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For: Li H, Wells SA, Jimenez-Roldan JE, Römer RA, Zhao Y, Sadler PJ, O'Connor PB. Protein flexibility is key to cisplatin crosslinking in calmodulin. Protein Sci 2012;21:1269-79. [PMID: 22733664 PMCID: PMC3631356 DOI: 10.1002/pro.2111] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2012] [Accepted: 06/15/2012] [Indexed: 01/03/2023]
Number Cited by Other Article(s)
1
Nie M, Luo Y, Li H. Utilizing Platinum(II)-Based Cross-Linker and Two-Stage Data Analysis Strategy to Investigate the Allosteric in Glycogen Phosphorylase. Anal Chem 2025;97:3352-3360. [PMID: 39907644 DOI: 10.1021/acs.analchem.4c05286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2025]
2
Nie M, Li H. Innovation in Cross-Linking Mass Spectrometry Workflows: Toward a Comprehensive, Flexible, and Customizable Data Analysis Platform. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023;34:1949-1956. [PMID: 37537999 DOI: 10.1021/jasms.3c00123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
3
Dürvanger Z, Juhász T, Liliom K, Harmat V. Structures of calmodulin-melittin complexes show multiple binding modes lacking classical anchoring interactions. J Biol Chem 2023;299:104596. [PMID: 36906144 PMCID: PMC10140167 DOI: 10.1016/j.jbc.2023.104596] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 03/02/2023] [Accepted: 03/03/2023] [Indexed: 03/11/2023]  Open
4
Simultaneous mass spectrometry analysis of cisplatin with oligonucleotide-peptide mixtures: implications for the mechanism of action. J Biol Inorg Chem 2022;27:239-248. [PMID: 35064831 PMCID: PMC8907109 DOI: 10.1007/s00775-022-01924-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Accepted: 12/30/2021] [Indexed: 11/03/2022]
5
Yaduvanshi S, Ero R, Kumar V. The mechanism of complex formation between calmodulin and voltage gated calcium channels revealed by molecular dynamics. PLoS One 2021;16:e0258112. [PMID: 34610038 PMCID: PMC8491939 DOI: 10.1371/journal.pone.0258112] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 09/18/2021] [Indexed: 11/18/2022]  Open
6
Römer RA, Römer NS, Wallis AK. Flexibility and mobility of SARS-CoV-2-related protein structures. Sci Rep 2021;11:4257. [PMID: 33608565 PMCID: PMC7896093 DOI: 10.1038/s41598-021-82849-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 01/22/2021] [Indexed: 12/22/2022]  Open
7
Wootton CA, Millett AJ, Lopez-Clavijo AF, Chiu CKC, Barrow MP, Clarkson GJ, Sadler PJ, O'Connor PB. Structural analysis of peptides modified with organo-iridium complexes, opportunities from multi-mode fragmentation. Analyst 2019;144:1575-1581. [PMID: 30663751 DOI: 10.1039/c8an02094a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
8
Hagen SE, Liu K, Jin Y, Piersimoni L, Andrews PC, Showalter HD. Synthesis of CID-cleavable protein crosslinking agents containing quaternary amines for structural mass spectrometry. Org Biomol Chem 2018;16:8245-8248. [PMID: 29537042 PMCID: PMC6138586 DOI: 10.1039/c8ob00329g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
9
Messori L, Merlino A. Protein metalation by metal-based drugs: X-ray crystallography and mass spectrometry studies. Chem Commun (Camb) 2018;53:11622-11633. [PMID: 29019481 DOI: 10.1039/c7cc06442j] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
10
Mass spectrometry as a powerful tool to study therapeutic metallodrugs speciation mechanisms: Current frontiers and perspectives. Coord Chem Rev 2017. [DOI: 10.1016/j.ccr.2017.02.012] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
11
