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Affiliation(s)
- María E. Elguero
- Facultad de Farmacia y Bioquímica, Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Nanobiotecnología (NANOBIOTEC), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Clara B. Nudel
- Facultad de Farmacia y Bioquímica, Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Nanobiotecnología (NANOBIOTEC), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Alejandro D. Nusblat
- Facultad de Farmacia y Bioquímica, Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Nanobiotecnología (NANOBIOTEC), Universidad de Buenos Aires, Buenos Aires, Argentina
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De Luca BM, Nudel CB, Gonzalez RH, Nusblat AD. Introducing the concept of biocatalysis in the classroom: The conversion of cholesterol to provitamin D 3. BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION : A BIMONTHLY PUBLICATION OF THE INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 2017; 45:105-114. [PMID: 27666582 DOI: 10.1002/bmb.20995] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Revised: 06/28/2016] [Accepted: 07/13/2016] [Indexed: 06/06/2023]
Abstract
Biocatalysis is a fundamental concept in biotechnology. The topic integrates knowledge of several disciplines; therefore, it was included in the course "design and optimization of biological systems" which is offered in the biochemistry curricula. We selected the ciliate tetrahymena as an example of a eukaryotic system with potential for the biotransformation of sterol metabolites of industrial interest; in particular, we focused on the conversion of cholesterol to provitamin D3. The students work with wild type and recombinant strains and learn how sterol pathways could be modified to obtain diverse sterol moieties. During the course the students identify and measure the concentration of sterols. They also search for related genes by bioinformatic analysis. Additionally, the students compare biotransformation rates, growing the ciliate in plate and in a bioreactor. Finally, they use fluorescence microscopy to localize an enzyme involved in biotransformation. The last day each team makes an oral presentation, explaining the results obtained and responds to a series of key questions posed by the teachers, which determine the final mark. In our experience, this course enables undergraduate students to become acquainted with the principles of biocatalysis as well as with standard and modern techniques, through a simple and robust laboratory exercise, using a biological system for the conversion of valuable pharmaceutical moieties. © 2016 by The International Union of Biochemistry and Molecular Biology, 45(2):105-114, 2017.
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Affiliation(s)
- Belén M De Luca
- Cátedra de Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, Buenos Aires, Argentina, C1113AAD
| | - Clara B Nudel
- Cátedra de Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, Buenos Aires, Argentina, C1113AAD
| | - Rodrigo H Gonzalez
- Cátedra de Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, Buenos Aires, Argentina, C1113AAD
| | - Alejandro D Nusblat
- Cátedra de Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, Buenos Aires, Argentina, C1113AAD
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Guiraud P, Bonnet JL, Boumendjel A, Kadri-Dakir M, Dusser M, Bohatier J, Steiman R. Involvement of Tetrahymena pyriformis and selected fungi in the elimination of anthracene, and toxicity assessment of the biotransformation products. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2008; 69:296-305. [PMID: 17257678 DOI: 10.1016/j.ecoenv.2006.11.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2005] [Revised: 08/18/2006] [Accepted: 11/10/2006] [Indexed: 05/13/2023]
Abstract
Anthracene (AC) is a non-mutagenic and non-carcinogenic, low-molecular-weight polycyclic aromatic hydrocarbon present in the environment. Its toxicity can be dramatically increased after solar-light exposure. Biotransformation capacities of AC by Tetrahymena pyriformis and a selection of eight micromycetes were studied, and the ability of these microorganisms to detoxify the polluted ecosystems was assessed. We showed that T. pyriformis was able to accumulate high amounts of AC without any transformation. In contrast, the fungi Cunninghamella elegans, Absidia fusca, Absidia cylindrospora, Rhodotorula glutinis, and Aspergillus terreus were able to transform AC with a high efficiency. Cytotoxicity assays conducted on HeLa cells and T. pyriformis showed that crude extract from A. fusca culture medium obtained after AC biotransformation was not toxic. For A. fusca and A. cylindrospora, 1-4 dihydroxyanthraquinone was shown to be the major product during the biotransformation process. This compound seemed to be a dead-end metabolite at least for the Absidia strains. The cytotoxicity of 1-4 dihydroxyanthraquinone was higher than that of AC to T. pyriformis but lower to HeLa cells. On the whole our results showed that the microorganisms studied were all able to decontaminate an AC-polluted ecosystem, either by accumulating or transforming the compound. A possible detoxification process resulting from AC biotransformation can be considered only using the human cell model.
