1
|
Feiner N, Yang W, Bunikis I, While GM, Uller T. Adaptive introgression reveals the genetic basis of a sexually selected syndrome in wall lizards. Sci Adv 2024; 10:eadk9315. [PMID: 38569035 PMCID: PMC10990284 DOI: 10.1126/sciadv.adk9315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 02/28/2024] [Indexed: 04/05/2024]
Abstract
The joint expression of particular colors, morphologies, and behaviors is a common feature of adaptation, but the genetic basis for such "phenotypic syndromes" remains poorly understood. Here, we identified a complex genetic architecture associated with a sexually selected syndrome in common wall lizards, by capitalizing on the adaptive introgression of coloration and morphology into a distantly related lineage. Consistent with the hypothesis that the evolution of phenotypic syndromes in vertebrates is facilitated by developmental linkage through neural crest cells, most of the genes associated with the syndrome are involved in neural crest cell regulation. A major locus was a ~400-kb region, characterized by standing structural genetic variation and previously implied in the evolutionary innovation of coloration and beak size in birds. We conclude that features of the developmental and genetic architecture contribute to maintaining trait integration, facilitating the extensive and rapid introgressive spread of suites of sexually selected characters.
Collapse
Affiliation(s)
| | - Weizhao Yang
- Department of Biology, Lund University, Lund, Sweden
| | - Ignas Bunikis
- Uppsala Genome Center, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden
| | - Geoffrey M. While
- School of Natural Sciences, University of Tasmania, Sandy Bay, Tasmania, Australia
| | - Tobias Uller
- Department of Biology, Lund University, Lund, Sweden
| |
Collapse
|
2
|
Hanski E, Joseph S, Raulo A, Wanelik KM, O'Toole Á, Knowles SCL, Little TJ. Epigenetic age estimation of wild mice using faecal samples. Mol Ecol 2024; 33:e17330. [PMID: 38561950 DOI: 10.1111/mec.17330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/19/2024] [Accepted: 03/01/2024] [Indexed: 04/04/2024]
Abstract
Age is a key parameter in population ecology, with a myriad of biological processes changing with age as organisms develop in early life then later senesce. As age is often hard to accurately measure with non-lethal methods, epigenetic methods of age estimation (epigenetic clocks) have become a popular tool in animal ecology and are often developed or calibrated using captive animals of known age. However, studies typically rely on invasive blood or tissue samples, which limit their application in more sensitive or elusive species. Moreover, few studies have directly assessed how methylation patterns and epigenetic age estimates compare across environmental contexts (e.g. captive or laboratory-based vs. wild animals). Here, we built a targeted epigenetic clock from laboratory house mice (strain C57BL/6, Mus musculus) using DNA from non-invasive faecal samples, and then used it to estimate age in a population of wild mice (Mus musculus domesticus) of unknown age. This laboratory mouse-derived epigenetic clock accurately predicted adult wild mice to be older than juveniles and showed that wild mice typically increased in epigenetic age over time, but with wide variation in epigenetic ageing rate among individuals. Our results also suggested that, for a given body mass, wild mice had higher methylation across targeted CpG sites than laboratory mice (and consistently higher epigenetic age estimates as a result), even among the smallest, juvenile mice. This suggests wild and laboratory mice may display different CpG methylation levels from very early in life and indicates caution is needed when developing epigenetic clocks on laboratory animals and applying them in the wild.
Collapse
Affiliation(s)
- Eveliina Hanski
- University of Oxford, Oxford, UK
- University of Helsinki, Helsinki, Finland
| | | | - Aura Raulo
- University of Oxford, Oxford, UK
- University of Turku, Turku, Finland
| | - Klara M Wanelik
- University of Oxford, Oxford, UK
- University of Surrey, Guildford, UK
| | | | | | | |
Collapse
|
3
|
Kabalika Z, Haydon DT, McGill RAR, Morales JM, Morrison TA, Newton J, Hopcraft JGC. Using sulfur stable isotope ratios (δ 34 S) for animal geolocation: Estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair. Rapid Commun Mass Spectrom 2024; 38:e9674. [PMID: 38124168 PMCID: PMC10909487 DOI: 10.1002/rcm.9674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 10/22/2023] [Accepted: 10/24/2023] [Indexed: 12/23/2023]
Abstract
RATIONALE Metabolism and diet quality play an important role in determining delay mechanisms between an animal ingesting an element and depositing the associated isotope signal in tissue. While many isotope mixing models assume instantaneous reflection of diet in an animal- tissue, this is rarely the case. Here we use data from wildebeest to measure the lag time between ingestion of 34 S and its detection in tail hair. METHODS We use time-lagged regression analysis of δ34 S data from GPS-collared blue wildebeest from the Serengeti ecosystem in combination with δ34 S isoscape data to estimate the lag time between an animal ingesting and depositing 34 S in tail hair. RESULTS The best fitting regression model of δ34 S in tail hair and an individual- position on the δ34 S isoscape is generated assuming an average time delay of 78 days between ingestion and detection in tail hair. This suggests that sulfur may undergo multiple metabolic transitions before being deposited in tissue. CONCLUSION Our findings help to unravel the underlying complexities associated with sulfur metabolism and are broadly consistent with results from other species. These findings will help to inform research aiming to apply the variation of δ34 S in inert biological material for geolocation or understanding dietary changes, especially for fast moving migratory ungulates such as wildebeest.
Collapse
Affiliation(s)
- Zabibu Kabalika
- School of Biodiversity, One Health and Veterinary Medicine, Graham Kerr Building, University of Glasgow, Glasgow, UK
| | - Daniel T Haydon
- School of Biodiversity, One Health and Veterinary Medicine, Graham Kerr Building, University of Glasgow, Glasgow, UK
| | - Rona A R McGill
- National Environmental Isotope Facility, Scottish Universities Environmental Research Centre, University of Glasgow, Glasgow, UK
| | - Juan M Morales
- School of Biodiversity, One Health and Veterinary Medicine, Graham Kerr Building, University of Glasgow, Glasgow, UK
| | - Thomas A Morrison
- School of Biodiversity, One Health and Veterinary Medicine, Graham Kerr Building, University of Glasgow, Glasgow, UK
| | - Jason Newton
- National Environmental Isotope Facility, Scottish Universities Environmental Research Centre, University of Glasgow, Glasgow, UK
| | - J Grant C Hopcraft
- School of Biodiversity, One Health and Veterinary Medicine, Graham Kerr Building, University of Glasgow, Glasgow, UK
| |
Collapse
|
4
|
Mikryukov V, Dulya O, Zizka A, Bahram M, Hagh-Doust N, Anslan S, Prylutskyi O, Delgado-Baquerizo M, Maestre FT, Nilsson H, Pärn J, Öpik M, Moora M, Zobel M, Espenberg M, Mander Ü, Khalid AN, Corrales A, Agan A, Vasco-Palacios AM, Saitta A, Rinaldi A, Verbeken A, Sulistyo B, Tamgnoue B, Furneaux B, Duarte Ritter C, Nyamukondiwa C, Sharp C, Marín C, Gohar D, Klavina D, Sharmah D, Dai DQ, Nouhra E, Biersma EM, Rähn E, Cameron E, De Crop E, Otsing E, Davydov E, Albornoz F, Brearley F, Buegger F, Zahn G, Bonito G, Hiiesalu I, Barrio I, Heilmann-Clausen J, Ankuda J, Doležal J, Kupagme J, Maciá-Vicente J, Djeugap Fovo J, Geml J, Alatalo J, Alvarez-Manjarrez J, Põldmaa K, Runnel K, Adamson K, Bråthen KA, Pritsch K, Tchan Issifou K, Armolaitis K, Hyde K, Newsham KK, Panksep K, Lateef AA, Hansson L, Lamit L, Saba M, Tuomi M, Gryzenhout M, Bauters M, Piepenbring M, Wijayawardene NN, Yorou N, Kurina O, Mortimer P, Meidl P, Kohout P, Puusepp R, Drenkhan R, Garibay-Orijel R, Godoy R, Alkahtani S, Rahimlou S, Dudov S, Põlme S, Ghosh S, Mundra S, Ahmed T, Netherway T, Henkel T, Roslin T, Nteziryayo V, Fedosov V, Onipchenko V, Yasanthika WAE, Lim Y, Van Nuland M, Soudzilovskaia N, Antonelli A, Kõljalg U, Abarenkov K, Tedersoo L. Connecting the multiple dimensions of global soil fungal diversity. Sci Adv 2023; 9:eadj8016. [PMID: 38019923 PMCID: PMC10686567 DOI: 10.1126/sciadv.adj8016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 10/30/2023] [Indexed: 12/01/2023]
Abstract
How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.
