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Caldon M, Mutti G, Mondanaro A, Imai H, Shotake T, Oteo Garcia G, Belay G, Morata J, Trotta JR, Montinaro F, Gippoliti S, Capelli C. Gelada genomes highlight events of gene flow, hybridisation and local adaptation that track past climatic changes. Mol Ecol 2024; 33:e17514. [PMID: 39206888 DOI: 10.1111/mec.17514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 06/28/2024] [Accepted: 08/13/2024] [Indexed: 09/04/2024]
Abstract
Theropithecus gelada, the last surviving species of this genus, occupy a unique and highly specialised ecological niche in the Ethiopian highlands. A subdivision into three geographically defined populations (Northern, Central and Southern) has been tentatively proposed for this species on the basis of genetic analyses, but genomic data have been investigated only for two of these groups (Northern and Central). Here we combined newly generated whole genome sequences of individuals sampled from the population living south of the East Africa Great Rift Valley with available data from the other two gelada populations to reconstruct the evolutionary history of the species. Integrating genomic and paleoclimatic data we found that gene-flow across populations and with Papio species tracked past climate changes. The isolation and climatic conditions experienced by Southern geladas during the Holocene shaped local diversity and generated diet-related genomic signatures.
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Affiliation(s)
- Matteo Caldon
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | - Giacomo Mutti
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
- Barcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain
- Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain
| | | | - Hiroo Imai
- Center for the Evolutionary Origins of Human Behavior, Kyoto University, Inuyama, Aichi, Japan
| | | | - Gonzalo Oteo Garcia
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
- Centre for Palaeogenetics, Stockholm, Sweden
- Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden
| | - Gurja Belay
- Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Jordi Morata
- Centre Nacional d'Anàlisi Genòmica, Barcelona, Spain
| | | | - Francesco Montinaro
- Department of Biology-Genetics, University of Bari, Bari, Italy
- Institute of Genomics, University of Tartu, Tartu, Estonia
| | - Spartaco Gippoliti
- IUCN/SSC Primate Specialist Group, Rome, Italy
- Società Italiana per la Storia Della Fauna "G. Altobello", Rome, Italy
| | - Cristian Capelli
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
- Department of Biology, University of Oxford, Oxford, UK
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2
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Abate D, Girma Z. Population structure and distribution of geladas ( Theropithicus gelada, Ruppell 1835) in Kotu forest, Northern Ethiopia. Ecol Evol 2023; 13:e10206. [PMID: 37396027 PMCID: PMC10307796 DOI: 10.1002/ece3.10206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 05/06/2023] [Accepted: 05/22/2023] [Indexed: 07/04/2023] Open
Abstract
Endemic gelada populations outside protected areas are less investigated, and population census data are not available. As a result, a study was conducted to investigate the population size, structure, and distribution of geladas in Kotu forest and associated grasslands, in northern Ethiopia. The study area was stratified into five dominant habitat types namely, grassland, wooded grassland, plantation forest, natural forest, and bushland based on dominant vegetation type. Each habitat type was further divided into blocks, and a total counting technique was used to count the individuals of gelada. The total mean population size of gelada in Kotu forest was 229 ± 6.11. The mean ratio of male to female was 1:1.178. The gelada age composition comprised is as follows: 113 (49.34%) adults, 77 (33.62%) sub-adults, and 39 (17.03%) juveniles. The mean number of group one-male unit ranged from 1.5 ± 0.2 in the plantation forest to 4.5 ± 0.7 in the grassland habitat. On the other hand, all-male unit social system group was recorded only from grassland (1.5) and plantation forest (1) habitats. The average band size (number of individuals per band) was 45.0 ± 2.53. The largest number of geladas was recorded from grassland habitat 68 (29.87%), and the lowest was recorded from plantation forest habitat 34 (14.74%). Even though, the sex ratio was female biased, the proportion of juveniles to other age classes was very low compared with geladas in relatively well-protected areas, indicating negative consequences for the future viability of the gelada populations in the area. Geladas were widely distributed over open grassland habitat. Therefore, for sustainable conservation of the geladas in the area, there is a need for integrated management of the area with special attention on the conservation of the grassland habitat.