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Affiliation(s)
- P Guiraud
- Laboratoire ORSOX (EA-3776, CEA-LRC 8M), Université Joseph Fourier, UFR de Pharmacie, Domaine de La Merci, 38700 La Tronche, France.
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Noseda DG, Gentili HG, Nani ML, Nusblat A, Tiedtke A, Florin-Christensen J, Nudel CB. A bioreactor model system specifically designed for Tetrahymena growth and cholesterol removal from milk. Appl Microbiol Biotechnol 2007; 75:515-20. [PMID: 17294184 DOI: 10.1007/s00253-007-0843-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2006] [Revised: 01/09/2007] [Accepted: 01/10/2007] [Indexed: 11/28/2022]
Abstract
This work describes the configuration and operation of a bioreactor system especially designed for Tetrahymena cultivation and its use for milk improvement, particularly cholesterol elimination by the action of this cell. An advantage of the proposed method is the re-use of the growth medium; thus, the medium is used twice to provide two batches of Tetrahymena biomass without the need of further inoculation. This makes the procedure of producing the cell biomass faster and more economical. Cells are concentrated in the culture vessels by sedimentation at room temperature and then transferred to milk suspensions, where they can further grow for at least one generation with the benefit of reducing steeply cholesterol level. Milk treated according to this process is separated from the biomass by centrifugation. Under these conditions, less than 5% of the cells remain in the milk, and cholesterol elimination amounts to 75 +/- 10% of that initially present. No changes in sensorial properties of the milk, such as clotting or butyric odor, were observed as a result of this treatment. In addition, the bioreactor allows the aseptic recovery of the spent growth medium, which contains diverse enzymes of interest, and the cell pellets, to exploit particular lipids like phosphonolipids, abundant poly-unsaturated fatty acids and co-enzyme Q(8).
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Affiliation(s)
- D G Noseda
- Laboratorio de Desarrollo e Investigaciones Aplicadas de Medipharma S.A., 1056, Buenos Aires, Argentina.
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Orias E. Mapping the germ-line and somatic genomes of a ciliated protozoan, Tetrahymena thermophila. Genome Res 1998; 8:91-9. [PMID: 9477337 DOI: 10.1101/gr.8.2.91] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Ciliates are among the very few eukaryotes in which the powers of molecular biology, conventional genetics, and microbial methodology can be synergistically combined. Because ciliates also are distant relatives of vertebrates, fungi, and plants, the sequencing of a ciliate genome will be of import to our understanding of eukaryotic biology. Tetrahymena thermophila is the only ciliate in which a systematic genetic mapping of DNA polymorphisms has begun. Tetrahymena has many biological features that make it a specially or uniquely useful experimental system for fundamental research in cell and molecular biology and for biotechnological applications. A key factor in the usefulness of Tetrahymena is the speed, facility, and versatility with which it can be cultivated under a wide range of nutrient conditions, temperature, and scale. This article describes the progress made in genetically and physically mapping the genomes of T. thermophila: the micronuclear (germ-line) genome, which is not transcriptionally expressed, and the macronuclear (somatic) fragmented genome, which is actively expressed and determines the cell's phenotype.
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Affiliation(s)
- E Orias
- Department of Molecular, Cellular, and Developmental Biology, University of California at Santa Barbara (UCSB), Santa Barbara, California 93106, USA.