Collapse
Affiliation(s)
- Vladimir Mikryukov
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Olesya Dulya
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Alexander Zizka
- Department of Biology, Philipps-University, Marburg 35032, Germany
| | - Mohammad Bahram
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala 75007, Sweden
| | - Niloufar Hagh-Doust
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Sten Anslan
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Oleh Prylutskyi
- Department of Mycology and Plant Resistance, School of Biology, V.N. Karazin Kharkiv National University, Kharkiv 61022, Ukraine
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistemico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), Consejo Superior de Investigaciones Científicas, Sevilla 41012, Spain
| | - Fernando T. Maestre
- Instituto Multidisciplinar para el Estudio del Medio ‘Ramón Margalef’ and Departamento de Ecología, Universidad de Alicante, Alicante 03690, Spain
| | - Henrik Nilsson
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg 40530, Sweden
| | - Jaan Pärn
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Mikk Espenberg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Ülo Mander
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | | | - Adriana Corrales
- Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Universidad del Rosario, Bogotá 111221, Colombia
| | - Ahto Agan
- Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Aída-M. Vasco-Palacios
- Grupo de BioMicro y Microbiología Ambiental, Escuela de Microbiologia, Universidad de Antioquia UdeA, Medellin 050010, Colombia
| | - Alessandro Saitta
- Department of Agricultural, Food and Forest Sciences, University of Palermo, Palermo 90128, Italy
| | - Andrea Rinaldi
- Department of Biomedical Sciences, University of Cagliari, Cagliari 09124, Italy
| | | | - Bobby Sulistyo
- Department Biology, Ghent University, Ghent 9000, Belgium
| | - Boris Tamgnoue
- Department of Crop Science, University of Dschang, Dschang, Cameroon
| | - Brendan Furneaux
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä 40014, Finland
| | | | - Casper Nyamukondiwa
- Department of Biological Sciences and Biotechnology, Botswana International University of Science and Technology, Palapye 10071, Botswana
| | - Cathy Sharp
- Natural History Museum of Zimbabwe, Bulawayo, Zimbabwe
| | - César Marín
- Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad SantoTomás, Valdivia, Chile
| | - Daniyal Gohar
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
| | - Darta Klavina
- Latvian State Forest Research Institute Silava, Salaspils 2169, Latvia
| | - Dipon Sharmah
- Department of Botany, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Pondicherry University, Port Blair 744101, India
| | - Dong-Qin Dai
- College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China
| | - Eduardo Nouhra
- Instituto Multidisciplinario de Biología Vegetal (CONICET), Universidad Nacional de Córdoba, Cordoba 5000, Argentina
| | - Elisabeth Machteld Biersma
- Natural History Museum of Denmark, Copenhagen 1123, Denmark
- British Antarctic Survey, NERC, High Cross, Cambridge CB3 0ET, UK
| | - Elisabeth Rähn
- Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Erin Cameron
- Department of Environmental Science, Saint Mary's University, Halifax B3H 3C3, Canada
| | - Eske De Crop
- Department Biology, Ghent University, Ghent 9000, Belgium
| | - Eveli Otsing
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
| | | | - Felipe Albornoz
- Land and Water, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Wembley 6014, Australia
| | - Francis Brearley
- Department of Natural Sciences, Manchester Metropolitan University, Manchester M1 5GD, UK
| | - Franz Buegger
- Helmholtz Zentrum München, Neuherberg 85764, Germany
| | - Geoffrey Zahn
- Biology Department, Utah Valley University, Orem, UT 84058, USA
| | - Gregory Bonito
- Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824-6254, USA
| | - Inga Hiiesalu
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Isabel Barrio
- Faculty of Natural and Environmental Sciences, Agricultural University of Iceland, Reykjavík 112, Iceland
| | - Jacob Heilmann-Clausen
- Center for Macroecology, Evolution and Climate, University of Copenhagen, Copenhagen 1350, Denmark
| | - Jelena Ankuda
- Vokė branch, Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry (LAMMC), Vilnius LT-02232, Lithuania
| | - Jiri Doležal
- Department of Botany, Faculty of Science, University of South Bohemia, České Budějovice 37005, Czech Republic
| | - John Kupagme
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
| | - Jose Maciá-Vicente
- Department of Environmental Sciences, Plant Ecology and Nature Conservation, Wageningen University and Research, Wageningen 6708, Netherlands
| | | | - József Geml
- ELKH-EKKE Lendület Environmental Microbiome Research Group, Eszterházy Károly Catholic University, Eger 3300, Hungary
| | - Juha Alatalo
- Environmental Science Center, Qatar University, Doha, Qatar
| | | | - Kadri Põldmaa
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
- Natural History Museum, University of Tartu, Tartu 51003, Estonia
| | - Kadri Runnel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
| | - Kalev Adamson
- Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Kari-Anne Bråthen
- Department of Arctic and Marine Biology, The Arctic University of Norway, Tromsø 9019, Norway
| | - Karin Pritsch
- Helmholtz Zentrum München, Neuherberg 85764, Germany
| | - Kassim Tchan Issifou
- Research Unit Tropical Mycology and Plants-Soil Fungi Interactions, University of Parakou, Parakou 00229, Benin
| | - Kęstutis Armolaitis
- Department of Silviculture and Ecology, Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry (LAMMC), Girionys 53101, Lithuania
| | - Kevin Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Kevin K. Newsham
- British Antarctic Survey, NERC, High Cross, Cambridge CB3 0ET, UK
| | - Kristel Panksep
- Chair of Hydrobiology and Fishery, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Adebola Azeez Lateef
- Department of Plant Biology, Faculty of Life Science, University of Ilorin, Ilorin 240102, Nigeria
- Department of Forest Sciences, University of Helsinki, Helsinki 00014, Finland
| | - Linda Hansson
- Gothenburg Centre for Sustainable Development, Gothenburg 41133, Sweden
| | - Louis Lamit
- Department of Biology, Syracuse University, Syracuse 13244, USA
| | - Malka Saba
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Maria Tuomi
- Department of Arctic and Marine Biology, The Arctic University of Norway, Tromsø 9019, Norway
| | - Marieka Gryzenhout
- Department of Genetics, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
| | - Marijn Bauters
- Department of Environment, Faculty of Bioscience Engineering, Ghent University, Ghent 9000, Belgium
| | - Meike Piepenbring
- Mycology Working Group, Goethe University Frankfurt am Main, Frankfurt am Main 60438, Germany
| | - Nalin N. Wijayawardene
- College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China
| | - Nourou Yorou
- Research Unit Tropical Mycology and Plants-Soil Fungi Interactions, University of Parakou, Parakou 00229, Benin
| | - Olavi Kurina
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Peter Mortimer
- Center For Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Peter Meidl
- Freie Universität Berlin, Institut für Biologie, Berlin 14195, Germany
| | - Petr Kohout
- Institute of Microbiology, Czech Academy of Sciences, Prague, Czech Republic
| | - Rasmus Puusepp
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
| | - Rein Drenkhan
- Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu 51006, Estonia
| | - Roberto Garibay-Orijel
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México 04510, Mexico
| | - Roberto Godoy
- Instituto Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
| | - Saad Alkahtani
- Department of Zoology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Saleh Rahimlou
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
| | - Sergey Dudov
- Department of Ecology and Plant Geography, Moscow Lomonosov State University, Moscow 119234, Russia
| | - Sergei Põlme
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
- Natural History Museum, University of Tartu, Tartu 51003, Estonia
| | - Soumya Ghosh
- Department of Genetics, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein 9300, South Africa
| | - Sunil Mundra
- Department of Biology, College of Science, United Arab Emirates University (UAEU), Al Ain, UAE
| | - Talaat Ahmed
- Environmental Science Center, Qatar University, Doha, Qatar
| | - Tarquin Netherway
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala 75007, Sweden
| | - Terry Henkel
- Department of Biological Sciences, California State Polytechnic University, Arcata, CA 95521, USA
| | - Tomas Roslin
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala 75007, Sweden
| | - Vincent Nteziryayo
- Department of Food Science and Technology, University of Burundi, Bujumbura Burundi
| | - Vladimir Fedosov
- Department of Ecology and Plant Geography, Moscow Lomonosov State University, Moscow 119234, Russia
| | - Vladimir Onipchenko
- Department of Ecology and Plant Geography, Moscow Lomonosov State University, Moscow 119234, Russia
| | | | - Young Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 08826, Korea
| | - Michael Van Nuland
- Society for the Protection of Underground Networks (SPUN), Dover, DE 19901, USA
| | | | | | - Urmas Kõljalg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu 50409, Estonia
- Natural History Museum, University of Tartu, Tartu 51003, Estonia
| | - Kessy Abarenkov
- Natural History Museum, University of Tartu, Tartu 51003, Estonia
| | - Leho Tedersoo
- Center of Mycology and Microbiology, University of Tartu, Tartu 50409, Estonia
- Department of Zoology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| |
Collapse
|
5
|
Cram DL, Lloyd-Jones DJ, van der Wal JEM, Lund J, Buanachique IO, Muamedi M, Nanguar CI, Ngovene A, Raveh S, Boner W, Spottiswoode CN. Guides and cheats: producer-scrounger dynamics in the human-honeyguide mutualism. Proc Biol Sci 2023; 290:20232024. [PMID: 37935365 PMCID: PMC10645085 DOI: 10.1098/rspb.2023.2024] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 10/18/2023] [Indexed: 11/09/2023] Open
Abstract
Foraging animals commonly choose whether to find new food (as 'producers') or scavenge from others (as 'scroungers'), and this decision has ecological and evolutionary consequences. Understanding these tactic decisions is particularly vital for naturally occurring producer-scrounger systems of economic importance, because they determine the system's productivity and resilience. Here, we investigate how individuals' traits predict tactic decisions, and the consistency and pay-offs of these decisions, in the remarkable mutualism between humans (Homo sapiens) and greater honeyguides (Indicator indicator). Honeyguides can either guide people to bees' nests and eat the resulting beeswax (producing), or scavenge beeswax (scrounging). Our results suggest that honeyguides flexibly switched tactics, and that guiding yielded greater access to the beeswax. Birds with longer tarsi scrounged more, perhaps because they are more competitive. The lightest females rarely guided, possibly to avoid aggression, or because genetic matrilines may affect female body mass and behaviour in this species. Overall, aspects of this producer-scrounger system probably increase the productivity and resilience of the associated human-honeyguide mutualism, because the pay-offs incentivize producing, and tactic-switching increases the pool of potential producers. Broadly, our findings suggest that even where tactic-switching is prevalent and producing yields greater pay-offs, certain phenotypes may be predisposed to one tactic.
Collapse
Affiliation(s)
- Dominic L. Cram
- Department of Zoology, University of Cambridge, Cambridge, Cambridgeshire CB2 3EJ, UK
| | - David J. Lloyd-Jones
- FitzPatrick Institute of African Ornithology, University of Cape Town, Rondebosch 7701, South Africa
| | - Jessica E. M. van der Wal
- FitzPatrick Institute of African Ornithology, University of Cape Town, Rondebosch 7701, South Africa
| | - Jess Lund
- Department of Zoology, University of Cambridge, Cambridge, Cambridgeshire CB2 3EJ, UK
| | | | | | | | - Antonio Ngovene
- EO Wilson Biodiversity Laboratory, Gorongosa National Park, Mozambique
| | - Shirley Raveh
- School of Biodiversity, One Health and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Graham Kerr Building, Glasgow G12 8QQ, UK
| | - Winnie Boner
- School of Biodiversity, One Health and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Graham Kerr Building, Glasgow G12 8QQ, UK
| | - Claire N. Spottiswoode
- Department of Zoology, University of Cambridge, Cambridge, Cambridgeshire CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, University of Cape Town, Rondebosch 7701, South Africa
| |
Collapse
|
6
|
Cant J, Reimer JD, Sommer B, Cook KM, Kim SW, Sims CA, Mezaki T, O'Flaherty C, Brooks M, Malcolm HA, Pandolfi JM, Salguero‐Gómez R, Beger M. Coral assemblages at higher latitudes favor short-term potential over long-term performance. Ecology 2023; 104:e4138. [PMID: 37458125 PMCID: PMC10909567 DOI: 10.1002/ecy.4138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 06/02/2023] [Accepted: 06/14/2023] [Indexed: 07/18/2023]
Abstract
The persistent exposure of coral assemblages to more variable abiotic regimes is assumed to augment their resilience to future climatic variability. Yet, while the determinants of coral population resilience across species remain unknown, we are unable to predict the winners and losers across reef ecosystems exposed to increasingly variable conditions. Using annual surveys of 3171 coral individuals across Australia and Japan (2016-2019), we explore spatial variation across the short- and long-term dynamics of competitive, stress-tolerant, and weedy assemblages to evaluate how abiotic variability mediates the structural composition of coral assemblages. We illustrate how, by promoting short-term potential over long-term performance, coral assemblages can reduce their vulnerability to stochastic environments. However, compared to stress-tolerant, and weedy assemblages, competitive coral taxa display a reduced capacity for elevating their short-term potential. Accordingly, future climatic shifts threaten the structural complexity of coral assemblages in variable environments, emulating the degradation expected across global tropical reefs.
Collapse
Affiliation(s)
- James Cant
- Centre for Biological DiversityUniversity of St AndrewsSt AndrewsUK
- School of Biology, Faculty of Biological SciencesUniversity of LeedsLeedsUK
| | - James D. Reimer
- Molecular Invertebrate Systematics and Ecology LaboratoryGraduate School of Engineering and Science, University of the RyukyusNishiharaJapan
- Tropical Biosphere Research CentreUniversity of the RyukyusNishiharaJapan
| | - Brigitte Sommer
- School of Life and Environmental ScienceThe University of SydneyCamperdownNew South WalesAustralia
- School of Life SciencesUniversity of Technology SydneyUltimoNew South WalesAustralia
| | - Katie M. Cook
- School of Biology, Faculty of Biological SciencesUniversity of LeedsLeedsUK
- National Institute of Water and Atmospheric ResearchHamiltonNew Zealand
| | - Sun W. Kim
- Australian Research Council Centre of Excellence for Coral Reef Studies, School of Biological SciencesThe University of QueenslandBrisbaneQueenslandAustralia
| | - Carrie A. Sims
- Smithsonian Tropical Research InstitutePanama CityRepublic of Panama
| | - Takuma Mezaki
- Kuroshio Biological Research Foundation, Nishidomari, Otsuki‐choKochiJapan
| | | | - Maxime Brooks
- School of Biology, Faculty of Biological SciencesUniversity of LeedsLeedsUK
| | - Hamish A. Malcolm
- Fisheries Research, Department of Primary IndustriesCoffs HarbourNew South WalesAustralia
| | - John M. Pandolfi
- Australian Research Council Centre of Excellence for Coral Reef Studies, School of Biological SciencesThe University of QueenslandBrisbaneQueenslandAustralia
| | - Roberto Salguero‐Gómez
- Department of ZoologyUniversity of OxfordOxfordUK
- Centre for Biodiversity and Conservation Science, School of Biological SciencesUniversity of QueenslandBrisbaneQueenslandAustralia
- Max Planck Institute for Demographic ResearchRostockGermany
| | - Maria Beger
- School of Biology, Faculty of Biological SciencesUniversity of LeedsLeedsUK
- Centre for Biodiversity and Conservation Science, School of Biological SciencesUniversity of QueenslandBrisbaneQueenslandAustralia
| |
Collapse
|
7
|
Idowu GA, Olalemi AO, Ileke KD. COVID-19 face masks attracted Cellulomonas and Acinetobacter bacteria and provided breeding haven for red cotton bug (Dysdercus suturellus) and house cricket (Acheta domesticus). Environ Sci Pollut Res Int 2023; 30:23510-23526. [PMID: 36327070 PMCID: PMC9631651 DOI: 10.1007/s11356-022-23865-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
This study investigated the possibility of COVID-19 medical face masks to affect bacterial and macrofaunal communities in open soil environment. An estimated 1.24 trillion of face masks have been used and discarded as a result of the COVID-19 pandemic, with a significant part of this ending up in the soil environment, where they degrade gradually over time. Because bacteria and macrofauna are sensitive indicators of changes in soil ecosystem, we investigated possible impacts of face masks on population, distribution, and diversity of these soil species. Effect on soil bacterial community was studied by both culture-based and advanced molecular (metagenomics) approach, while impact on macrofauna was investigated by examining monoliths around heap of masks for soil insects. In both cases, control soil experiments without face masks were also set up and monitored over a period of 48 weeks. The study found that the presence of face masks led to a more diverse bacterial community, although no influence on overall bacterial population was evidenced. More importantly, bacteria belonging to the genera Cellulomonas and Acinetobacter were found prominently around face masks and are believed to be involved in biodegradation of the masks. The bacterial community around the masks was dominated by Proteobacteria (29.7-38.7%), but the diversity of species increased gradually with time. Tiny black ants (Monomorium invidium) were attracted to the face masks to take advantage of water retained by the masks during the period of little rainfall. The heaps of face masks also provided shelter and breeding "haven" for soil insects, notably the red cotton bug (Dysdercus suturellus) and house cricket (Acheta domesticus), thereby impacting positively on the population of insect species in the environment. This study provides insights into the actual impacts of face masks on soil organisms under normal outdoor environmental conditions.
