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For: Troeschel SC, Drepper T, Leggewie C, Streit WR, Jaeger KE. Novel tools for the functional expression of metagenomic DNA. Methods Mol Biol 2011;668:117-39. [PMID: 20830560 DOI: 10.1007/978-1-60761-823-2_8] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Number Cited by Other Article(s)
1
Li Y, Wu Y, Xu X, Liu Y, Li J, Du G, Lv X, Li Y, Liu L. A cross-species inducible system for enhanced protein expression and multiplexed metabolic pathway fine-tuning in bacteria. Nucleic Acids Res 2025;53:gkae1315. [PMID: 39797735 PMCID: PMC11724366 DOI: 10.1093/nar/gkae1315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 12/18/2024] [Accepted: 12/26/2024] [Indexed: 01/13/2025]  Open
2
Sun S, Peng K, Sun S, Wang M, Shao Y, Li L, Xiang J, Sedjoah RCAA, Xin Z. Engineering Modular and Highly Sensitive Cell-Based Biosensors for Aromatic Contaminant Monitoring and High-Throughput Enzyme Screening. ACS Synth Biol 2023;12:877-891. [PMID: 36821745 DOI: 10.1021/acssynbio.3c00036] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
3
Höppner A, Bollinger A, Kobus S, Thies S, Coscolín C, Ferrer M, Jaeger KE, Smits SHJ. Crystal structures of a novel family IV esterase in free and substrate-bound form. FEBS J 2021;288:3570-3584. [PMID: 33342083 DOI: 10.1111/febs.15680] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 11/26/2020] [Accepted: 12/07/2020] [Indexed: 12/19/2022]
4
Bollinger A, Molitor R, Thies S, Koch R, Coscolín C, Ferrer M, Jaeger KE. Organic-Solvent-Tolerant Carboxylic Ester Hydrolases for Organic Synthesis. Appl Environ Microbiol 2020;86:e00106-20. [PMID: 32111588 PMCID: PMC7170478 DOI: 10.1128/aem.00106-20] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 02/20/2020] [Indexed: 02/07/2023]  Open
5
Mongui A, Lozano GL, Handelsman J, Restrepo S, Junca H. Design and validation of a transposon that promotes expression of genes in episomal DNA. J Biotechnol 2020;310:1-5. [PMID: 31954761 DOI: 10.1016/j.jbiotec.2020.01.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2019] [Accepted: 01/15/2020] [Indexed: 01/20/2023]
6
Marine Biosurfactants: Biosynthesis, Structural Diversity and Biotechnological Applications. Mar Drugs 2019;17:md17070408. [PMID: 31323998 PMCID: PMC6669457 DOI: 10.3390/md17070408] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 07/04/2019] [Accepted: 07/07/2019] [Indexed: 11/16/2022]  Open
7
Bioprospecting Reveals Class III ω-Transaminases Converting Bulky Ketones and Environmentally Relevant Polyamines. Appl Environ Microbiol 2019;85:AEM.02404-18. [PMID: 30413473 PMCID: PMC6328768 DOI: 10.1128/aem.02404-18] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2018] [Accepted: 11/04/2018] [Indexed: 12/31/2022]  Open
8
Hage-Hülsmann J, Grünberger A, Thies S, Santiago-Schübel B, Klein AS, Pietruszka J, Binder D, Hilgers F, Domröse A, Drepper T, Kohlheyer D, Jaeger KE, Loeschcke A. Natural biocide cocktails: Combinatorial antibiotic effects of prodigiosin and biosurfactants. PLoS One 2018;13:e0200940. [PMID: 30024935 PMCID: PMC6053208 DOI: 10.1371/journal.pone.0200940] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2018] [Accepted: 07/05/2018] [Indexed: 11/18/2022]  Open
9
Yang S, Liu Q, Zhang Y, Du G, Chen J, Kang Z. Construction and Characterization of Broad-Spectrum Promoters for Synthetic Biology. ACS Synth Biol 2018;7:287-291. [PMID: 29061047 DOI: 10.1021/acssynbio.7b00258] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
10
