traits explained as much variation in organismal densities as species identity. For example, species with planktonic-dispersing larvae and deposit-feeding trophic modes were more abundant in contiguous, high seagrass cover landscapes while suspension feeders favoured more fragmented landscapes. We present quantitative evidence supporting hierarchal models of community assembly which predict that interactions between species traits and environmental variation across scales ultimately drive local community composition. Variable responses of individual traits to multiple environmental variables suggest that community assembly processes that act on species via traits related to dispersal, mobility and trophic mode will be altered under habitat fragmentation. Additionally, with increasing global temperatures, the tropical seagrass Halodule wrightii is predicted to replace the temperate Zostera marina as the dominate seagrass in our study region, therefore potentially favouring species with planktonic-dispersing larva and weakening the strength of environmental control on community assembly.

Historical photographs of captures of recreational fishers indicate overexploitation of nearshore resources at an oceanic island

In this study, we used a historical collection of photographs taken by recreational fishers from 1940 to 2014, at the island of Gran Canaria, to show both a significant decrease in the mean total length of Epinephelus marginatus and a concurrent change in the composition of captures. Before 1980, the mean total length of fish caught and photographed was c. 100 cm, while after 2009 this was typically < 40 cm. Before 1980, the predominant captured species was E. marginatus (an apex predator), but currently the majority of catches are of omnivorous species, in particular the parrotfish, Sparisoma cretense and seabreams Diplodus spp. Overall, integration of these results indicates a qualitative and quantitative variation in captures of recreational fishers, probably as a sign of change in ecological balances and the overfished status of many target species.

Effects of habitat area and spatial configuration on biodiversity in an experimental intertidal community

Isolating the effects of fragmentation per se (i.e., spatial configuration of habitat patches) on species richness is an ongoing challenge as habitat configuration often covaries with the amount of habitat. Consequently, there is a lack of experimental evidence for configurational effects on species richness in the whole landscape. Here, we developed a novel experimental system for testing the independent and interactive effects of habitat area and configuration on tropical intertidal species richness. Our results confirmed the expectation that average species richness would increase monotonically with habitat area. More intriguingly, we found mixed evidence for a non‐monotonic relationship between species richness and fragmentation per se, with the highest richness at intermediate fragmentation configuration, that is, when habitat tiles were placed in a “several‐small” configuration. The effect of habitat configuration was not due to passive sampling (since area was controlled for), variation in total individual abundance, or niche specialization of species to different landscape configurations. We postulate that a combination of processes, including local negative density dependence and dispersal limitation, could give rise to the observed pattern. We emphasize the importance of considering configurational effects on biodiversity at broader spatial scales and for more experimental research to delve into the mechanisms driving the patterns seen here.

Threshold Responses in the Taxonomic and Functional Structure of Fish Assemblages to Land Use and Water Quality: A Case Study from the Taizi River

Biological functional traits help to understand specific stressors that are ignored intaxonomic data analysis. A combination of biological functional traits and taxonomic data ishelpful in determining specific stressors which are of significance for fish conservation and riverbasin management. In the current study, the Taizi River was used as a case study to understand therelationships between the taxonomic and functional structure of fish and land use and waterquality, in addition to determining the thresholds of these stressors. The results showed thattaxonomic structure was significantly affected by the proportion of urban land and specificconductivity levels, while functional metrics were influenced by the proportions of farmland andforest. Threshold indicator taxa analysis found that Phoxinus lagowskii, Barbatula barbatula nuda,Odontobutis obscura, and Cobitis granoei had negative threshold responses along the gradients ofurban developments and specific conductivity. There was a significant change in fish taxonomiccomposition when the proportion of urban land exceeded a threshold of 2.6–3.1%, or specificconductivity exceeded a threshold of 369.5–484.5 μS/cm. Three functional features—habitatpreference, tolerance to disturbances, and spawning traits—showed threshold responses to theproportion of farmland and forest. The abundance of sensitive species should be monitored as partof watershed management, as sensitive species exhibit an earlier and stronger response to stressorsthan other functional metrics. Sensitive species had a positive threshold response to the proportionof forest at 80.1%. These species exhibited a negative threshold response to the proportion offarmland at 13.3%. The results of the current study suggest that the taxonomic and functionalstructure of fish assemblages are affected by land use and water quality. These parameters shouldbe integrated into routine monitoring for fish conservation and river basin management in the TaiziRiver. In addition, corresponding measures for improving river habitat and water quality shouldbe implemented according to the thresholds of these parameters.

Implementing Sustainably Managed Fisheries Using Ecological Risk Assessment and Bowtie Analysis

Determining the effectiveness of a management system to enable fisheries to harvest sustainably is a key challenge. To fully assess the likelihood that a fishery management system will not achieve its sustainability objectives, the assessment needs to include the whole pathway that leads to the consequences for management objectives. A crucial aspect of the pathway is the inclusion of management controls. Effectiveness of these management controls determines whether the effects of human pressures on ecological components and their impacts are reduced to a level that will not impede management achieving their objectives. Ecological risk assessments do not provide sufficient information to make decisions about what to change specifically in a management system to ensure a fishery is sustainably managed. Bowtie analysis (BTA) is a method that logically connects the relationships between management objectives, management controls, threats, potential impacts of threats on the fishery resource and the consequences of those impacts on achieving the management objectives. The combination of bowtie analysis and ecological risk assessment enables managers, scientists and stakeholders to evaluate different management controls and research options in response to risk factors and track the effectiveness of the management system. We applied a three-step method of bowtie analysis stage 1, quantitative ecological risk assessment and bowtie analysis stage 2 to evaluate fisheries management and science. We demonstrate these steps using a case study of a commercially fished species in New South Wales, Australia.

Habitat orientation alters the outcome of interspecific competition: A microcosm study with zooplankton grazers

Habitat orientation has recently been demonstrated to affect the foraging behavior, growth, and production of plankton grazers. Because the orientation effect may vary with species, we hypothesize that habitat orientation may alter interspecific interactions between animal species. We experimentally investigated how habitat orientation (placing cuboid chambers in three orientations with long, medium, and small side as the chamber height) affected the interaction between two common cladoceran species, Daphnia magna and Moina micrura, which competitively exploited green algae of Chlorella pyrenoidosa at two volume scales (64 and 512 ml). Results show that chamber orientation and volume additively affected the behavior and species performance of the grazers. Specifically, both grazer species generally decreased their average swimming velocity, grazing rate (on algal cells), body size, and survival and reproduction rates with increasing chamber height for both chamber volumes and with decreasing chamber volume regardless of chamber orientation. Nevertheless, the decrease magnitude was greater for M. micrura with increasing chamber height but was greater for D. magna with decreasing chamber volume. Correspondingly, when cocultured, the density ratio of D. magna to M. micrura increased with increasing chamber height but decreased with decreasing chamber volume. At the end of the experiment, none of D. magna individuals survived in the small and short (large-based) chambers, and few M. micrura individuals survived in large and tall (small-based) chambers. These results indicate that both habitat orientation and size affect the outcome of interspecific competition between grazer species. We suggest that variation in habitat orientation may improve community coexistence and species diversity in nature.