Collapse
Affiliation(s)
- Gideon Aina Idowu
- Department of Chemistry, School of Physical Sciences, Federal University of Technology Akure, P. M. B. 704, Akure, Ondo State, Nigeria.
| | - Adewale Oluwasogo Olalemi
- Department of Microbiology, School of Life Sciences, Federal University of Technology Akure, Ondo State, Nigeria
| | - Kayode David Ileke
- Department of Biology, School of Life Sciences, Federal University of Technology Akure, Ondo State, Nigeria
| |
Collapse
|
8
|
Delgado-Baquerizo M, Hu HW, Maestre FT, Guerra CA, Eisenhauer N, Eldridge DJ, Zhu YG, Chen QL, Trivedi P, Du S, Makhalanyane TP, Verma JP, Gozalo B, Ochoa V, Asensio S, Wang L, Zaady E, Illán JG, Siebe C, Grebenc T, Zhou X, Liu YR, Bamigboye AR, Blanco-Pastor JL, Duran J, Rodríguez A, Mamet S, Alfaro F, Abades S, Teixido AL, Peñaloza-Bojacá GF, Molina-Montenegro MA, Torres-Díaz C, Perez C, Gallardo A, García-Velázquez L, Hayes PE, Neuhauser S, He JZ. The global distribution and environmental drivers of the soil antibiotic resistome. Microbiome 2022; 10:219. [PMID: 36503688 PMCID: PMC9743735 DOI: 10.1186/s40168-022-01405-w] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 10/31/2022] [Indexed: 05/03/2023]
Abstract
BACKGROUND Little is known about the global distribution and environmental drivers of key microbial functional traits such as antibiotic resistance genes (ARGs). Soils are one of Earth's largest reservoirs of ARGs, which are integral for soil microbial competition, and have potential implications for plant and human health. Yet, their diversity and global patterns remain poorly described. Here, we analyzed 285 ARGs in soils from 1012 sites across all continents and created the first global atlas with the distributions of topsoil ARGs. RESULTS We show that ARGs peaked in high latitude cold and boreal forests. Climatic seasonality and mobile genetic elements, associated with the transmission of antibiotic resistance, were also key drivers of their global distribution. Dominant ARGs were mainly related to multidrug resistance genes and efflux pump machineries. We further pinpointed the global hotspots of the diversity and proportions of soil ARGs. CONCLUSIONS Together, our work provides the foundation for a better understanding of the ecology and global distribution of the environmental soil antibiotic resistome. Video Abstract.
Collapse
Affiliation(s)
- Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, E-41012, Sevilla, Spain.
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, 41013, Sevilla, Spain.
| | - Hang-Wei Hu
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, 3010, Australia.
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Science, Fujian Normal University, Fuzhou, 350007, China.
| | - Fernando T Maestre
- Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
- Departamento de Ecología, Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Carlos A Guerra
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biology, Martin-Luther University Halle Wittenberg, Am Kirchtor 1, 06108, Halle (Saale), Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, 04103, Leipzig, Germany
- Institute of Biology, Leipzig University, Puschstrasse 4, 04103, Leipzig, Germany
| | - David J Eldridge
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Yong-Guan Zhu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Qing-Lin Chen
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, 3010, Australia
| | - Pankaj Trivedi
- Microbiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO, 80523, USA
| | - Shuai Du
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Thulani P Makhalanyane
- Department of Biochemistry, Genetics and Microbiology, Centre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, 0028, South Africa
| | - Jay Prakash Verma
- Plant-Microbe Interactions Lab., Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, 221005, India
- Soil Microbiology Lab., Department of Soil Science, Federal University of Ceara, Fortaleza, Brazil
| | - Beatriz Gozalo
- Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Victoria Ochoa
- Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Sergio Asensio
- Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Ling Wang
- Institute of Grassland Science/School of Life Science, Northeast Normal University, and Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, 130024, Jilin, China
| | - Eli Zaady
- Agricultural Research Organization, Department of Natural Resources, Institute of Plant Sciences, Gilat Research Center, Mobile Post, 8531100, Negev, Israel
| | - Javier G Illán
- Department of Entomology, Washington State University, Pullman, WA, 99164, USA
| | - Christina Siebe
- Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, México City D.F., CP, 04510, México
| | - Tine Grebenc
- Department of Forest Physiology and Genetics, Slovenian Forestry Institute, Ljubljana, Slovenia
| | - Xiaobing Zhou
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, CAS, Urumqi, China
| | - Yu-Rong Liu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, China
| | | | - José L Blanco-Pastor
- INRAE, UR4 (URP3F), Centre Nouvelle-Aquitaine-Poitiers, Lusignan, France
- Department of Plant Biology and Ecology, University of Seville, Avda. Reina Mercedes 6, ES-41012, Seville, Spain
| | - Jorge Duran
- Misión Biolóxica de Galicia, Consejo Superior de Investigaciones Científicas, 36143, Pontevedra, Spain
- Department of Life Sciences, Centre for Functional Ecology, University of Coimbra, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal
| | - Alexandra Rodríguez
- Department of Life Sciences, Centre for Functional Ecology, University of Coimbra, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal
| | - Steven Mamet
- College of Agriculture and Bioresources Department of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada
| | - Fernando Alfaro
- GEMA Center for Genomics, Ecology & Environment, Universidad Mayor, Santiago, Chile
| | - Sebastian Abades
- GEMA Center for Genomics, Ecology & Environment, Universidad Mayor, Santiago, Chile
| | - Alberto L Teixido
- Departamento de Botânica e Ecologia, Instituto de Biociências, Universidade Federal de Mato Grosso, Av. Fernando Corrêa, 2367, Boa Esperança, Cuiabá, MT, 78060-900, Brazil
| | - Gabriel F Peñaloza-Bojacá
- Laboratório de Sistemática Vegetal, Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, MG, 31270-901, Brazil
| | | | - Cristian Torres-Díaz
- Grupo de Biodiversidad y Cambio Global (BCG), Departamento de Ciencias Básicas, Universidad del Bío-Bío, Campus Fernando May, Chillán, Chile
| | - Cecilia Perez
- Instituto de Ecología y Biodiversidad, Las Palmeras 3425, Santiago, Chile
| | - Antonio Gallardo
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, 41013, Sevilla, Spain
- Departamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, 41013, Sevilla, Spain
| | - Laura García-Velázquez
- Departamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, 41013, Sevilla, Spain
| | - Patrick E Hayes
- School of Biological Sciences, The University of Western Australia, Perth, WA, 6009, Australia
| | - Sigrid Neuhauser
- Institute of Microbiology, University of Innsbruck, Innsbruck, Austria
| | - Ji-Zheng He
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, 3010, Australia.
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Science, Fujian Normal University, Fuzhou, 350007, China.
| |
Collapse
|
9
|
Lange ID, Molina-Hernández A, Medellín-Maldonado F, Perry CT, Álvarez-Filip L. Structure-from-motion photogrammetry demonstrates variability in coral growth within colonies and across habitats. PLoS One 2022; 17:e0277546. [PMID: 36383546 PMCID: PMC9668137 DOI: 10.1371/journal.pone.0277546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 10/29/2022] [Indexed: 11/17/2022] Open
Abstract
Coral growth is an important metric of coral health and underpins reef-scale functional attributes such as structural complexity and calcium carbonate production. There persists, however, a paucity of growth data for most reef-building regions, especially for coral species whose skeletal architecture prevents the use of traditional methods such as coring and Alizarin staining. We used structure-from-motion photogrammetry to quantify a range of colony-scale growth metrics for six coral species in the Mexican Caribbean and present a newly developed workflow to measure colony volume change over time. Our results provide the first growth metrics for two species that are now major space occupiers on Caribbean reefs, Agaricia agaricites and Agaricia tenuifolia. We also document higher linear extension, volume increase and calcification rates within back reef compared to fore reef environments for four other common species: Orbicella faveolata, Porites astreoides, Siderastrea siderea and Pseudodiploria strigosa. Linear extension rates in our study were lower than those obtained via computed tomography (CT) scans of coral cores from the same sites, as the photogrammetry method averages growth in all dimensions, while the CT method depicts growth only along the main growth axis (upwards). The comparison of direct volume change versus potential volume increase calculated from linear extension emphasizes the importance of assessing whole colony growth to improve calcification estimates. The method presented here provides an approach that can generate accurate calcification estimates alongside a range of other whole-colony growth metrics in a non-invasive way.
Collapse
Affiliation(s)
- Ines D. Lange
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, United Kingdom
- * E-mail:
| | - Ana Molina-Hernández
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Francisco Medellín-Maldonado
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Chris T. Perry
- Geography, Faculty of Environment, Science and Economy, University of Exeter, Exeter, United Kingdom
| | - Lorenzo Álvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| |
Collapse
|
10
|
Ryalls JMW, Bromfield LM, Bell L, Jasper J, Mullinger NJ, Blande JD, Girling RD. Concurrent anthropogenic air pollutants enhance recruitment of a specialist parasitoid. Proc Biol Sci 2022; 289:20221692. [PMID: 36350222 PMCID: PMC9653229 DOI: 10.1098/rspb.2022.1692] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 10/18/2022] [Indexed: 11/11/2023] Open
Abstract
Air pollutants-such as nitrogen oxides, emitted in diesel exhaust, and ozone (O3)-disrupt interactions between plants, the insect herbivore pests that feed upon them and natural enemies of those herbivores (e.g. parasitoids). Using eight field-based rings that emit regulated quantities of diesel exhaust and O3, we investigated how both pollutants, individually and in combination, altered the attraction and parasitism rate of a specialist parasitoid (Diaeretiella rapae) on aphid-infested and un-infested Brassica napus plants. Individual effects of O3 decreased D. rapae abundance and emergence by 37% and 55%, respectively, compared with ambient (control) conditions. When O3 and diesel exhaust were emitted concomitantly, D. rapae abundance and emergence increased by 79% and 181%, respectively, relative to control conditions. This attraction response occurred regardless of whether plants were infested with aphids and was associated with an increase in the concentration of aliphatic glucosinolates, especially gluconapin (3-butenyl-glucosinolate), within B. napus leaves. Plant defensive responses and their ability to attract natural aphid enemies may be beneficially impacted by pollution exposure. These results demonstrate the importance of incorporating multiple air pollutants when considering the effects of air pollution on plant-insect interactions.