Picone D, Donnarumma F, Ferraro G, Gotte G, Fagagnini A, Butera G, Donadelli M, Merlino A. A comparison study on RNase A oligomerization induced by cisplatin, carboplatin and oxaliplatin. J Inorg Biochem 2017;173:105-112. [DOI: 10.1016/j.jinorgbio.2017.05.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Revised: 04/27/2017] [Accepted: 05/07/2017] [Indexed: 01/25/2023]
12
Wootton CA, Lam YPY, Willetts M, van Agthoven MA, Barrow MP, Sadler PJ, O Connor PB. Automatic assignment of metal-containing peptides in proteomic LC-MS and MS/MS data sets. Analyst 2017;142:2029-2037. [PMID: 28513638 DOI: 10.1039/c7an00075h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
13
Liu H, Zhang N, Cui M, Liu Z, Liu S. Mass spectrometry based strategy for studies of binding sites and structural changes of cisplatin binding to myoglobin. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2016;30:2433-2441. [PMID: 27580490 DOI: 10.1002/rcm.7729] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Revised: 08/15/2016] [Accepted: 08/29/2016] [Indexed: 06/06/2023]
14
Römer RA, Wells SA, Emilio Jimenez‐Roldan J, Bhattacharyya M, Vishweshwara S, Freedman RB. The flexibility and dynamics of protein disulfide isomerase. Proteins 2016;84:1776-1785. [PMID: 27616289 PMCID: PMC5111589 DOI: 10.1002/prot.25159] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 07/29/2016] [Accepted: 08/24/2016] [Indexed: 01/01/2023]
15
Floris F, van Agthoven M, Chiron L, Soulby AJ, Wootton CA, Lam YPY, Barrow MP, Delsuc MA, O'Connor PB. 2D FT-ICR MS of Calmodulin: A Top-Down and Bottom-Up Approach. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016;27:1531-1538. [PMID: 27431513 DOI: 10.1007/s13361-016-1431-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 06/02/2016] [Accepted: 06/03/2016] [Indexed: 06/06/2023]
16
Cisplatin binding to proteins: A structural perspective. Coord Chem Rev 2016. [DOI: 10.1016/j.ccr.2016.01.010] [Citation(s) in RCA: 115] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
17
Wells SA, van der Kamp MW, McGeagh JD, Mulholland AJ. Structure and Function in Homodimeric Enzymes: Simulations of Cooperative and Independent Functional Motions. PLoS One 2015;10:e0133372. [PMID: 26241964 PMCID: PMC4524684 DOI: 10.1371/journal.pone.0133372] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 06/25/2015] [Indexed: 12/19/2022]  Open
18
Wells SA, Sartbaeva A. GASP: software for geometric simulations of flexibility in polyhedral and molecular framework structures. MOLECULAR SIMULATION 2015. [DOI: 10.1080/08927022.2015.1032277] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
19
Erskine PT, Fokas A, Muriithi C, Rehman H, Yates LA, Bowyer A, Findlow IS, Hagan R, Werner JM, Miles AJ, Wallace BA, Wells SA, Wood SP, Cooper JB. X-ray, spectroscopic and normal-mode dynamics of calexcitin: structure-function studies of a neuronal calcium-signalling protein. ACTA ACUST UNITED AC 2015;71:615-31. [PMID: 25760610 DOI: 10.1107/s1399004714026704] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2014] [Accepted: 12/04/2014] [Indexed: 01/28/2023]
20
Fokas AS, Cole DJ, Chin AW. Constrained geometric dynamics of the Fenna-Matthews-Olson complex: the role of correlated motion in reducing uncertainty in excitation energy transfer. PHOTOSYNTHESIS RESEARCH 2014;122:275-292. [PMID: 25034014 DOI: 10.1007/s11120-014-0027-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2014] [Accepted: 06/30/2014] [Indexed: 06/03/2023]
21
Li H, Snelling JR, Barrow MP, Scrivens JH, Sadler PJ, O'Connor PB. Mass spectrometric strategies to improve the identification of Pt(II)-modification sites on peptides and proteins. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2014;25:1217-27. [PMID: 24845349 DOI: 10.1007/s13361-014-0877-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 01/17/2014] [Accepted: 02/23/2014] [Indexed: 05/22/2023]
