Targeted deletion of three CYP51s in Fusarium fujikuroi and their different roles in determining sensitivity to 14α-demethylase inhibitor fungicides

Enhanced Resistance to Pokkah Boeng Disease in Sugarcane Through Host-Induced Gene Silencing Targeting FsCYP51 in Fusarium sacchari

Pokkah boeng disease (PBD), a common and highly destructive disease of sugarcane, is mainly caused by Fusarium sacchari. Breeding sugarcane resistant to PBD is challenging due to the limited availability of immune or highly resistant germplasm resources. Host-induced gene silencing (HIGS) based on RNA interference (RNAi) is a promising disease-control method that offers strong disease-targeting ability with low environmental impact. This study found that silencing either three FsCYP51 genes (FsCYP51A, FsCYP51B and FsCYP51C) simultaneous or two of them (FsCYP51A and FsCYP51C) could inhibit the growth, development, and virulence of F. sacchari. Subsequently, we developed CYP51-HIGS transgenic sugarcane lines using gene-gun genetic transformation and obtained seven lines expressing dsFsCYP51. Both the results of laboratory inoculation assays and field trials indicated that all the seven transgenic lines had significant resistance to PBD. Moreover, in the field trials, the yield losses of transgenic sugarcane due to PBD were reduced compared with those of the control. This is the first report using the HIGS strategy to inhibit PBD infection in sugarcane. This breakthrough provides clear guidelines and practical approaches for the future breeding of sugarcane varieties with strong antifungal resistance.

G462S substitution of AaCYP51 confers moderate resistance to tebuconazole in Alternaria alternata

BACKGROUND

Tobacco brown spot (TBS) caused by Alternaria alternata is one of the most common diseases of tobacco in China, resulting in large loss in yield and quality. Demethylation inhibitors (DMIs) such as tebuconazole are commonly used pesticides to control TBS. However, their control effect has shown a downward trend in recent years. In this study, the occurrence and molecular mechanism of resistance to tebuconazole in Alternaria alternata were analyzed.

RESULTS

The resistance of 63 strains of Alternaria alternata to tebuconazole was investigated with the concentration of 5 and 20 μg/mL as the identification standard, and the resistance frequency was as high as 93.65%. It was found that the target mutation from G to S at the 462nd amino acid position of CYP51 was the cause of moderate resistance to tebuconazole in A. alternata. Molecular docking analysis further confirmed that the G462S mutation of AaCYP51 decreased the binding affinity of tebuconazole to CYP51. The artificial AaCYP51-G462S transformants based on wild-sensitive GZA-24 showed resistance to tebuconazole and cross-resistance to metconazole and prothioconazole. In the present investigation, the virulence of the CYP51-G462S mutant was reduced, while mycelial growth, sporulation, and conidial germination did not change in comparison with the progenitor strain GZA-24. In addition, the mutants containing the G462S mutation in AaCYP51 exhibited decreased sensitivity to high osmotic stress stimulated by 1 M NaCl, and the capacity to respond to cell wall- and cytomembrane-damaging agents did not change in the mutants.

CONCLUSION

The G462S substitution of CYP51 is the main factor for the moderate resistance to tebuconazole in A. alternata and mechanisms other than CYP51-target mutation might be involved in tebuconazole lowly resistant isolates. © 2025 Society of Chemical Industry.

Resistance Risk Assessment of Propiconazole in Rhizoctonia solani and its Synergistic Antifungal Mechanism with Kresoxim-methyl

The resistance risk and mechanisms of propiconazole in Rhizoctonia solani remain unclear. In this study, the sensitivity of 159 R. solani isolates to propiconazole was determined, and the EC50 value was 0.2286 μg/mL. Nineteen propiconazole-resistant mutants of R. solani were obtained through fungicide adaptation, and the compound fitness indexes of these propiconazole-resistant mutants were lower than those of their parental isolates. Cross-resistance analysis revealed that there was no cross-resistance between propiconazole and other fungicides, apart from prochloraz. Although no point mutations occurred in the RsCYP51 gene or its promoter regions, the expression levels of RsCYP51 and efflux transporter genes increased substantially in the propiconazole-resistant mutants. Furthermore, a 1:1 synergistic combination of propiconazole and kresoxim-methyl (SCpk(1:1)) could simultaneously cause more severe damage to both cell membrane integrity and mitochondrial function. Field trials demonstrated that SCpk(1:1) achieved over 86% control efficacy against rice sheath blight applied at 120 g a.i./ha.