Collapse
Affiliation(s)
- James M. W. Ryalls
- School of Agriculture, Policy and Development, University of Reading, Whiteknights, Earley Gate, Reading, Berkshire RG6 6EU, UK
| | - Lisa M. Bromfield
- School of Agriculture, Policy and Development, University of Reading, Whiteknights, Earley Gate, Reading, Berkshire RG6 6EU, UK
| | - Luke Bell
- School of Agriculture, Policy and Development, University of Reading, Whiteknights, Earley Gate, Reading, Berkshire RG6 6EU, UK
| | - Jake Jasper
- School of Chemistry, Food and Pharmacy, University of Reading, PO Box 226, Whiteknights, Reading, Berkshire RG6 6AP, UK
| | - Neil J. Mullinger
- UK Centre for Ecology and Hydrology, Bush Estate, Penicuik, Midlothian EH26 0QB, UK
| | - James D. Blande
- Department of Environmental and Biological Sciences, University of Eastern Finland, PO Box 1627, 70211 Kuopio, Finland
| | - Robbie D. Girling
- School of Agriculture, Policy and Development, University of Reading, Whiteknights, Earley Gate, Reading, Berkshire RG6 6EU, UK
| |
Collapse
|
11
|
Huzortey AA, Kudom AA, Mensah BA, Sefa-Ntiri B, Anderson B, Akyea A. Water quality assessment in mosquito breeding habitats based on dissolved organic matter and chlorophyll measurements by laser-induced fluorescence spectroscopy. PLoS One 2022; 17:e0252248. [PMID: 35895685 PMCID: PMC9328511 DOI: 10.1371/journal.pone.0252248] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 07/11/2022] [Indexed: 11/19/2022] Open
Abstract
Rapid urbanization and its associated pollution can affect water quality in mosquito breeding habitats and, as a result, the ecology and control of mosquito vectors. To understand the effects of pollution on mosquito vectors, an accurate assessment of water quality in breeding habitats is needed. Presently, water quality assessment of mosquito breeding habitats is usually based on the measurement of individual physicochemical parameters. However, several parameters are sometimes difficult to interpret or may not give a clear picture of the overall water quality of the breeding habitats, especially when the pollutants are in complex mixtures. This study employed the use of Laser-Induced Fluorescence (LIF) spectroscopy to assess water quality in breeding habitats of Anopheles, Aedes, and Culex mosquitoes in urban areas in Cape Coast, Ghana. The LIF spectra, using a 445-nm diode laser, were measured from field-collected water samples in the laboratory. The LIF spectra showed the presence of dissolved organic matter (DOM) and chlorophyll in the breeding habitats. The DOM and chlorophyll fluorescence signals were normalised by the Raman vibrational signals to determine water quality in each habitat. The overall water quality was better in Aedes breeding habitats than in Anopheles and Culex breeding habitats. The poor water quality in Anopheles and Culex breeding habitats was due to the presence of high fulvic acid and chlorophyll content, which often reflect pollutants from anthropogenic sources. Anopheles and Aedes habitats were made up of mainly An. coluzzii and Ae. aegypti respectively while Culex species were identified to genus level. The results add up to the growing concern about the breeding of Anopheles in polluted habitats. The study demonstrated for the first time the ability of LIF spectroscopy to assess water quality in mosquito breeding habitats.
Collapse
Affiliation(s)
- Andrew A. Huzortey
- Laser and Fibre Optics Centre, Department of Physics, University of Cape Coast, Cape Coast, Ghana
| | - Andreas A. Kudom
- Department of Conservation Biology and Entomology, University of Cape Coast, Cape Coast, Ghana
- * E-mail:
| | - Ben A. Mensah
- Department of Conservation Biology and Entomology, University of Cape Coast, Cape Coast, Ghana
| | - Baah Sefa-Ntiri
- Laser and Fibre Optics Centre, Department of Physics, University of Cape Coast, Cape Coast, Ghana
| | - Benjamin Anderson
- Laser and Fibre Optics Centre, Department of Physics, University of Cape Coast, Cape Coast, Ghana
| | - Angela Akyea
- Laser and Fibre Optics Centre, Department of Physics, University of Cape Coast, Cape Coast, Ghana
| |
Collapse
|
12
|
Lee D, Kim SG, Hong S, Madrona C, Oh Y, Park M, Komatsu N, Taylor LW, Chung B, Kim J, Hwang JY, Yu J, Lee DS, Jeong HS, You NH, Kim ND, Kim DY, Lee HS, Lee KH, Kono J, Wehmeyer G, Pasquali M, Vilatela JJ, Ryu S, Ku BC. Ultrahigh strength, modulus, and conductivity of graphitic fibers by macromolecular coalescence. Sci Adv 2022; 8:eabn0939. [PMID: 35452295 PMCID: PMC9032978 DOI: 10.1126/sciadv.abn0939] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 03/07/2022] [Indexed: 05/26/2023]
Abstract
Theoretical considerations suggest that the strength of carbon nanotube (CNT) fibers be exceptional; however, their mechanical performance values are much lower than the theoretical values. To achieve macroscopic fibers with ultrahigh performance, we developed a method to form multidimensional nanostructures by coalescence of individual nanotubes. The highly aligned wet-spun fibers of single- or double-walled nanotube bundles were graphitized to induce nanotube collapse and multi-inner walled structures. These advanced nanostructures formed a network of interconnected, close-packed graphitic domains. Their near-perfect alignment and high longitudinal crystallinity that increased the shear strength between CNTs while retaining notable flexibility. The resulting fibers have an exceptional combination of high tensile strength (6.57 GPa), modulus (629 GPa), thermal conductivity (482 W/m·K), and electrical conductivity (2.2 MS/m), thereby overcoming the limits associated with conventional synthetic fibers.
Collapse
Affiliation(s)
- Dongju Lee
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
- Department of Advanced Materials Engineering, Center for Advanced Material Analysis, The University of Suwon, Suwon 18323, Republic of Korea
| | - Seo Gyun Kim
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Seungki Hong
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Cristina Madrona
- IMDEA Materials Institute, Eric Kandel 2, Getafe, Madrid 28906, Spain
- Facultad de Ciencias, Universidad Autónoma de Madrid, Francisco Tomás y Valiente 7, Madrid 28049, Spain
| | - Yuna Oh
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Min Park
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Natsumi Komatsu
- Department of Electrical & Computer Engineering and the Carbon Hub, Rice University, Houston, TX 77005, USA
| | - Lauren W. Taylor
- Department of Chemical & Biomolecular Engineering and the Carbon Hub, Rice University, Houston, TX 77005, USA
| | - Bongjin Chung
- Department of Advanced Materials Engineering, Center for Advanced Material Analysis, The University of Suwon, Suwon 18323, Republic of Korea
| | - Jungwon Kim
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Jun Yeon Hwang
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Jaesang Yu
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Dong Su Lee
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Hyeon Su Jeong
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Nam Ho You
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Nam Dong Kim
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Dae-Yoon Kim
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
| | - Heon Sang Lee
- Department of Chemical Engineering, Dong-A University, Busan 49315, Republic of Korea
| | - Kun-Hong Lee
- Department of Chemical Engineering, Pohang University of Science & Technology, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Junichiro Kono
- Departments of Electrical & Computer Engineering, Physics & Astronomy, and Materials Science & NanoEngineering, the Smalley-Curl Institute, and the Carbon Hub, Rice University, Houston, TX 77005, USA
| | - Geoff Wehmeyer
- Department of Mechanical Engineering and the Carbon Hub, Rice University, Houston, TX 77005, USA
| | - Matteo Pasquali
- Departments of Chemical Engineering & Biomolecular Engineering, Chemistry, and Materials Science & NanoEngineering and The Carbon Hub, Rice University, 6100 Main Street, Houston, TX 77005, USA
| | - Juan J. Vilatela
- IMDEA Materials Institute, Eric Kandel 2, Getafe, Madrid 28906, Spain
| | - Seongwoo Ryu
- Department of Advanced Materials Engineering, Center for Advanced Material Analysis, The University of Suwon, Suwon 18323, Republic of Korea
| | - Bon-Cheol Ku
- Institute of Advanced Composite Materials, Korea Institute of Science and Technology (KIST), Wanju 55324, Republic of Korea
- Department of Nano Convergence, Jeonbuk National University, Jeonju 54896, Republic of Korea
| |
Collapse
|
13
|
Mundy JA, Grosso BF, Heikes CA, Ferenc Segedin D, Wang Z, Shao YT, Dai C, Goodge BH, Meier QN, Nelson CT, Prasad B, Xue F, Ganschow S, Muller DA, Kourkoutis LF, Chen LQ, Ratcliff WD, Spaldin NA, Ramesh R, Schlom DG. Liberating a hidden antiferroelectric phase with interfacial electrostatic engineering. Sci Adv 2022; 8:eabg5860. [PMID: 35108054 PMCID: PMC8809685 DOI: 10.1126/sciadv.abg5860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Antiferroelectric materials have seen a resurgence of interest because of proposed applications in a number of energy-efficient technologies. Unfortunately, relatively few families of antiferroelectric materials have been identified, precluding many proposed applications. Here, we propose a design strategy for the construction of antiferroelectric materials using interfacial electrostatic engineering. We begin with a ferroelectric material with one of the highest known bulk polarizations, BiFeO3. By confining thin layers of BiFeO3 in a dielectric matrix, we show that a metastable antiferroelectric structure can be induced. Application of an electric field reversibly switches between this new phase and a ferroelectric state. The use of electrostatic confinement provides an untapped pathway for the design of engineered antiferroelectric materials with large and potentially coupled responses.
Collapse
Affiliation(s)
- Julia A. Mundy
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA 94720, USA
- Department of Physics, Harvard University, Cambridge, MA 02138, USA
| | | | - Colin A. Heikes
- NIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20878, USA
| | - Dan Ferenc Segedin
- Department of Physics, Harvard University, Cambridge, MA 02138, USA
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Zhe Wang
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
| | - Yu-Tsun Shao
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
| | - Cheng Dai
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA
| | - Berit H. Goodge
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
- Kavli Institute at Cornell for Nanoscale Science, Ithaca, NY 14853, USA
| | - Quintin N. Meier
- Department of Materials, ETH Zürich, Zürich CH-8093, Switzerland
| | - Christopher T. Nelson
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA
| | - Bhagwati Prasad
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Fei Xue
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA
| | | | - David A. Muller
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
- Kavli Institute at Cornell for Nanoscale Science, Ithaca, NY 14853, USA
| | - Lena F. Kourkoutis
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA
- Kavli Institute at Cornell for Nanoscale Science, Ithaca, NY 14853, USA
| | - Long-Qing Chen
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA
| | - William D. Ratcliff
- NIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20878, USA
- Department of Materials Science and Engineering, University of Maryland, College Park, MD 20742, USA
| | | | - Ramamoorthy Ramesh
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA 94720, USA
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
- Materials Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Darrell G. Schlom
- Kavli Institute at Cornell for Nanoscale Science, Ithaca, NY 14853, USA
- Leibniz-Institut für Kristallzüchtung, 12489 Berlin, Germany
- Department of Materials Science and Engineering, Cornell University, Ithaca, NY 14853, USA
- Corresponding author.
| |
Collapse
|
14
|
Fox CW. Which peer reviewers voluntarily reveal their identity to authors? Insights into the consequences of open-identities peer review. Proc Biol Sci 2021; 288:20211399. [PMID: 34702079 PMCID: PMC8548798 DOI: 10.1098/rspb.2021.1399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 09/29/2021] [Indexed: 11/12/2022] Open
Abstract
Identifying reviewers is argued to improve the quality and fairness of peer review, but is generally disfavoured by reviewers. To gain some insight into the factors that influence when reviewers are willing to have their identity revealed, I examined which reviewers voluntarily reveal their identities to authors at the journal Functional Ecology, at which reviewer identities are confidential unless reviewers sign their comments to authors. I found that 5.6% of reviewers signed their comments to authors. This proportion increased slightly over time, from 4.4% in 2003-2005 to 6.7% in 2013-2015. Male reviewers were 1.8 times more likely to sign their comments to authors than were female reviewers, and this difference persisted over time. Few reviewers signed all of their reviews; reviewers were more likely to sign their reviews when their rating of the manuscript was more positive, and papers that had at least one signed review were more likely to be invited for revision. Signed reviews were, on average, longer and recommended more references to authors. My analyses cannot distinguish cause and effect for the patterns observed, but my results suggest that 'open-identities' review, in which reviewers are not permitted to be anonymous, will probably reduce the degree to which reviewers are critical in their assessment of manuscripts and will differentially affect recruitment of male and female reviewers, negatively affecting the diversity of reviewers recruited by journals.