Kinfu BM, Jahnke M, Janus M, Besirlioglu V, Roggenbuck M, Meurer R, Vojcic L, Borchert M, Schwaneberg U, Chow J, Streit WR. Recombinant RNA Polymerase from Geobacillus sp. GHH01 as tool for rapid generation of metagenomic RNAs using in vitro technologies. Biotechnol Bioeng 2017;114:2739-2752. [DOI: 10.1002/bit.26436] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Revised: 08/09/2017] [Accepted: 08/21/2017] [Indexed: 01/18/2023]
11
Katzke N, Knapp A, Loeschcke A, Drepper T, Jaeger KE. Novel Tools for the Functional Expression of Metagenomic DNA. Methods Mol Biol 2017;1539:159-196. [PMID: 27900689 DOI: 10.1007/978-1-4939-6691-2_10] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
12
Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community. Sci Rep 2016;6:27035. [PMID: 27271534 PMCID: PMC4897644 DOI: 10.1038/srep27035] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Accepted: 05/04/2016] [Indexed: 12/02/2022]  Open
13
Beuker J, Steier A, Wittgens A, Rosenau F, Henkel M, Hausmann R. Integrated foam fractionation for heterologous rhamnolipid production with recombinant Pseudomonas putida in a bioreactor. AMB Express 2016;6:11. [PMID: 26860613 PMCID: PMC4747948 DOI: 10.1186/s13568-016-0183-2] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 01/29/2016] [Indexed: 11/10/2022]  Open
14
Lam KN, Cheng J, Engel K, Neufeld JD, Charles TC. Current and future resources for functional metagenomics. Front Microbiol 2015;6:1196. [PMID: 26579102 PMCID: PMC4625089 DOI: 10.3389/fmicb.2015.01196] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 10/14/2015] [Indexed: 11/18/2022]  Open
15
Laukens D, Brinkman BM, Raes J, De Vos M, Vandenabeele P. Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. FEMS Microbiol Rev 2015;40:117-32. [PMID: 26323480 PMCID: PMC4703068 DOI: 10.1093/femsre/fuv036] [Citation(s) in RCA: 277] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/30/2015] [Indexed: 02/07/2023]  Open
16
Lam KN, Charles TC. Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries. MICROBIOME 2015;3:22. [PMID: 26056565 PMCID: PMC4459075 DOI: 10.1186/s40168-015-0086-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Accepted: 05/01/2015] [Indexed: 05/24/2023]
17
Morris LS, Marchesi JR. Current functional metagenomic approaches only expand the existing protease sequence space, but does not presently add any novelty to it. Curr Microbiol 2014;70:19-26. [PMID: 25141963 DOI: 10.1007/s00284-014-0677-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 07/03/2014] [Indexed: 01/14/2023]
18
Liebl W, Angelov A, Juergensen J, Chow J, Loeschcke A, Drepper T, Classen T, Pietruszka J, Ehrenreich A, Streit WR, Jaeger KE. Alternative hosts for functional (meta)genome analysis. Appl Microbiol Biotechnol 2014;98:8099-109. [PMID: 25091044 DOI: 10.1007/s00253-014-5961-7] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Revised: 07/14/2014] [Accepted: 07/15/2014] [Indexed: 11/25/2022]
19
Xing MN, Zhang XZ, Huang H. Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis. Biotechnol Adv 2012;30:920-9. [DOI: 10.1016/j.biotechadv.2012.01.021] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
20
Troeschel SC, Thies S, Link O, Real CI, Knops K, Wilhelm S, Rosenau F, Jaeger KE. Novel broad host range shuttle vectors for expression in Escherichia coli, Bacillus subtilis and Pseudomonas putida. J Biotechnol 2012;161:71-9. [PMID: 22440389 DOI: 10.1016/j.jbiotec.2012.02.020] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Revised: 02/25/2012] [Accepted: 02/29/2012] [Indexed: 11/18/2022]
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