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Affiliation(s)
- Degu Abate
- Department of Natural Resource ManagementMekdela Amba UniversityTuluawliyaEthiopia
| | - Zerihun Girma
- Wondo Genet College of Forestry and Natural ResourceHawassa UniversityWondo GentEthiopia
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Trede F, Lemkul A, Atickem A, Beehner JC, Bergman TJ, Burke R, Fashing PJ, Knauf S, Mekonnen A, Moges A, Nguyen N, Roos C, Zinner D. Geographic distribution of microsatellite alleles in geladas (Primates, Cercopithecidae): Evidence for three evolutionary units. ZOOL SCR 2020. [DOI: 10.1111/zsc.12451] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Franziska Trede
- Cognitive Ethology Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Primate Genetics Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
| | - Anna Lemkul
- Cognitive Ethology Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
| | - Anagaw Atickem
- Cognitive Ethology Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Primate Genetics Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Department of Zoological Sciences Addis Ababa University Addis Ababa Ethiopia
| | - Jacinta C. Beehner
- Department of Anthropology University of Michigan Ann Arbor MI USA
- Department of Psychology University of Michigan Ann Arbor MI USA
| | - Thore J. Bergman
- Department of Psychology University of Michigan Ann Arbor MI USA
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor MI USA
| | - Ryan Burke
- Long‐Term Ecology Laboratory Department of Zoology University of Oxford Oxford UK
| | - Peter J. Fashing
- Department of Anthropology & Environmental Studies Program California State University Fullerton Fullerton CA USA
- Centre for Ecological and Evolutionary Synthesis (CEES) Department of Biosciences University of Oslo Oslo Norway
| | - Sascha Knauf
- Work Group Neglected Tropical Diseases, Infection Biology Unit German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Department for Animal Sciences Georg‐August‐University Göttingen Germany
| | - Addisu Mekonnen
- Centre for Ecological and Evolutionary Synthesis (CEES) Department of Biosciences University of Oslo Oslo Norway
- Department of Biology College of Natural Sciences Bahir Dar University Bahir Dar Ethiopia
| | - Amera Moges
- Department of Biology College of Natural Sciences Bahir Dar University Bahir Dar Ethiopia
| | - Nga Nguyen
- Department of Anthropology & Environmental Studies Program California State University Fullerton Fullerton CA USA
- Centre for Ecological and Evolutionary Synthesis (CEES) Department of Biosciences University of Oslo Oslo Norway
| | - Christian Roos
- Primate Genetics Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Gene Bank of Primates German Primate Center Leibniz Institute for Primate Research Göttingen Germany
| | - Dietmar Zinner
- Cognitive Ethology Laboratory German Primate Center Leibniz Institute for Primate Research Göttingen Germany
- Leibniz ScienceCampus Primate Cognition Göttingen Germany
- Department for Primate Cognition Georg‐August‐University Göttingen Germany
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4
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Activity Budget and Feeding Ecology of Geladas ( Theropithecus gelada obscurus) around Abogedam Church West of Debre Berhan Town, Ethiopia. ScientificWorldJournal 2020; 2020:9829834. [PMID: 32952457 PMCID: PMC7482005 DOI: 10.1155/2020/9829834] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 08/07/2020] [Indexed: 11/17/2022] Open
Abstract
Geladas are the most distinctive of Ethiopian endemic mammals, representing the last extant species of primate genus that have a very restricted distribution in the northern Ethiopian plateau. The activity budget and feeding ecology of geladas (Theropithecus gelada obscurus) were studied around Abogedam Church, Ethiopia, from May to October 2014, encompassing dry and wet seasons. The scan sampling method was applied to collect behavioural data on the identified band. Activity scans were collected at 15-minute intervals for up to five minutes duration from 0700 to 1730 h. The activity recorded for each individual was the first activity that lasts for five seconds. During each scan, individuals were recorded as performing activities: feeding, moving, resting, playing, aggression, grooming, sexual activity, and others. On average, geladas devoted 57.19% feeding, 14.82% resting, 14.92% moving, 4.83% playing, 2.53% aggression, 4.14% grooming, 1.23% sexual activity, and 0.34% other activities such as vocalization, defecation, and urination. Forty-one plant species were consumed by geladas that belonged to 18 families of which 53.66% were grasses. This study provides basic information on further studies and motivates conservationists to plan the management of unprotected areas at the vicinity of agricultural lands where such endemic animals dwell.