Enzymatic activity and gene expression changes in the earthworms induced by co-exposure to beta-cypermethrin and triadimefon

Pesticides often exist as complex mixtures in soil environments, yet the toxicity of these combinations has not been thoroughly investigated. In light of this, the current study aimed to assess the enzymatic activity and gene expression responses in the earthworm Eisenia fetida when exposed to a mixture of beta-cypermethrin (BCY) and triadimefon (TRI). The findings revealed that co-exposure to BCY and TRI triggered acute synergistic toxicity in E. fetida, emphasizing the potential risk they pose to soil health. Significant elevations in MDA, Cu/Zn-SOD, and CAT levels were observed across most individual and combined treatments. Additionally, the expression of crt was notably upregulated under most exposure conditions, while the expression levels of tctp and sod were significantly downregulated. These changes suggested the occurrence of oxidative stress and potential carcinogenic effects upon exposure to BCY, TRI, and their combination. Notably, the activities of CAT, caspase-9, and CarE, along with the transcriptional levels of mt, displayed more pronounced variations in response to the pesticide mixture compared to individual exposures. These results indicated that the combined exposure to BCY and TRI intensified oxidative stress, promoted cellular apoptosis, and disrupted detoxification processes more than exposure to either chemical alone. Molecular docking results showed that these two pesticides could interact with CAT, SOD, and GST. These data provided critical insights into the biochemical and molecular toxicity caused by BCY and TRI on E. fetida, offering a deeper understanding of the ecological risks posed by chemical mixtures to soil organisms. This study shed light on the toxicological implications of BCY and TRI co-occurrence and underscored the importance of evaluating the environmental impact of pesticide mixtures to safeguard soil ecosystems.

Genomic Insights into Fusarium verticillioides Diversity: The Genome of Two Clinical Isolates and Their Demethylase Inhibitor Fungicides Susceptibility

Fusarium verticillioides is an important plant pathogen in maize and other cereals that is seldom detected as the cause of human fusariosis. Here, we provide the analysis of the available diversity of F. verticillioides sequenced worldwide and report the first two genome assemblies and annotations (including mitochondrial DNA) of Fusarium verticillioides from clinical settings. Fusarium verticillioides 05-0160 (IUM05-0160) and Fusarium verticillioides 09-1037 (IUM09-1037) strains were obtained from the bone marrow and blood of two immunocompromised patients, respectively. The phylogenomic analysis confirmed the species identity of our two strains. Comparative genomic analyses among the reannotated F. verticillioides genomes (n = 46) did not lead to the identification of unique genes specific to the clinical samples. Two subgroups in the F. verticillioides clade were also identified and confirmed by a mitochondrial diversity study. Clinical strains (n = 4) were positioned in the multigene phylogenetic tree without any correlation between the host and the tree branches, grouping with plant-derived strains. To investigate the existence of a potential fitness advantage of our two clinical strains, we compared demethylase inhibitor fungicides susceptibility against the reference Fusarium verticillioides 7600, showing, on average, lower susceptibility to agricultural and medical-used antifungals. A significant reduction in susceptibility was observed for itraconazole and tetraconazole, which might be explained by structural changes in CYP51A and CYP51C sequences. By providing the first two annotated genomes of F. verticillioides from clinical settings comprehensive of their mitogenomes, this study can serve as a base for exploring the fitness and adaptation capacities of Fusarium verticillioides infecting different kingdoms.

Overexpression of the CcCYP51A and CcCYP51B genes confer Corynespora cassiicola resistance to prochloraz

Cucumber Corynespora leaf spot caused by Corynespora cassiicola is the primary disease responsible for reducing cucumber yield, and prochloraz is the main fungicide used to control C. cassiicola. This study investigated the sensitivity and resistance mechanism of C. cassiicola isolates to prochloraz, and found that C. cassiicola has developed resistance to prochloraz. The prochloraz EC50 values ranged from 0.02 to 2.33 μg/mL, with a mean of 0.436 ± 0.447 μg/mL. In total, 36 of 146 isolates exhibited prochloraz resistance. The resistant isolates had no fitness cost and could not be completely controlled by 50 μg/mL prochloraz on detached leaves. Prochloraz exhibited positive cross-resistance with propiconazole and tebuconazole but not with difenoconazole, carbendazim, trifloxystrobin and pydiflumetofen. The sensitive isolates had significantly lower ergosterol content than the resistant isolates after prochloraz treatment. Compared to sensitive isolates, prochloraz-resistant isolates had no CcCYP51 gene mutation, but the CcCYP51A and CcCYP51B gene expression levels were significantly higher under the treatment of prochloraz. The overexpression of CcCYP51A and CcCYP51B were associated with prochloraz resistance in C. cassiicola.