22
Wells SA, Crennell SJ, Danson MJ. Structures of mesophilic and extremophilic citrate synthases reveal rigidity and flexibility for function. Proteins 2014;82:2657-70. [PMID: 24948467 DOI: 10.1002/prot.24630] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2014] [Revised: 05/23/2014] [Accepted: 06/11/2014] [Indexed: 11/07/2022]
23
Prahlad J, Hauser DN, Milkovic NM, Cookson MR, Wilson MA. Use of cysteine-reactive cross-linkers to probe conformational flexibility of human DJ-1 demonstrates that Glu18 mutations are dimers. J Neurochem 2014;130:839-53. [PMID: 24832775 DOI: 10.1111/jnc.12763] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Revised: 04/24/2014] [Accepted: 05/11/2014] [Indexed: 11/29/2022]
24
Belfield WJ, Cole DJ, Martin IL, Payne MC, Chau PL. Constrained geometric simulation of the nicotinic acetylcholine receptor. J Mol Graph Model 2014;52:1-10. [PMID: 24955489 DOI: 10.1016/j.jmgm.2014.05.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2013] [Revised: 05/01/2014] [Accepted: 05/02/2014] [Indexed: 10/25/2022]
25
Merkley ED, Rysavy S, Kahraman A, Hafen RP, Daggett V, Adkins JN. Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances. Protein Sci 2014;23:747-59. [PMID: 24639379 DOI: 10.1002/pro.2458] [Citation(s) in RCA: 225] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2013] [Revised: 03/13/2014] [Accepted: 03/14/2014] [Indexed: 12/24/2022]
26
Pinato O, Musetti C, Sissi C. Pt-based drugs: the spotlight will be on proteins. Metallomics 2014;6:380-95. [PMID: 24510227 DOI: 10.1039/c3mt00357d] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
27
Wells SA. Geometric simulation of flexible motion in proteins. Methods Mol Biol 2014;1084:173-192. [PMID: 24061922 DOI: 10.1007/978-1-62703-658-0_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
28
Zhang N, Cui M, Du Y, Liu Z, Liu S. Exploring the interaction of cisplatin with β2-microglobulin: new insights into a chemotherapeutic drug. RSC Adv 2014. [DOI: 10.1039/c3ra44096f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
29
Qi Y, Liu Z, Li H, Sadler PJ, O'Connor PB. Mapping the protein-binding sites for novel iridium(III) anticancer complexes using electron capture dissociation. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2013;27:2028-2032. [PMID: 23939971 DOI: 10.1002/rcm.6643] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2013] [Revised: 05/29/2013] [Accepted: 06/02/2013] [Indexed: 06/02/2023]
30
High-resolution NMR studies of structure and dynamics of human ERp27 indicate extensive interdomain flexibility. Biochem J 2013;450:321-32. [PMID: 23234573 PMCID: PMC4203274 DOI: 10.1042/bj20121635] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
31
Merkley ED, Baker ES, Crowell KL, Orton DJ, Taverner T, Ansong C, Ibrahim YM, Burnet MC, Cort JR, Anderson GA, Smith RD, Adkins JN. Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2013;24:444-9. [PMID: 23423792 PMCID: PMC3594340 DOI: 10.1007/s13361-012-0565-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Revised: 12/05/2012] [Accepted: 12/09/2012] [Indexed: 05/20/2023]
32
Du Y, Zhang N, Cui M, Liu Z, Liu S. Investigation on the hydrolysis of the anticancer drug cisplatin by Fourier transform ion cyclotron resonance mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2012;26:2832-2836. [PMID: 23124676 DOI: 10.1002/rcm.6408] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
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