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Zinner D, Atickem A, Beehner JC, Bekele A, Bergman TJ, Burke R, Dolotovskaya S, Fashing PJ, Gippoliti S, Knauf S, Knauf Y, Mekonnen A, Moges A, Nguyen N, Stenseth NC, Roos C. Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada). PLoS One 2018; 13:e0202303. [PMID: 30138418 PMCID: PMC6107150 DOI: 10.1371/journal.pone.0202303] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 07/31/2018] [Indexed: 11/18/2022] Open
Abstract
The large-bodied, terrestrial primates in the tribe Papionini are among the most intensely studied animals in the world, yet for some members of this tribe we know comparatively little about their evolutionary history and phylogeography. Geladas (Theropithecus gelada Rüppell, 1835), endemic primates of the Ethiopian highlands, are largely unstudied both in genetic diversity and intrageneric phylogeny. Currently, a northern and central subspecies and one isolated southern population are recognized, of which the central is classified as Least Concern, the northern as Vulnerable, and the southern is not yet assessed. The distribution and taxonomy of the subspecies remain poorly defined. Here, we estimate the mitochondrial DNA (mtDNA) diversity and phylogenetic relationships among gelada mtDNA lineages based on samples across the entire species range. We analysed 1.7 kb-long sequences of the mtDNA genome, spanning the cytochrome b gene and the hypervariable region I of the D-loop, derived from 162 faecal samples. We detected five major haplogroups or clades (south, central-1, central-2, north-1, north-2) which diverged between 0.67 and 0.43 million years ago, thus suggesting a rapid radiation, resulting in largely unresolved intrageneric phylogenetic relationships. Both, the northern and central demes contain two similarly valid haplogroups, each with little or no geographic segregation among respective haplogroups. Effective population sizes of the northern and central demes decreased during and after the last glacial maximum but remained stable for the southern deme, although on a very low level. The distribution of haplogroups within the geographic ranges of the putative gelada subspecies indicates that mtDNA sequence information does not allow reliable taxonomic inferences and thus is not sufficient for solving the taxonomic rank of the three demic populations, with the possible exception of the southern population. Nevertheless, due to the genetic differences all three populations deserve conservation efforts, in particular the smallest southern population.
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Affiliation(s)
- Dietmar Zinner
- Cognitive Ethology Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- * E-mail: (DZ); (CR)
| | - Anagaw Atickem
- Cognitive Ethology Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Jacinta C. Beehner
- Department of Psychology, University of Michigan, Ann Arbor, MI, United States of America
- Department of Anthropology, University of Michigan, Ann Arbor, MI, United States of America
| | - Afework Bekele
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Thore J. Bergman
- Department of Psychology, University of Michigan, Ann Arbor, MI, United States of America
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, United States of America
| | - Ryan Burke
- Long-Term Ecology Laboratory, Department of Zoology, University of Oxford, Oxford, United Kingdom
| | - Sofya Dolotovskaya
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Peter J. Fashing
- Department of Anthropology & Environmental Studies Program, California State University Fullerton, Fullerton, CA, United States of America
| | - Spartaco Gippoliti
- Società Italiana per la Storia della Fauna “G. Altobello”, Viale Liegi 48A, Roma, Italy
| | - Sascha Knauf
- Work Group Neglected Tropical Diseases, Infection Biology Unit, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Yvonne Knauf
- Work Group Neglected Tropical Diseases, Infection Biology Unit, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Department of Animal Sciences, University of Göttingen, Burckhardtweg 2, Göttingen, Germany
| | - Addisu Mekonnen
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, Oslo, Norway
| | - Amera Moges
- Department of Biology, College of Natural Sciences, Bahir Dar University, Bahir Dar, Ethiopia
| | - Nga Nguyen
- Department of Anthropology & Environmental Studies Program, California State University Fullerton, Fullerton, CA, United States of America
| | - Nils Chr. Stenseth
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, Oslo, Norway
| | - Christian Roos
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Gene Bank of Primates, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- * E-mail: (DZ); (CR)
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6
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Abu K, Mekonnen A, Bekele A, Fashing PJ. Diet and activity patterns of Arsi geladas in low-elevation disturbed habitat south of the Rift Valley at Indetu, Ethiopia. Primates 2017; 59:153-161. [PMID: 29230674 DOI: 10.1007/s10329-017-0640-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2017] [Accepted: 11/30/2017] [Indexed: 10/18/2022]
Abstract
Understanding the basic natural history of threatened primate taxa is crucial to developing and implementing successful conservation strategies for them. Data on feeding ecology and activity patterns are particularly important for identifying the strategies through which primates invest time and foraging effort towards survival and reproduction at a given locale. Here, we report the results of the first study of the diet and activity budget of Arsi geladas, a population of < 1000 individuals endemic to a heavily disturbed region of the southern Ethiopian Highlands and believed to represent a new taxon of geladas. We conducted our research on a band of 34 individuals belonging to five, one-male units at Indetu, eastern Arsi, Ethiopia, from August 2010 to May 2011 (excluding March 2011). Feeding accounted for 41.7% of total scans, followed by moving (20.3%), resting (19.0%), and social behavior (19.0%). Feeding and moving increased and resting and socializing decreased during the dry season when food availability was probably lower than during the wet season. Geladas ate mostly graminoid leaves (51.7% of feeding scans) though they also consumed graminoid rhizomes (24.4%), forb tubers (7.1%), forb leaves (7.1%), cactus, shrub, and tree fruits (3.6%), graminoid corms (1.7%), forb roots (1.6%), and unidentified items (3.0%). Underground foods (corms, rhizomes, roots, and tubers) accounted for 22-47% (mean = 35%) of the monthly (n = 9) diet and were eaten slightly more during the wet season than during the dry season. Contributions of human crops to the gelada diet could not be quantified without creating conflict between farmers and researchers, though we did note that geladas visited farms on 5-10% of study days. Threats from farmers, children, and dogs limited the geladas' access to crops once they entered the farms. Further research involving questionnaire surveys of farmers, direct observation of crop damage by geladas, and DNA metabarcoding of gelada feces are crucial to the development of strategies to mitigate human-gelada conflict in the densely populated Arsi Zone of Ethiopia.