Functional Plasticity, Redundancy, and Specificity of Lanosterol 14α-Demethylase in Regulating the Sensitivity to DMIs in Calonectria ilicicola

Cytochrome P450 sterol 14α-demethylase (CYP51) is a key enzyme involved in the sterol biosynthesis pathway and serves as a target for sterol demethylation inhibitors (DMIs). In this study, the 3D structures of three CPY51 paralogues from Calonectria ilicicola (C. ilicicola) were first modeled by AlphaFold2, and molecular docking results showed that CiCYP51A, CiCYP51B, or CiCYP51C proteins individually possessed two active pockets that interacted with DMIs. Our results showed that the three paralogues play important roles in development, pathogenicity, and sensitivity to DMI fungicides. Specifically, CiCYP51A primarily contributed to cell wall integrity maintenance and tolerance to abiotic stresses, and CiCYP51B was implicated in sexual reproduction and virulence, while CiCYP51C exerted negative regulatory effects on sterol 14α-demethylase activity within the ergosterol biosynthetic pathway, revealing its genus-specific function in C. ilicicola. These findings provide valuable insights into developing rational strategies for controlling soybean red crown rot caused by C. ilicicola.

Characterization of Fusarium species causing soybean root rot in Heilongjiang, China, and mechanism underlying the differences in sensitivity to DMI fungicides

Soybean root rot is a worldwide soil-borne disease threatening soybean production, causing large losses in soybean yield and quality. Fusarium species are the most detrimental pathogens of soybean root rot worldwide, causing large production losses. Fusarium root rot has been frequently reported in Heilongjiang Province of China, but the predominant Fusarium species and the sensitivity of these pathogens to different fungicides remain unclear. In this study, diseased soybean roots were collected from 14 regions of Heilongjiang province in 2021 and 2022. A total of 144 isolates of Fusarium spp. were isolated and identified as seven distinct species: F. scirpi, F. oxysporum, F. graminearum, F. clavum, F. acuminatum, F. avenaceum, and F. sporotrichioide. F. scirpi and F. oxysporum had high separation frequency and strong pathogenicity. The sensitivity of Fusarium spp. to five different fungicides was determined. Mefentrifluconazole and fludioxonil showed good inhibitory effects, and the sensitivity to pydiflumetofen and phenamacril varied between Fusarium species. In particular, the activity of DMI fungicide prothioconazole was lower than that of mefentrifluconazole. Molecular docking showed that mefentrifluconazole mainly bound to CYP51C, but prothioconazole mainly bound to CYP51B. Furthermore, the sensitivity to prothioconazole only significantly decreased in ΔFgCYP51B mutant, and the sensitivity to mefentrifluconazole changed in ΔFgCYP51C and ΔFgCYP51A mutants. The results demonstrated that the predominant Fusarium species causing soybean root rot in Heilongjiang province were F. scirpi and F. oxysporum and DMI fungicides had differences in binding cavity due to the diversity of CYP51 proteins in Fusarium.

Unintended consequences: Disrupting microbial communities of Nilaparvata lugens with non-target pesticides

Insects are frequently exposed to a range of insecticides that can alter the structure of the commensal microbiome. However, the effects of exposure to non-target pesticides (including non-target insecticides and fungicides) on insect pest microbiomes are still unclear. In the present study, we exposed Nilaparvata lugens to three target insecticides (nitenpyram, pymetrozine, and avermectin), a non-target insecticide (chlorantraniliprole), and two fungicides (propiconazole and tebuconazole), and observed changes in the microbiome's structure and function. Our results showed that both non-target insecticide and fungicides can disrupt the microbiome's structure. Specifically, symbiotic bacteria of N. lugens were more sensitive to non-target insecticide compared to target insecticide, while the symbiotic fungi were more sensitive to fungicides. We also found that the microbiome in the field strain was more stable under pesticides exposure than the laboratory strain (a susceptible strain), and core microbial species g_Pseudomonas, s_Acinetobacter soli, g_Lactobacillus, s_Metarhizium minus, and s_Penicillium citrinum were significantly affected by specifically pesticides. Furthermore, the functions of symbiotic bacteria in nutrient synthesis were predicted to be significantly reduced by non-target insecticide. Our findings contribute to a better understanding of the impact of non-target pesticides on insect microbial communities and highlight the need for scientific and rational use of pesticides.