Collapse
Affiliation(s)
- Charles W. Fox
- Department of Entomology, University of Kentucky, Lexington KY, USA
| |
Collapse
|
15
|
Fernández-Martínez M, Corbera J, Cano-Rocabayera O, Sabater F, Preece C. Do Bryophyte Elemental Concentrations Explain Their Morphological Traits? Plants (Basel) 2021; 10:1581. [PMID: 34451627 PMCID: PMC8398013 DOI: 10.3390/plants10081581] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 07/28/2021] [Accepted: 07/29/2021] [Indexed: 11/17/2022]
Abstract
Differences in the elemental composition of plants, mainly C, N, and P, have been shown to be related to differences in their nutritional status, and their morphological and functional traits. The relationship between morphological traits and micronutrients and trace elements, however, has been much less studied. Additionally, in bryophytes, research devoted to investigating these relationships is still very scarce. Here, we analysed 80 samples from 29 aquatic and semi-aquatic (hygrophytic) moss species living in Mediterranean springs to investigate the relationship between moss nutrient concentrations and their micro- and macroscopic morphological traits and growth forms. We found that, across species, the elemental concentration of mosses was more tightly linked to macroscopic traits than to microscopic traits. Growth forms could also be successfully explained by the concentration of elements in mosses. Apart from macronutrients and their stoichiometric ratios (C:N, C:P, and N:P), micronutrients and trace elements were also important variables predicting moss morphological traits and growth forms. Additionally, our results showed that microscopic traits were well related to macroscopic traits. Overall, our results clearly indicate that the elemental composition of mosses can be used to infer their morphological traits, and that elements other than macronutrients should be taken into account to achieve a good representation of their morphological and, potentially, functional traits when comparing the elemental composition across species.
Collapse
Affiliation(s)
- Marcos Fernández-Martínez
- Research Group PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium;
- Delegació de la Serralada Litoral Central, ICHN, 08302 Mataró, Catalonia, Spain; (J.C.); (O.C.-R.); (F.S.)
| | - Jordi Corbera
- Delegació de la Serralada Litoral Central, ICHN, 08302 Mataró, Catalonia, Spain; (J.C.); (O.C.-R.); (F.S.)
| | - Oriol Cano-Rocabayera
- Delegació de la Serralada Litoral Central, ICHN, 08302 Mataró, Catalonia, Spain; (J.C.); (O.C.-R.); (F.S.)
- Department of Ecology, University of Barcelona, 08028 Barcelona, Catalonia, Spain
| | - Francesc Sabater
- Delegació de la Serralada Litoral Central, ICHN, 08302 Mataró, Catalonia, Spain; (J.C.); (O.C.-R.); (F.S.)
- Department of Ecology, University of Barcelona, 08028 Barcelona, Catalonia, Spain
| | - Catherine Preece
- Research Group PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium;
- Delegació de la Serralada Litoral Central, ICHN, 08302 Mataró, Catalonia, Spain; (J.C.); (O.C.-R.); (F.S.)
| |
Collapse
|
16
|
Delgado-Baquerizo M, Eldridge DJ, Liu YR, Sokoya B, Wang JT, Hu HW, He JZ, Bastida F, Moreno JL, Bamigboye AR, Blanco-Pastor JL, Cano-Díaz C, Illán JG, Makhalanyane TP, Siebe C, Trivedi P, Zaady E, Verma JP, Wang L, Wang J, Grebenc T, Peñaloza-Bojacá GF, Nahberger TU, Teixido AL, Zhou XQ, Berdugo M, Duran J, Rodríguez A, Zhou X, Alfaro F, Abades S, Plaza C, Rey A, Singh BK, Tedersoo L, Fierer N. Global homogenization of the structure and function in the soil microbiome of urban greenspaces. Sci Adv 2021; 7:7/28/eabg5809. [PMID: 34244148 PMCID: PMC8270485 DOI: 10.1126/sciadv.abg5809] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 05/26/2021] [Indexed: 05/05/2023]
Abstract
The structure and function of the soil microbiome of urban greenspaces remain largely undetermined. We conducted a global field survey in urban greenspaces and neighboring natural ecosystems across 56 cities from six continents, and found that urban soils are important hotspots for soil bacterial, protist and functional gene diversity, but support highly homogenized microbial communities worldwide. Urban greenspaces had a greater proportion of fast-growing bacteria, algae, amoebae, and fungal pathogens, but a lower proportion of ectomycorrhizal fungi than natural ecosystems. These urban ecosystems also showed higher proportions of genes associated with human pathogens, greenhouse gas emissions, faster nutrient cycling, and more intense abiotic stress than natural environments. City affluence, management practices, and climate were fundamental drivers of urban soil communities. Our work paves the way toward a more comprehensive global-scale perspective on urban greenspaces, which is integral to managing the health of these ecosystems and the well-being of human populations.
Collapse
Affiliation(s)
- Manuel Delgado-Baquerizo
- Departamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, 41013 Sevilla, Spain.
| | - David J Eldridge
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Yu-Rong Liu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Blessing Sokoya
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA
| | - Jun-Tao Wang
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales 2751, Australia
| | - Hang-Wei Hu
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Science, Fujian Normal University, Fuzhou 350007, China
| | - Ji-Zheng He
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Science, Fujian Normal University, Fuzhou 350007, China
| | - Felipe Bastida
- CEBAS-CSIC, Department of Soil and Water Conservation, Campus Universitario de Espinardo, 30100, Murcia, Spain
| | - José L Moreno
- CEBAS-CSIC, Department of Soil and Water Conservation, Campus Universitario de Espinardo, 30100, Murcia, Spain
| | - Adebola R Bamigboye
- Natural History Museum (Botany Unit), Obafemi Awolowo University, Ile-Ife, Nigeria
| | | | - Concha Cano-Díaz
- Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, Móstoles 28933, Spain
| | - Javier G Illán
- Department of Entomology, Washington State University, Pullman, WA 99164, USA
| | - Thulani P Makhalanyane
- Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa
| | - Christina Siebe
- Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, México D.F. CP 04510, México
| | - Pankaj Trivedi
- Microbiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Eli Zaady
- Department of Natural Resources, Agricultural Research Organization, Institute of Plant Sciences, Gilat Research Center, Mobile Post Negev, Gilat 8531100, Israel
| | - Jay Prakash Verma
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005 Uttar Pradesh, India
| | - Ling Wang
- Institute of Grassland Science/School of Life Science, Northeast Normal University, and Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, Jilin 130024, China
| | - Jianyong Wang
- Institute of Grassland Science/School of Life Science, Northeast Normal University, and Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, Jilin 130024, China
| | - Tine Grebenc
- Department of Forest Physiology and Genetics, Slovenian Forestry Institute, Ljubljana, Slovenia
| | - Gabriel F Peñaloza-Bojacá
- Laboratório de Sistemática Vegetal, Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, 31270-901 MG, Brazil
| | - Tina U Nahberger
- Department of Forest Physiology and Genetics, Slovenian Forestry Institute, Ljubljana, Slovenia
| | - Alberto L Teixido
- Departamento de Botância e Ecologia, Instituto de Biociências, Universidade Federal de Mato Grosso, Av. Fernando Corrêa, 2367, Boa Esperança, Cuiabá, 78060-900 MT, Brazil
| | - Xin-Quan Zhou
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Miguel Berdugo
- Institut de Biologia Evolutiva (UPF-CSIC), 08003 Barcelona, Spain
- Institute of Integrative Biology, Department of Environment Systems Science, ETH Zurich, Univeritätstrasse 16, 8092 Zürich, Switzerland
| | - Jorge Duran
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3000-456 Coimbra, Portugal
| | - Alexandra Rodríguez
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3000-456 Coimbra, Portugal
| | - Xiaobing Zhou
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Fernando Alfaro
- GEMA Center for Genomics, Ecology and Environment, Faculty of Interdisciplinary Studies, Universidad Mayor, Santiago, Chile
- Instituto de Ecología y Biodiversidad (IEB), CP 7800003 Santiago, Chile
| | - Sebastian Abades
- Instituto de Ecología y Biodiversidad (IEB), CP 7800003 Santiago, Chile
| | - Cesar Plaza
- Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, Serrano 115 bis, 28006 Madrid, Spain
| | - Ana Rey
- Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, Serrano 115 bis, 28006 Madrid, Spain
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales 2751, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Penrith South DC, New South Wales 2751, Australia
| | - Leho Tedersoo
- Department of Mycology and Microbiology, University of Tartu, Ravila 14a, 50411 Tartu, Estonia
| | - Noah Fierer
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
| |
Collapse
|
17
|
Martin CA, Armstrong C, Illera JC, Emerson BC, Richardson DS, Spurgin LG. Genomic variation, population history and within-archipelago adaptation between island bird populations. R Soc Open Sci 2021; 8:201146. [PMID: 33972847 PMCID: PMC8074581 DOI: 10.1098/rsos.201146] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 01/11/2021] [Indexed: 05/13/2023]
Abstract
Oceanic island archipelagos provide excellent models to understand evolutionary processes. Colonization events and gene flow can interact with selection to shape genetic variation at different spatial scales. Landscape-scale variation in biotic and abiotic factors may drive fine-scale selection within islands, while long-term evolutionary processes may drive divergence between distantly related populations. Here, we examine patterns of population history and selection between recently diverged populations of the Berthelot's pipit (Anthus berthelotii), a passerine endemic to three North Atlantic archipelagos. First, we use demographic trees and f3 statistics to show that genome-wide divergence across the species range is largely shaped by colonization and bottlenecks, with evidence of very weak gene flow between populations. Then, using a genome scan approach, we identify signatures of divergent selection within archipelagos at single nucleotide polymorphisms (SNPs) in genes potentially associated with craniofacial development and DNA repair. We did not detect within-archipelago selection at the same SNPs as were detected previously at broader spatial scales between archipelagos, but did identify signatures of selection at loci associated with similar biological functions. These findings suggest that similar ecological factors may repeatedly drive selection between recently separated populations, as well as at broad spatial scales across varied landscapes.
Collapse
Affiliation(s)
- Claudia A. Martin
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Claire Armstrong
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
- NERC Biomolecular Analysis Facility, Department of Animal and Plant Sciences, University of Sheffield, Alfred Denny Building, Western Bank, Sheffield S10 2TN, UK
| | - Juan Carlos Illera
- Oviedo University, Campus of Mieres, Research Unit of Biodiversity (UO-CSIC-PA), Research Building, 5th floor, c/Gonzalo Gutiérrez Quirós, s/n, 33600 Mieres, Asturias, Spain
| | - Brent C. Emerson
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, 38206 La Laguna, Tenerife, Canary Islands, Spain
| | - David S. Richardson
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Lewis G. Spurgin
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| |
Collapse
|
18
|
Medina I, Vega-Trejo R, Wallenius T, Esquerré D, León C, Perez DM, Head ML. No link between nymph and adult coloration in shield bugs: weak selection by predators. Proc Biol Sci 2020; 287:20201011. [PMID: 32576112 PMCID: PMC7329039 DOI: 10.1098/rspb.2020.1011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 06/04/2020] [Indexed: 11/12/2022] Open
Abstract
Many organisms use different antipredator strategies throughout their life, but little is known about the reasons or implications of such changes. For years, it has been suggested that selection by predators should favour uniformity in local warning signals. If this is the case, we would expect high resemblance in colour across life stages in aposematic animals where young and adults share similar morphology and habitat. In this study, we used shield bugs (Hemiptera: Pentatomoidea) to test whether colour and colour diversity evolve similarly at different life stages. Since many of these bugs are considered to be aposematic, we also combined multi-species analyses with predation experiments on the cotton harlequin bug to test whether there is evidence of selection for uniformity in colour across life stages. Overall, we show that the diversity of colours used by both life stages is comparable, but adults are more cryptic than nymphs. We also demonstrate that nymphs and adults of the same species do not tend to look alike. Experiments on our model system suggest that predators can generalise among life stages that look different, and exhibit strong neophobia. Altogether, our results show no evidence of selection favouring colour similarity between adults and nymphs in this speciose clade.