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Niknahad H, O'Brien PJ. Cytotoxicity induced by N-methyl-N'-nitro-N-nitrosoguanidine may involve S-nitrosyl glutathione and nitric oxide. Xenobiotica 1995; 25:91-101. [PMID: 7604611 DOI: 10.3109/00498259509061836] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
1. The mutagenic/carcinogenic activity of N-methyl-N'-nitro-N- nitrosoguanidine (MNNG) is generally thought to involve direct methylation of DNA guanine by methyldiazohydroxide, an alkylating hydrolysis product. The molecular cytotoxic mechanism of MNNG was studied in order to determine if and how MNNG is metabolically activated. 2. MNNG was rapidly metabolized by glutathione (GSH) and GSH transferase in rat hepatocyte to form S-nitrosylglutathione (GNSO). After GSH depletion, mitochondrial respiration inhibition, ATP depletion and lipid peroxidation ensued before cell death occurred. However, depleting hepatocyte GSH beforehand prevented MNNG cytotoxicity, lipid peroxidation and the inhibition of mitochondrial respiration, suggesting that GSNO initiated the cytotoxic process. 3. The iron chelator desferoxamine or various antioxidants prevented both cytotoxicity and lipid peroxidation, even when added after MNNG metabolism, suggesting a free radical-mediated mechanism of cytotoxicity. The P450 inhibitors phenylimidazole, metyrapone and imidazole also prevented MNNG cytotoxicity. 4. Similar results were previously obtained for butyl nitrite induced hepatocyte cytotoxicity, which suggest that MNNG cytotoxicity can be attributed to metabolic activation to GSNO rather than direct methylation of macromolecules.
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Affiliation(s)
- H Niknahad
- Faculty of Pharmacy, University of Toronto, Ontario, Canada
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Bamdad M, Grolière CA, Dupy-Blanc J, Cuer A, David L, Tabet JC. Microbial conversion of lonophorous antibiotic nigericin by the ciliate Tetrahymena pyriformis. Eur J Protistol 1993. [DOI: 10.1016/s0932-4739(11)80403-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Affiliation(s)
- M J Penninckx
- Unité de Physiologie et Ecologie Microbiennes, Faculté des Sciences, Université libre de Bruxelles, Instut Pasteur Brabant, Belgium
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Servent D, Ducrocq C, Henry Y, Guissani A, Lenfant M. Nitroglycerin metabolism by Phanerochaete chrysosporium: evidence for nitric oxide and nitrite formation. BIOCHIMICA ET BIOPHYSICA ACTA 1991; 1074:320-5. [PMID: 1648402 DOI: 10.1016/0304-4165(91)90170-l] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We have demonstrated that a filamentous fungus Phanerochaete chrysosporium converts glyceryl trinitrate (GTN) into its di- and mononitrate derivatives concurrently with the formation of nitric oxide detected by electron paramagnetic resonance (EPR), and the formation of nitrite. The metabolisms of nitrite and nitrate by the fungus are evaluated and taken into account when considering GTN degradation. Lack of evidence for nitrate formation from GTN suggests that an esterase-type activity is not involved. Furthermore, the kinetics of appearance of the hemoprotein-NO and non-heme protein-NO (FeS-NO) complexes indicate that an enzymatic process producing NO directly from GTN may be involved concurrently with a glutathione transferase-like system.
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Affiliation(s)
- D Servent
- Institut de Chimie des Substances Naturelles, CNRS, Gif/Yvette, France
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Affiliation(s)
- P Stoss
- Chemical Research and Development, Heinrich Mack Nachf, Chemical Pharmaceutical Company, Illertissen, Germany
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Isosorbide dinitrate bioconversion by Beauveria strains: implication of glutathione transferase levels. Appl Microbiol Biotechnol 1989. [DOI: 10.1007/bf00262458] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Clark AG. The comparative enzymology of the glutathione S-transferases from non-vertebrate organisms. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. B, COMPARATIVE BIOCHEMISTRY 1989; 92:419-46. [PMID: 2650986 DOI: 10.1016/0305-0491(89)90114-4] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- A G Clark
- Biochemistry Department, Victoria University of Wellington, New Zealand
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