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Affiliation(s)
- Kelil Abu
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Addisu Mekonnen
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia. .,Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066, Blindern, 0316, Oslo, Norway.
| | - Afework Bekele
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Peter J Fashing
- Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066, Blindern, 0316, Oslo, Norway.,Department of Anthropology and Environmental Studies Program, California State University Fullerton, Fullerton, CA, 92834, USA
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SHOTAKE TAKAYOSHI, SAIJUNTHA WEERACHAI, AGATSUMA TAKESHI, KAWAMOTO YOSHI. Genetic diversity within and among gelada ( Theropithecus gelada) populations based on mitochondrial DNA analysis. ANTHROPOL SCI 2016. [DOI: 10.1537/ase.160717] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
| | - WEERACHAI SAIJUNTHA
- Walai Rukhavej Botanical Research Institute, Mahasarakham University, Maha Sarakham
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Snyder-Mackler N, Alberts SC, Bergman TJ. The socio-genetics of a complex society: female gelada relatedness patterns mirror association patterns in a multilevel society. Mol Ecol 2014; 23:6179-91. [PMID: 25362869 DOI: 10.1111/mec.12987] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 10/18/2014] [Accepted: 10/27/2014] [Indexed: 11/28/2022]
Abstract
Multilevel societies with fission-fusion dynamics--arguably the most complex animal societies--are defined by two or more nested levels of organization. The core of these societies are modular social units that regularly fission and fuse with one another. Despite convergent evolution in disparate taxa, we know strikingly little about how such societies form and how fitness benefits operate. Understanding the kinship structure of complex societies could inform us about the origins of the social structure as well as about the potential for individuals in these societies to accrue indirect fitness benefits. Here, we combined genetic and behavioural data on geladas (Theropithecus gelada), an Old World Monkey, to complete the most comprehensive socio-genetic analysis of a multilevel society to date. In geladas, individuals in the core social 'units', associate at different frequencies to form 'teams', 'bands' and, the largest aggregations, 'communities'. Units were composed of closely related females, and females remained with their close kin during permanent fissions of units. Interestingly, female-female relatedness also significantly predicted between-unit, between-team and between-band association patterns, while male-male relatedness did not. Thus, it is likely that the socio-genetic structure of gelada society results from females maintaining associations with their female relatives during successive unit fissions--possibly in an attempt to balance the direct and indirect fitness benefits of group living. Overall, the persistence of associations among related females across generations appears to drive the formation of higher levels of gelada society, suggesting that females seek kin for inclusive fitness benefits at multiple levels of gelada society.
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Affiliation(s)
- Noah Snyder-Mackler
- Department of Evolutionary Anthropology, Duke University, 130 Science Dr., Durham, NC, USA
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Belay G, Mori A. Intraspecific phylogeographic mitochondrial DNA (D-loop) variation of Gelada baboon, Theropithecus gelada, in Ethiopia. BIOCHEM SYST ECOL 2006. [DOI: 10.1016/j.bse.2006.01.004] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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10
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Mori A, Iwamoto T, Mori U, Bekele A. Sociological and demographic characteristics of a recently found arsi gelada population in ethiopia. Primates 1999. [DOI: 10.1007/bf02557559] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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