Collapse
Affiliation(s)
- Iliana Medina
- School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia
| | | | - Thomas Wallenius
- Division of Ecology and Evolution, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Damien Esquerré
- Division of Ecology and Evolution, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Constanza León
- Division of Ecology and Evolution, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Daniela M. Perez
- Division of Ecology and Evolution, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Megan L. Head
- Division of Ecology and Evolution, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| |
Collapse
|
19
|
Senior VL, Evans LC, Leather SR, Oliver TH, Evans KL. Phenological responses in a sycamore-aphid-parasitoid system and consequences for aphid population dynamics: A 20 year case study. Glob Chang Biol 2020; 26:2814-2828. [PMID: 31985111 DOI: 10.1111/gcb.15015] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 12/06/2019] [Indexed: 05/24/2023]
Abstract
Species interactions have a spatiotemporal component driven by environmental cues, which if altered by climate change can drive shifts in community dynamics. There is insufficient understanding of the precise time windows during which inter-annual variation in weather drives phenological shifts and the consequences for mismatches between interacting species and resultant population dynamics-particularly for insects. We use a 20 year study on a tri-trophic system: sycamore Acer pseudoplatanus, two associated aphid species Drepanosiphum platanoidis and Periphyllus testudinaceus and their hymenopteran parasitoids. Using a sliding window approach, we assess climatic drivers of phenology in all three trophic levels. We quantify the magnitude of resultant trophic mismatches between aphids and their plant hosts and parasitoids, and then model the impacts of these mismatches, direct weather effects and density dependence on local-scale aphid population dynamics. Warmer temperatures in mid-March to late-April were associated with advanced sycamore budburst, parasitoid attack and (marginally) D. platanoidis emergence. The precise time window during which spring weather advances phenology varies considerably across each species. Crucially, warmer temperatures in late winter delayed the emergence of both aphid species. Seasonal variation in warming rates thus generates marked shifts in the relative timing of spring events across trophic levels and mismatches in the phenology of interacting species. Despite this, we found no evidence that aphid population growth rates were adversely impacted by the magnitude of mismatch with their host plants or parasitoids, or direct impacts of temperature and precipitation. Strong density dependence effects occurred in both aphid species and probably buffered populations, through density-dependent compensation, from adverse impacts of the marked inter-annual climatic variation that occurred during the study period. These findings explain the resilience of aphid populations to climate change and uncover a key mechanism, warmer winter temperatures delaying insect phenology, by which climate change drives asynchronous shifts between interacting species.
Collapse
Affiliation(s)
- Vicki L Senior
- Animal and Plant Sciences Department, University of Sheffield, Sheffield, UK
| | - Luke C Evans
- School of Biological Sciences, University of Reading, Reading, UK
| | - Simon R Leather
- Centre for Integrated Pest Management, Harper Adams University, Newport, UK
| | - Tom H Oliver
- School of Biological Sciences, University of Reading, Reading, UK
| | - Karl L Evans
- Animal and Plant Sciences Department, University of Sheffield, Sheffield, UK
| |
Collapse
|
20
|
Mohammed RS, King SD, Bentzen P, Marcogliese D, van Oosterhout C, Lighten J. Parasite diversity and ecology in a model species, the guppy ( Poecilia reticulata) in Trinidad. R Soc Open Sci 2020; 7:191112. [PMID: 32218941 PMCID: PMC7029902 DOI: 10.1098/rsos.191112] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 12/13/2019] [Indexed: 06/10/2023]
Abstract
The guppy (Poecilia reticulata) is a model species in ecology and evolution. Many studies have examined effects of predators on guppy behaviour, reproduction, survival strategies, feeding and other life-history traits, but few have studied variation in their parasite diversity. We surveyed parasites of 18 Trinidadian populations of guppy, to provide insight on the geographical mosaic of parasite variability, which may act as a source of natural selection acting on guppies. We found 21 parasite species, including five new records for Trinidad. Spatial variation in parasite diversity was significantly higher than that of piscine predators, and significant variation in parasite richness among individuals and populations was correlated with: (i) host size, (ii) snail species richness, and (iii) the distance between populations. Differences in parasite species richness are likely to play an important, yet underestimated role in the biology of this model species of vertebrate ecology and evolution.
Collapse
Affiliation(s)
- Ryan S. Mohammed
- Department of Life Sciences, The University of the West Indies, St Augustine, Trinidad and Tobago
| | - Stanley D. King
- Biology Department, Dalhousie University, 1355 Oxford Street, Halifax, Nova Scotia, Canada B3H4R2
| | - Paul Bentzen
- Biology Department, Dalhousie University, 1355 Oxford Street, Halifax, Nova Scotia, Canada B3H4R2
| | - David Marcogliese
- Environment and Climate Change Canada, St Lawrence Centre, 105 McGill, Montreal, Quebec, Canada HY2 2E7
- St Andrews Biological Station, Department of Fisheries and Oceans Canada, 125 Marine Science Drive, St Andrews, New Brunswick, Canada E5B 0E4
| | - Cock van Oosterhout
- School of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, UK
| | - Jackie Lighten
- Biosciences, University of Exeter, Stocker Road, Exeter EX4 4PY, UK
| |
Collapse
|
21
|
Craig CA, Thomson RL, Girardello M, Santangeli A. The drivers and extent of poison use by Namibia's communal farmers: Implications for averting the African vulture crisis. Ambio 2019; 48:913-922. [PMID: 30484066 PMCID: PMC6541661 DOI: 10.1007/s13280-018-1128-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Revised: 09/26/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
The use of poison by farmers to control livestock predators is a major threat to vulture populations across Eurasia and Africa. While there is now some understanding of poison use on freehold farmland regions in southern Africa, the prevalence and drivers of this practice are still unknown in communal farmlands. We surveyed 353 communal farmers in Namibia to assess the prevalence of reported poison use and intended poison use and the factors associated with both. We used the Randomised Response Technique, a method deemed to yield more robust estimates of the prevalence of sensitive behaviours compared to direct questioning. We found 1.7% of communal farmers admitted to using poison in the last year. Furthermore, across the study region, predicted poison use was the highest (up to 7%) in areas of the upper north-west. The identified 'hotspots' of poison use will assist conservation practitioners to focus their poison-mitigation efforts centred in the areas of the highest need.
Collapse
Affiliation(s)
- Christie A. Craig
- DST-NRF Centre of Excellence, FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| | - Robert L. Thomson
- DST-NRF Centre of Excellence, FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| | - Marco Girardello
- Azorean Biodiversity Group (cE3c), Universidade dos Açores, Dep. De Ciências Agrárias Rua Capitão João d’ Ávila, sn Pico da Urze, 9700-042 Angra do Heroísmo, Portugal
| | - Andrea Santangeli
- The Helsinki Lab of Ornithology, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| |
Collapse
|
22
|
Bodawatta KH, Poulsen M, Bos N. Foraging Macrotermes natalensis Fungus-Growing Termites Avoid a Mycopathogen but Not an Entomopathogen. Insects 2019; 10:E185. [PMID: 31247889 PMCID: PMC6681374 DOI: 10.3390/insects10070185] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 06/18/2019] [Accepted: 06/24/2019] [Indexed: 11/16/2022]
Abstract
Fungus-growing termites have to defend both themselves and their monoculture fungal cultivars from antagonistic microbes. One of the ways that pathogens can enter the termite colony is on the plant substrate that is collected by termite foragers. In order to understand whether foragers avoid substrate infected with antagonists, we offered sub-colonies of Macrotermes natalensis a choice between food exposed to either a mycopathogenic or an entomopathogenic fungus, and control food. Workers did not show any preference between entomopathogen-exposed and control substrate, but significantly avoided the mycopathogen-exposed substrate. This suggests that the behaviour of foraging workers is more strongly influenced by pathogens affecting their crop than those posing risks to the termite workers themselves.
Collapse
Affiliation(s)
- Kasun H Bodawatta
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, 2100 Copenhagen East, Denmark
- Natural History Museum of Denmark, University of Copenhagen, 2100 Copenhagen East, Denmark
| | - Michael Poulsen
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, 2100 Copenhagen East, Denmark.
| | - Nick Bos
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, 2100 Copenhagen East, Denmark
| |
Collapse
|
23
|
Cox F, Newsham KK, Robinson CH. Endemic and cosmopolitan fungal taxa exhibit differential abundances in total and active communities of Antarctic soils. Environ Microbiol 2019; 21:1586-1596. [PMID: 30652397 PMCID: PMC6850668 DOI: 10.1111/1462-2920.14533] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Accepted: 01/13/2019] [Indexed: 01/05/2023]
Abstract
Our understanding of the diversity and community dynamics of soil fungi has increased greatly through the use of DNA-based identification. Community characterization of metabolically active communities via RNA sequencing has previously revealed differences between 'active' and 'total' fungal communities, which may be influenced by the persistence of DNA from nonactive components. However, it is not known how fungal traits influence their prevalence in these contrasting community profiles. In this study, we coextracted DNA and RNA from soil collected from three Antarctic islands to test for differences between total and active soil fungal communities. By matching these geographically isolated fungi against a global dataset of soil fungi, we show that widely dispersed taxa are often more abundant in the total community, whilst taxa restricted to Antarctica are more likely to have higher abundance in the active community. In addition, we find that active communities have lower richness, and show a reduction in the abundance of the most dominant fungi, whilst there are consistent differences in the abundances of certain taxonomic groups between the total and active communities. These results suggest that the views of soil fungal communities offered by DNA- and RNA-based characterization differ in predictable ways.
Collapse
Affiliation(s)
- Filipa Cox
- School of Earth & Environmental Sciences, The University of Manchester, Manchester M13 9PL, UK
- NERC British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Kevin K Newsham
- NERC British Antarctic Survey, High Cross, Madingley Road, Cambridge CB3 0ET, UK
| | - Clare H Robinson
- School of Earth & Environmental Sciences, The University of Manchester, Manchester M13 9PL, UK
| |
Collapse
|
24
|
Abstract
BACKGROUND Everyday hundreds of people, mainly men, set out to take part in a vibrant artisanal capture fishing (ACF) industry on Lake Victoria. It is not known whether actions of artisanal fishers, in their unrelenting quest for existence, surpass ecosystems' sustainability thresholds with potentially negative repercussions on human health with respect to malaria transmission potential. This article sought to fill this information gap. METHODS This study used an ecosystem approach to find out how ACF processes facilitate the breeding of mosquitoes. The observational study adopted a cross-sectional design and was carried out on Mageta Island situated inside Lake Victoria in western Kenya. RESULTS Of the 87 mosquito larval habitats identified 27 (31%) were created through ACF activities. The ACF-related habitats, hereafter collectively referred to as 'fishing habitats', included fishing boats (24), trenches (1) and fish bait mines (2). About half (48%) of Anopheles larvae were recovered from fishing habitats. The mean larval density in the fishing habitats (35.7 ± 1.15) was double that in non-fishing habitats (17.4 ± 0.539). Despite being the most common 'non-fishing habitat' type (N = 32), the mean number of Anopheles larvae present in rock pools (30.81 ± 10.54) was significantly less than those found inside fishing boats (N = 24; 40.08 ± 10.16). Overall, man-made habitats and those used to support livelihoods contained significantly more Anopheles larvae. CONCLUSIONS These data show that artisanal capture fishing is a key driver of malaria epidemiology on Mageta Island. This suggests that larval source management strategies in the global south should pay attention to the heterogeneity in Anopheles breeding habitats created through livelihood activities.
Collapse
Affiliation(s)
- Wolfgang Richard Mukabana
- School of Biological Sciences, University of Nairobi, P.O. Box 30197-00100, Nairobi, Kenya.
