• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5081149)   Today's Articles (1156)
For: Sarupria S, Ghosh T, García AE, Garde S. Studying pressure denaturation of a protein by molecular dynamics simulations. Proteins 2010;78:1641-51. [PMID: 20146357 DOI: 10.1002/prot.22680] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Number Cited by Other Article(s)
1
Jia Y, Cocker C, Sampath J. Insights into Protein Unfolding under pH, Temperature, and Shear Using Molecular Dynamics Simulations. Biomacromolecules 2025;26:2095-2105. [PMID: 40130959 DOI: 10.1021/acs.biomac.4c00991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2025]
2
Zeller F, Pracht P, Neudecker T. Using Conformational Sampling to Model Spectral and Structural Changes of Molecules at Elevated Pressures. J Phys Chem A 2025;129:2108-2116. [PMID: 39937466 PMCID: PMC11874042 DOI: 10.1021/acs.jpca.4c08065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2024] [Revised: 01/24/2025] [Accepted: 01/28/2025] [Indexed: 02/13/2025]
3
Li C, Li S, Song Q, Da LT, Xu J. High hydrostatic pressure promotes gene transcription via a cystathionine-β-synthase domain-containing protein in the hyperthermophilic archaeon Pyrococcus yayanosii. Nucleic Acids Res 2025;53:gkae1289. [PMID: 39777464 PMCID: PMC11705074 DOI: 10.1093/nar/gkae1289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Revised: 12/13/2024] [Accepted: 12/24/2024] [Indexed: 01/11/2025]  Open
4
Roy UC, Bandyopadhyay P. Correlation between protein conformations and water structure and thermodynamics at high pressure: A molecular dynamics study of the Bovine Pancreatic Trypsin Inhibitor (BPTI) protein. J Chem Phys 2023;158:095102. [PMID: 36889972 DOI: 10.1063/5.0124837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]  Open
5
Wang Y, Sheng Y, Zhang Y, Geng F, Cao J. Effect of High Pressure/Heating Combination on the Structure and Texture of Chinese Traditional Pig Trotter Stewed with Soy Sauce. Foods 2022;11:foods11152248. [PMID: 35954017 PMCID: PMC9368740 DOI: 10.3390/foods11152248] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/09/2022] [Accepted: 07/17/2022] [Indexed: 02/01/2023]  Open
6
Maiti A, Daschakraborty S. Can Urea and Trimethylamine-N-oxide Prevent the Pressure-Induced Phase Transition of Lipid Membrane? J Phys Chem B 2022;126:1426-1440. [PMID: 35139638 DOI: 10.1021/acs.jpcb.1c08891] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
7
Usman M, Sahar A, Inam‐Ur‐Raheem M, Rahman UU, Sameen A, Aadil RM. Gelatin extraction from fish waste and potential applications in food sector. Int J Food Sci Technol 2022. [DOI: 10.1111/ijfs.15286] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
8
Huang Y, Zhang X, Suo H. Interaction between β-lactoglobulin and EGCG under high-pressure by molecular dynamics simulation. PLoS One 2021;16:e0255866. [PMID: 34932559 PMCID: PMC8691620 DOI: 10.1371/journal.pone.0255866] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 11/29/2021] [Indexed: 11/19/2022]  Open
9
Rai DK, Gillilan RE, Huang Q, Miller R, Ting E, Lazarev A, Tate MW, Gruner SM. High-pressure small-angle X-ray scattering cell for biological solutions and soft materials. J Appl Crystallogr 2021;54:111-122. [PMID: 33841059 PMCID: PMC7941318 DOI: 10.1107/s1600576720014752] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 11/06/2020] [Indexed: 11/10/2022]  Open
10
Gasic AG, Cheung MS. A Tale of Two Desolvation Potentials: An Investigation of Protein Behavior under High Hydrostatic Pressure. J Phys Chem B 2020;124:1619-1627. [DOI: 10.1021/acs.jpcb.9b10734] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
11
Uralcan B, Debenedetti PG. Computational Investigation of the Effect of Pressure on Protein Stability. J Phys Chem Lett 2019;10:1894-1899. [PMID: 30939023 DOI: 10.1021/acs.jpclett.9b00545] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
12
Espinosa YR, Caffarena ER, Grigera JR. The role of hydrophobicity in the cold denaturation of proteins under high pressure: A study on apomyoglobin. J Chem Phys 2019;150:075102. [PMID: 30795674 DOI: 10.1063/1.5080942] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
13
Persson F, Halle B. Compressibility of the protein-water interface. J Chem Phys 2018;148:215102. [DOI: 10.1063/1.5026774] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
14
Uralcan B, Kim SB, Markwalter CE, Prud’homme RK, Debenedetti PG. A Computational Study of the Ionic Liquid-Induced Destabilization of the Miniprotein Trp-Cage. J Phys Chem B 2018;122:5707-5715. [DOI: 10.1021/acs.jpcb.8b01722] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
15
Hölzl C, Kibies P, Imoto S, Frach R, Suladze S, Winter R, Marx D, Horinek D, Kast SM. Design principles for high–pressure force fields: Aqueous TMAO solutions from ambient to kilobar pressures. J Chem Phys 2016;144:144104. [DOI: 10.1063/1.4944991] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
16
Vilseck JZ, Tirado-Rives J, Jorgensen WL. Determination of partial molar volumes from free energy perturbation theory. Phys Chem Chem Phys 2015;17:8407-15. [PMID: 25589343 PMCID: PMC4872387 DOI: 10.1039/c4cp05304d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
17
Ploetz EA, Smith PE. Infinitely dilute partial molar properties of proteins from computer simulation. J Phys Chem B 2014;118:12844-54. [PMID: 25325571 PMCID: PMC4234426 DOI: 10.1021/jp508632h] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
18
Wakai N, Takemura K, Morita T, Kitao A. Mechanism of deep-sea fish α-actin pressure tolerance investigated by molecular dynamics simulations. PLoS One 2014;9:e85852. [PMID: 24465747 PMCID: PMC3896411 DOI: 10.1371/journal.pone.0085852] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2013] [Accepted: 12/03/2013] [Indexed: 12/01/2022]  Open
19
Pal S, Bandyopadhyay S. Thermal unfolding of barstar and the properties of interfacial water around the unfolded forms. J Chem Phys 2013;139:235101. [DOI: 10.1063/1.4844255] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Misplaced helix slows down ultrafast pressure-jump protein folding. Proc Natl Acad Sci U S A 2013;110:8087-92. [PMID: 23620522 DOI: 10.1073/pnas.1219163110] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
21
Using simulations to provide the framework for experimental protein folding studies. Arch Biochem Biophys 2012;531:128-35. [PMID: 23266569 DOI: 10.1016/j.abb.2012.12.015] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2012] [Revised: 12/10/2012] [Accepted: 12/14/2012] [Indexed: 12/27/2022]
22
Perezzan R, Rey A. Simulating protein unfolding under pressure with a coarse-grained model. J Chem Phys 2012;137:185102. [DOI: 10.1063/1.4765057] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Cavities determine the pressure unfolding of proteins. Proc Natl Acad Sci U S A 2012;109:6945-50. [PMID: 22496593 DOI: 10.1073/pnas.1200915109] [Citation(s) in RCA: 308] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA