Molecular characterization of atrazine resistance in common ragweed (Ambrosia artemisiifolia L.)

Reduced Invasiveness of Common Ragweed (Ambrosia artemisiifolia) Using Low-Dose Herbicide Treatments for High-Efficiency and Eco-Friendly Control

Common ragweed (Ambrosia artemisiifolia) is an invasive annual weed that invades heavily disturbed habitats and natural habitats less disturbed by human activities with native plant species in need of protection. Achieving effective control of A. artemisiifolia for the protection of native organisms and the local ecological environment is an ongoing challenge. Based on the growth and development characteristics of A. artemisiifolia, we examined the effectiveness of herbicides in controlling this species and the optimal time for application in the field with the aim of reducing herbicide dosage. Additionally, we analyzed whether the efficiency of low-dose applications for controlling this species might improve with increasing native plant species richness. Our findings indicate that aminopyralid (33 g ai ha^-1) was the most suitable herbicide for chemical control of A. artemisiifolia, with optimum application time being during vegetative growth (BBCH 32-35). Application of aminopyralid was found to kill approximately 52% of A. artemisiifolia plants, and more than 75% of the surviving plants did not bloom, thereby reducing seed yield of the population by more than 90%. Compared with the application of high-dose herbicide, the phytotoxicity of aminopyralid to native plants at the applied dose was substantially reduced. After 2 years of application, the relative coverage of A. artemisiifolia significantly decreased, with few plants remaining, whereas the relative coverage of native plants more than doubled, representing an eco-friendly control. Further, there was an increase in the A. artemisiifolia control rate in the plant community with higher native plant species richness at the same herbicide rates and a reduction in seed yield of A. artemisiifolia. Our findings help toward developing control measures to reduce the invasiveness of A. artemisiifolia with low-dose herbicides meanwhile protecting native plants, and then using the species richness of native plant communities to indirectly promote the effectiveness of low-dose herbicide application.

Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida, Asteraceae) From a Herbarium Specimen

We report the first plastome sequence of giant ragweed (Ambrosia trifida); with this new genome information, we assessed the phylogeny of Asteraceae and the transcriptional profiling against glyphosate resistance in giant ragweed. Assembly and genic features show a normal angiosperm quadripartite plastome structure with no signatures of deviation in gene directionality. Comparative analysis revealed large inversions across the plastome of giant ragweed and the previously sequenced members of the plant family. Asteraceae plastid genomes contain two inversions of 22.8 and 3.3 kb; the former is located between trnS-GCU and trnG-UCC genes, and the latter between trnE-UUC and trnT-GGU genes. The plastid genome sequences of A. trifida and the related species, Ambrosia artemisiifolia, are identical in gene content and arrangement, but they differ in length. The phylogeny is well-resolved and congruent with previous hypotheses about the phylogenetic relationship of Asteraceae. Transcriptomic analysis revealed divergence in the relative expressions at the exonic and intronic levels, providing hints toward the ecological adaptation of the genus. Giant ragweed shows various levels of glyphosate resistance, with introns displaying higher expression patterns at resistant time points after the assumed herbicide treatment.

Heteroplasmy and atrazine resistance in Chenopodium album and Senecio vulgaris

Atrazine-resistant weeds are well known, and the resistance is primarily caused by a point mutation in the psbA chloroplast gene encoding the photosystem II D1 protein. Heteroplasmy, the presence of different types of chloroplasts in an individual plant, is also very common. Thus, atrazine-resistant weeds may also partly possess the atrazine-binding sequence and vice versa. The region of the psbA gene containing the mutation was sequenced from atrazine-resistant and atrazine-sensitive Chenopodium album and Senecio vulgaris plants. In atrazine-sensitive C. album plants, the expected AGT triplet was found. The atrazine-resistant plants contained the expected base substitution (AGT to GGT); however, in addition the AGT triplet was found. The atrazine-resistant S. vulgaris plants contained the expected GGT sequence, whereas the atrazine-sensitive plants contained both the AGT and GGT sequences. This clearly indicates that in addition to Gly264 also Ser264 is present in atrazine-resistant plants, and vice versa in atrazine-sensitive plants, indicating heteroplasmy in these weeds.

The geographic mosaic of herbicide resistance evolution in the common morning glory, Ipomoea purpurea: Evidence for resistance hotspots and low genetic differentiation across the landscape

Strong human-mediated selection via herbicide application in agroecosystems has repeatedly led to the evolution of resistance in weedy plants. Although resistance can occur among separate populations of a species across the landscape, the spatial scale of resistance in many weeds is often left unexamined. We assessed the potential that resistance to the herbicide glyphosate in the agricultural weed Ipomoea purpurea has evolved independently multiple times across its North American range. We examined both adaptive and neutral genetic variations in 44 populations of I. purpurea by pairing a replicated dose–response greenhouse experiment with SSR genotyping of experimental individuals. We uncovered a mosaic pattern of resistance across the landscape, with some populations exhibiting high-survival postherbicide and other populations showing high death. SSR genotyping revealed little evidence of isolation by distance and very little neutral genetic structure associated with geography. An approximate Bayesian computation (ABC) analysis uncovered evidence for migration and admixture among populations before the widespread use of glyphosate rather than the very recent contemporary gene flow. The pattern of adaptive and neutral genetic variations indicates that resistance in this mixed-mating weed species appears to have evolved in independent hotspots rather than through transmission of resistance alleles across the landscape.

Development of a simple PCR-based assay for the identification of triazine resistance in the noxious plant common ragweed (Ambrosia artemisiifolia) and its applicability in higher plants

Bidirectional allele-specific PCR (Bi-PASA) was used to detect a point mutation causing triazine resistance in common ragweed (Ambrosia artemisiifolia). The external primers amplified a 278 bp standard DNA fragment in all genotypes. In the susceptible S264S genotypes, a 208 bp fragment was expected while in resistant S264G common ragweed genotypes a 109 bp band was expected. In resistant plants, both the wild and mutant type fragments were detected, indicating that the original triazine sensitive cpDNA is maintained in a heteroplasmic state in the resistant S264G genotypes. Additionally, in silico analysis confirmed the potential applicability of our diagnostic assay for other plant species. In 24 out of 74 taxa (32%), the assay could be used without any change, while in the others some of the primers should be redesigned before use.