- Science for Health, P.O. Box 44970-00100, Nairobi, Kenya.
| | - Janet Achieng Onyango
- School of Biological Sciences, University of Nairobi, P.O. Box 30197-00100, Nairobi, Kenya
- Science for Health, P.O. Box 44970-00100, Nairobi, Kenya
| | - Collins Kalwale Mweresa
- Science for Health, P.O. Box 44970-00100, Nairobi, Kenya
- School of Biological and Physical Sciences, Jaramogi Oginga Odinga University of Science and Technology, P.O. Box 210-40601, Bondo, Kenya
| |
Collapse
|
25
|
Hooper R, Brealey JC, van der Valk T, Alberdi A, Durban JW, Fearnbach H, Robertson KM, Baird RW, Bradley Hanson M, Wade P, Gilbert MTP, Morin PA, Wolf JBW, Foote AD, Guschanski K. Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. Mol Ecol 2019; 28:484-502. [PMID: 30187987 PMCID: PMC6487819 DOI: 10.1111/mec.14860] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 08/15/2018] [Accepted: 08/27/2018] [Indexed: 12/20/2022]
Abstract
Recent exploration into the interactions and relationship between hosts and their microbiota has revealed a connection between many aspects of the host's biology, health and associated micro-organisms. Whereas amplicon sequencing has traditionally been used to characterize the microbiome, the increasing number of published population genomics data sets offers an underexploited opportunity to study microbial profiles from the host shotgun sequencing data. Here, we use sequence data originally generated from killer whale Orcinus orca skin biopsies for population genomics, to characterize the skin microbiome and investigate how host social and geographical factors influence the microbial community composition. Having identified 845 microbial taxa from 2.4 million reads that did not map to the killer whale reference genome, we found that both ecotypic and geographical factors influence community composition of killer whale skin microbiomes. Furthermore, we uncovered key taxa that drive the microbiome community composition and showed that they are embedded in unique networks, one of which is tentatively linked to diatom presence and poor skin condition. Community composition differed between Antarctic killer whales with and without diatom coverage, suggesting that the previously reported episodic migrations of Antarctic killer whales to warmer waters associated with skin turnover may control the effects of potentially pathogenic bacteria such as Tenacibaculum dicentrarchi. Our work demonstrates the feasibility of microbiome studies from host shotgun sequencing data and highlights the importance of metagenomics in understanding the relationship between host and microbial ecology.
Collapse
Affiliation(s)
- Rebecca Hooper
- Animal EcologyDepartment of Ecology and GeneticsEvolutionary Biology CentreUppsala UniversityUppsalaSweden
| | - Jaelle C. Brealey
- Animal EcologyDepartment of Ecology and GeneticsEvolutionary Biology CentreUppsala UniversityUppsalaSweden
| | - Tom van der Valk
- Animal EcologyDepartment of Ecology and GeneticsEvolutionary Biology CentreUppsala UniversityUppsalaSweden
| | - Antton Alberdi
- Centre for GeoGeneticsNatural History Museum of DenmarkUniversity of CopenhagenCopenhagen KDenmark
| | - John W. Durban
- Marine Mammal and Turtle DivisionSouthwest Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationLa JollaCalifornia
| | - Holly Fearnbach
- SR3, SeaLife Response, Rehabilitation, and ResearchSeattleWashington
| | - Kelly M. Robertson
- Marine Mammal and Turtle DivisionSouthwest Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationLa JollaCalifornia
| | | | - M. Bradley Hanson
- Northwest Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashington
| | - Paul Wade
- National Marine Mammal LaboratoryAlaska Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashington
| | - M. Thomas P. Gilbert
- Centre for GeoGeneticsNatural History Museum of DenmarkUniversity of CopenhagenCopenhagen KDenmark
- NTNU University MuseumTrondheimNorway
| | - Phillip A. Morin
- Marine Mammal and Turtle DivisionSouthwest Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationLa JollaCalifornia
| | - Jochen B. W. Wolf
- Science of Life Laboratories and Department of Evolutionary BiologyEvolutionary Biology CentreUppsala UniversityUppsalaSweden
- Section of Evolutionary BiologyFaculty of BiologyLMU MunichMunichGermany
| | - Andrew D. Foote
- Molecular Ecology and Fisheries Genetics LaboratorySchool of Biological SciencesBangor UniversityBangorGwyneddUK
| | - Katerina Guschanski
- Animal EcologyDepartment of Ecology and GeneticsEvolutionary Biology CentreUppsala UniversityUppsalaSweden
| |
Collapse
|
26
|
Fry EL, Evans AL, Sturrock CJ, Bullock JM, Bardgett RD. Root architecture governs plasticity in response to drought. Plant Soil 2018; 433:189-200. [PMID: 30930495 PMCID: PMC6406839 DOI: 10.1007/s11104-018-3824-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 09/17/2018] [Indexed: 05/13/2023]
Abstract
AIMS Root characteristics are important for predicting plant and ecosystem responses to resource scarcity. Simple, categorical traits for roots could be broadly applied to ecosystem function and restoration experiments, but they need to be evaluated for their role and behaviour under various stresses, including water limitation. We hypothesised that more complex root architectures allow more plastic responses to limited water than do tap roots. METHODS We carried out two greenhouse experiments: one with a range of grassland plant species; the other with only species of Asteraceae to test the responsiveness of root architectural classes to location of limited water in the soil column. Using trait screening techniques and X-ray tomography, we measured the plasticity of the roots in response to water location. RESULTS Plasticity of root biomass was lowest in tap rooted species, while fibrous and rhizomatous roots allocated biomass preferentially to where the soil was wettest. X-ray tomography indicated that root morphology was least plastic in rhizomatous species. CONCLUSIONS Our results provide a starting point to effective categorisation of plants in terms of rooting architecture that could aid in understanding drought tolerance of grassland species. They also demonstrate the utility of X-ray tomography in root analyses.
Collapse
Affiliation(s)
- Ellen L. Fry
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT UK
| | - Amy L. Evans
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT UK
| | - Craig J. Sturrock
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD UK
| | - James M. Bullock
- NERC Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB UK
| | - Richard D. Bardgett
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT UK
| |
Collapse
|
27
|
Greggor AL, McIvor GE, Clayton NS, Thornton A. Wild jackdaws are wary of objects that violate expectations of animacy. R Soc Open Sci 2018; 5:181070. [PMID: 30473852 PMCID: PMC6227974 DOI: 10.1098/rsos.181070] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Accepted: 09/24/2018] [Indexed: 05/10/2023]
Abstract
Nature is composed of self-propelled, animate agents and inanimate objects. Laboratory studies have shown that human infants and a few species discriminate between animate and inanimate objects. This ability is assumed to have evolved to support social cognition and filial imprinting, but its ecological role for wild animals has never been examined. An alternative, functional explanation is that discriminating stimuli based on their potential for animacy helps animals distinguish between harmless and threatening stimuli. Using remote-controlled experimental stimulus presentations, we tested if wild jackdaws (Corvus monedula) respond fearfully to stimuli that violate expectations for movement. Breeding pairs (N = 27) were presented at their nests with moving and non-moving models of ecologically relevant stimuli (birds, snakes and sticks) that differed in threat level and propensity for independent motion. Jackdaws were startled by movement regardless of stimulus type and produced more alarm calls when faced with animate objects. However, they delayed longest in entering their nest-box after encountering a stimulus that should not move independently, suggesting they recognized the movement as unexpected. How jackdaws develop expectations about object movement is not clear, but our results suggest that discriminating between animate and inanimate stimuli may trigger information gathering about potential threats.
Collapse
Affiliation(s)
- Alison L. Greggor
- Department of Psychology, University of Cambridge, Cambridge CB2 3EB, UK
- Institute for Conservation Research, San Diego Zoo Global, Escondido, CA 92027, USA
- Author for correspondence: Alison L. Greggor e-mail:
| | - Guillam E. McIvor
- Centre for Ecology and Conservation, University of Exeter, Penryn TR10 9FE, UK
| | - Nicola S. Clayton
- Department of Psychology, University of Cambridge, Cambridge CB2 3EB, UK
| | - Alex Thornton
- Centre for Ecology and Conservation, University of Exeter, Penryn TR10 9FE, UK
- Author for correspondence: Alex Thornton e-mail:
| |
Collapse
|
28
|
Zinner D, Atickem A, Beehner JC, Bekele A, Bergman TJ, Burke R, Dolotovskaya S, Fashing PJ, Gippoliti S, Knauf S, Knauf Y, Mekonnen A, Moges A, Nguyen N, Stenseth NC, Roos C. Phylogeography, mitochondrial DNA diversity, and demographic history of geladas (Theropithecus gelada). PLoS One 2018; 13:e0202303. [PMID: 30138418 PMCID: PMC6107150 DOI: 10.1371/journal.pone.0202303] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 07/31/2018] [Indexed: 11/18/2022] Open
Abstract
The large-bodied, terrestrial primates in the tribe Papionini are among the most intensely studied animals in the world, yet for some members of this tribe we know comparatively little about their evolutionary history and phylogeography. Geladas (Theropithecus gelada Rüppell, 1835), endemic primates of the Ethiopian highlands, are largely unstudied both in genetic diversity and intrageneric phylogeny. Currently, a northern and central subspecies and one isolated southern population are recognized, of which the central is classified as Least Concern, the northern as Vulnerable, and the southern is not yet assessed. The distribution and taxonomy of the subspecies remain poorly defined. Here, we estimate the mitochondrial DNA (mtDNA) diversity and phylogenetic relationships among gelada mtDNA lineages based on samples across the entire species range. We analysed 1.7 kb-long sequences of the mtDNA genome, spanning the cytochrome b gene and the hypervariable region I of the D-loop, derived from 162 faecal samples. We detected five major haplogroups or clades (south, central-1, central-2, north-1, north-2) which diverged between 0.67 and 0.43 million years ago, thus suggesting a rapid radiation, resulting in largely unresolved intrageneric phylogenetic relationships. Both, the northern and central demes contain two similarly valid haplogroups, each with little or no geographic segregation among respective haplogroups. Effective population sizes of the northern and central demes decreased during and after the last glacial maximum but remained stable for the southern deme, although on a very low level. The distribution of haplogroups within the geographic ranges of the putative gelada subspecies indicates that mtDNA sequence information does not allow reliable taxonomic inferences and thus is not sufficient for solving the taxonomic rank of the three demic populations, with the possible exception of the southern population. Nevertheless, due to the genetic differences all three populations deserve conservation efforts, in particular the smallest southern population.
Collapse
Affiliation(s)
- Dietmar Zinner
- Cognitive Ethology Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- * E-mail: (DZ); (CR)
| | - Anagaw Atickem
- Cognitive Ethology Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Jacinta C. Beehner
- Department of Psychology, University of Michigan, Ann Arbor, MI, United States of America
- Department of Anthropology, University of Michigan, Ann Arbor, MI, United States of America
| | - Afework Bekele
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Thore J. Bergman
- Department of Psychology, University of Michigan, Ann Arbor, MI, United States of America
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, United States of America
| | - Ryan Burke
- Long-Term Ecology Laboratory, Department of Zoology, University of Oxford, Oxford, United Kingdom
| | - Sofya Dolotovskaya
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Peter J. Fashing
- Department of Anthropology & Environmental Studies Program, California State University Fullerton, Fullerton, CA, United States of America
| | - Spartaco Gippoliti
- Società Italiana per la Storia della Fauna “G. Altobello”, Viale Liegi 48A, Roma, Italy
| | - Sascha Knauf
- Work Group Neglected Tropical Diseases, Infection Biology Unit, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
| | - Yvonne Knauf
- Work Group Neglected Tropical Diseases, Infection Biology Unit, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Department of Animal Sciences, University of Göttingen, Burckhardtweg 2, Göttingen, Germany
| | - Addisu Mekonnen
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, Oslo, Norway
| | - Amera Moges
- Department of Biology, College of Natural Sciences, Bahir Dar University, Bahir Dar, Ethiopia
| | - Nga Nguyen
- Department of Anthropology & Environmental Studies Program, California State University Fullerton, Fullerton, CA, United States of America
| | - Nils Chr. Stenseth
- Department of Zoological Sciences, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, Oslo, Norway
| | - Christian Roos
- Primate Genetics Laboratory, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- Gene Bank of Primates, German Primate Center (DPZ), Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen, Germany
- * E-mail: (DZ); (CR)
| |
Collapse
|
29
|
Thorley J, Katlein N, Goddard K, Zöttl M, Clutton-Brock T. Reproduction triggers adaptive increases in body size in female mole-rats. Proc Biol Sci 2018; 285:20180897. [PMID: 29875307 PMCID: PMC6015866 DOI: 10.1098/rspb.2018.0897] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 05/11/2018] [Indexed: 11/12/2022] Open
Abstract
In social mole-rats, breeding females are larger and more elongated than non-breeding female helpers. This status-related morphological divergence is thought to arise from modifications of skeletal growth following the death or removal of the previous breeder and the transition of their successors from a non-breeding to a breeding role. However, it is not clear what changes in growth are involved, whether they are stimulated by the relaxation of reproductive suppression or by changes in breeding status, or whether they are associated with fecundity increases. Here, we show that, in captive Damaraland mole-rats (Fukomys damarensis), where breeding was experimentally controlled in age-matched siblings, individuals changed in size and shape through a lengthening of the lumbar vertebrae when they began breeding. This skeletal remodelling results from changes in breeding status because (i) females removed from a group setting and placed solitarily showed no increases in growth and (ii) females dispersing from natural groups that have not yet bred do not differ in size and shape from helpers in established groups. Growth patterns consequently resemble other social vertebrates where contrasts in size and shape follow the acquisition of the breeding role. Our results also suggest that the increases in female body size provide fecundity benefits. Similar forms of socially responsive growth might be more prevalent in vertebrates than is currently recognized, but the extent to which this is the case, and the implications for the structuring of mammalian dominance hierarchies, are as yet poorly understood.
Collapse
Affiliation(s)
- Jack Thorley
- Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
- Kalahari Research Centre, Kuruman River Reserve, PO Box 64, Van Zylsrus, South Africa
| | - Nathan Katlein
- Kalahari Research Centre, Kuruman River Reserve, PO Box 64, Van Zylsrus, South Africa
| | - Katy Goddard
- Kalahari Research Centre, Kuruman River Reserve, PO Box 64, Van Zylsrus, South Africa
| | - Markus Zöttl
- Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
- Kalahari Research Centre, Kuruman River Reserve, PO Box 64, Van Zylsrus, South Africa
- Ecology and Evolution in Microbial Model Systems, EEMiS, Department of Biology and Environmental Science, Linnaeus University, 391 Kalmar, Sweden
| | - Tim Clutton-Brock
- Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
- Kalahari Research Centre, Kuruman River Reserve, PO Box 64, Van Zylsrus, South Africa
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, 0028 Pretoria, South Africa
| |
Collapse
|
30
|
Grant RA, Breakell V, Prescott TJ. Whisker touch sensing guides locomotion in small, quadrupedal mammals. Proc Biol Sci 2018; 285:20180592. [PMID: 29899069 PMCID: PMC6015872 DOI: 10.1098/rspb.2018.0592] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 05/18/2018] [Indexed: 01/26/2023] Open
Abstract
All small mammals have prominent facial whiskers that they employ as tactile sensors to guide navigation and foraging in complex habitats. Nocturnal, arboreal mammals tend to have the longest and most densely packed whiskers, and semi-aquatic mammals have the most sensitive. Here we present evidence to indicate that many small mammals use their whiskers to tactually guide safe foot positioning. Specifically, in 11, small, non-flying mammal species, we demonstrate that forepaw placement always falls within the ground contact zone of the whisker field and that forepaw width is always smaller than whisker span. We also demonstrate commonalities of whisker scanning movements (whisking) and elements of active control, associated with increasing contact with objects of interest, across multiple small mammal species that have previously only been shown in common laboratory animals. Overall, we propose that guiding locomotion, alongside environment exploration, is a common function of whisker touch sensing in small, quadrupedal mammals.
Collapse
Affiliation(s)
- Robyn A Grant
- Division of Biology and Conservation Ecology, Manchester Metropolitan University, Manchester, UK
| | | | - Tony J Prescott
- Department of Computer Science, University of Sheffield, Sheffield, UK
| |
Collapse
|
31
|
Jacobs DS, Catto S, Mutumi GL, Finger N, Webala PW. Testing the Sensory Drive Hypothesis: Geographic variation in echolocation frequencies of Geoffroy's horseshoe bat (Rhinolophidae: Rhinolophus clivosus). PLoS One 2017; 12:e0187769. [PMID: 29186147 PMCID: PMC5706677 DOI: 10.1371/journal.pone.0187769] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Accepted: 10/25/2017] [Indexed: 12/14/2022] Open
Abstract
Geographic variation in sensory traits is usually influenced by adaptive processes because these traits are involved in crucial life-history aspects including orientation, communication, lineage recognition and mate choice. Studying this variation can therefore provide insights into lineage diversification. According to the Sensory Drive Hypothesis, lineage diversification may be driven by adaptation of sensory systems to local environments. It predicts that acoustic signals vary in association with local climatic conditions so that atmospheric attenuation is minimized and transmission of the signals maximized. To test this prediction, we investigated the influence of climatic factors (specifically relative humidity and temperature) on geographic variation in the resting frequencies of the echolocation pulses of Geoffroy's horseshoe bat, Rhinolophus clivosus. If the evolution of phenotypic variation in this lineage tracks climate variation, human induced climate change may lead to decreases in detection volumes and a reduction in foraging efficiency. A complex non-linear interaction between relative humidity and temperature affects atmospheric attenuation of sound and principal components composed of these correlated variables were, therefore, used in a linear mixed effects model to assess their contribution to observed variation in resting frequencies. A principal component composed predominantly of mean annual temperature (factor loading of -0.8455) significantly explained a proportion of the variation in resting frequency across sites (P < 0.05). Specifically, at higher relative humidity (around 60%) prevalent across the distribution of R. clivosus, increasing temperature had a strong negative effect on resting frequency. Climatic factors thus strongly influence acoustic signal divergence in this lineage, supporting the prediction of the Sensory Drive Hypothesis. The predicted future increase in temperature due to climate change is likely to decrease the detection volume in echolocating bats and adversely impact their foraging efficiency.
Collapse
Affiliation(s)
- David S. Jacobs
- University of Cape Town, Department of Biological Sciences, Rondebosch, Cape Town, South Africa
| | - Sarah Catto
- University of Cape Town, Department of Biological Sciences, Rondebosch, Cape Town, South Africa
| | - Gregory L. Mutumi
- University of Cape Town, Department of Biological Sciences, Rondebosch, Cape Town, South Africa
| | - Nikita Finger
- University of Cape Town, Department of Biological Sciences, Rondebosch, Cape Town, South Africa
| | - Paul W. Webala
- Maasai Mara University, Department of Forestry and Wildlife Management, Narok, Kenya
| |
Collapse
|
32
|
Wilson-Brodie RJ, MacLean MA, Fenberg PB. Historical shell size reduction of the dogwhelk ( Nucella lapillus) across the southern UK. Mar Biol 2017; 164:190. [PMID: 28959077 PMCID: PMC5577049 DOI: 10.1007/s00227-017-3217-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 08/09/2017] [Indexed: 06/07/2023]
Abstract
Body size reduction is predicted to be one of the most common ecological responses to climate change, yet examples within some taxonomic groups, such as marine molluscs, are rare. Here, we document a significant reduction in shell size of the rocky shore gastropod Nucella lapillus across the southern UK using natural history collections and modern field data. These results are correlated with temporal changes in sea-surface temperature from a long-term monitoring station. The maximum height of N. lapillus shells has declined by approximately 18 mm over the past 100 years, and the median size of shells in large size classes declined by 6 mm during this time. Individuals are, on average, larger in the west than in the east, which is noted using both modern and historical samples. In some locations, there has been a local extinction of N. lapillus, potentially due to combined negative impacts of climate warming and TBT pollution. Our results further demonstrate the utility of natural history collections, paired with modern field sampling, to document biological response to climate change and other human impacts.
Collapse
Affiliation(s)
- Rebecca J. Wilson-Brodie
- Ocean and Earth Science, National Oceanography Centre, University of Southampton, Southampton, SO14 3ZH UK
- Department of Life Sciences, The Natural History Museum, London, SW7 5BD UK
| | - Moira A. MacLean
- Ocean and Earth Science, National Oceanography Centre, University of Southampton, Southampton, SO14 3ZH UK
| | - Phillip B. Fenberg
- Ocean and Earth Science, National Oceanography Centre, University of Southampton, Southampton, SO14 3ZH UK
- Department of Life Sciences, The Natural History Museum, London, SW7 5BD UK
| |
Collapse
|
33
|
Fox CW, Albert AYK, Vines TH. Recruitment of reviewers is becoming harder at some journals: a test of the influence of reviewer fatigue at six journals in ecology and evolution. Res Integr Peer Rev 2017; 2:3. [PMID: 29451533 PMCID: PMC5803623 DOI: 10.1186/s41073-017-0027-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Accepted: 02/04/2017] [Indexed: 11/11/2022] Open
Abstract
BACKGROUND It is commonly reported by editors that it has become harder to recruit reviewers for peer review and that this is because individuals are being asked to review too often and are experiencing reviewer fatigue. However, evidence supporting these arguments is largely anecdotal. MAIN BODY We examine responses of individuals to review invitations for six journals in ecology and evolution. The proportion of invitations that lead to a submitted review has been decreasing steadily over 13 years (2003-2015) for four of the six journals examined, with a cumulative effect that has been quite substantial (average decline from 56% of review invitations generating a review in 2003 to just 37% in 2015). The likelihood that an invitee agrees to review declines significantly with the number of invitations they receive in a year. However, the average number of invitations being sent to prospective reviewers and the proportion of individuals being invited more than once per year has not changed much over these 13 years, despite substantial increases in the total number of review invitations being sent by these journals-the reviewer base has expanded concomitant with this growth in review requests. CONCLUSIONS The proportion of review invitations that lead to a review being submitted has been declining steadily for four of the six journals examined here, but reviewer fatigue is not likely the primary explanation for this decline.
Collapse
Affiliation(s)
- Charles W. Fox
- Department of Entomology, University of Kentucky, Lexington, KY 40546-0091 USA
| | - Arianne Y. K. Albert
- Women’s Health Research Institute, BC Women’s Hospital and Health Centre, Vancouver, British Columbia V6H 3N1 Canada
| | - Timothy H. Vines
- Axios Review Editorial Office, 4521 John Street, Vancouver, British Columbia V5V 3X3 Canada
| |
Collapse
|
34
|
Abstract
Stability is a desirable property of complex ecosystems. If a community of interacting species is at a stable equilibrium point then it is able to withstand small perturbations to component species' abundances without suffering adverse effects. In ecology, the Jacobian matrix evaluated at an equilibrium point is known as the community matrix, which describes the population dynamics of interacting species. A system's asymptotic short- and long-term behaviour can be determined from eigenvalues derived from the community matrix. Here we use results from the theory of pseudospectra to describe intermediate, transient dynamics. We first recover the established result that the transition from stable to unstable dynamics includes a region of 'transient instability', where the effect of a small perturbation to species' abundances-to the population vector-is amplified before ultimately decaying. Then we show that the shift from stability to transient instability can be affected by uncertainty in, or small changes to, entries in the community matrix, and determine lower and upper bounds to the maximum amplitude of perturbations to the population vector. Of five different types of community matrix, we find that amplification is least severe when predator-prey interactions dominate. This analysis is relevant to other systems whose dynamics can be expressed in terms of the Jacobian matrix.
Collapse
Affiliation(s)
- Francesco Caravelli
- Invenia Labs, 27 Parkside Place, Cambridge, CB1 1HQ, United Kingdom
- London Institute of Mathematical Sciences, 35a South Street, London, W1K 2XF, United Kingdom
- Department of Computer Science, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Phillip P. A. Staniczenko
- Department of Biology, University of Maryland, College Park, Maryland, MD 20742, United States of America
- National Socio-Environmental Synthesis Center (SESYNC), Annapolis, MD 21401, United States of America
| |
Collapse
|