Cationic cyanine as a near-infrared fluorescent probe for the determination of nucleic acids

The fluorescence enhancement of quercetin-nucleic acid system and the analytical application

Nucleic acid can greatly enhance the fluorescence intensity of quercetin in HMTA-HCl (pH 5.5) buffer. The enhanced intensity is in proportion to the concentration of nucleic acids in the range 5.0 x 10(-9) to 1.0 x 10(-6) g/mL for fsDNA, 5.0 x 10(-9) to 7.0 x 10(-7) g/mL for ctDNA and 5.0 x 10(-9) to 1.0 x 10(-6) g/mL for yRNA, and their detection limits (S/N = 3) are 3.5 x 10(-9), 7.8 x 10(-10) and 2.6 x 10(-9) g/mL, respectively. In comparison with most reported fluorescent probes for the determination of nucleic acids, the proposed probe has higher sensitivity and lower toxicity. The interaction investigation indicates that quercetin binds with double-strand DNA in groove binding mode, resulting in fluorescence enhancement of this system.

High sensitive fluorophotometric determination of nucleic acids with Pyronine G sensitized by N,N-dimethylformamide

In Tris-HCl buffer (pH 8.0), the fluorescence of Pyronine G emitted at 552 nm was quenched by nucleic acids when excited at 525 nm. Adding N, N-dimethylformamide (DMF) as a sensitive media can enhance the sensitivity greatly. Based on the fluorescence reactions sensitive fluorimetric methods for nucleic acids at nanogram levels were proposed. Under the optimum conditions, the calibration curves were linear in the range of 0.0032 - 2.5 microg mL(-1) for ct DNA and 0.0024 - 2.5 microg mL(-1) for hs DNA. The limits of determination were 3.2 ng mL(-1) and 2.4 ng mL(-1) respectively. This method has good selectivity and high sensitivity. It has been applied to the determination of DNA in the synthetic samples and real samples with satisfactory results.

Species-differentiable sensing of phosphate-containing anions in neutral aqueous solution based on coordinatively unsaturated lanthanide complex probes

A new chromogenic/fluorogenic molecular probe was developed for highly selective and species-differentiable detection of phosphate-containing anions in neutral aqueous solution. The coordinatively unsaturated lanthanide complex, made from Eu(III) ion and 2-[(8-hydroxy-5-sulfo-7-quinoline)azo]-1,8-dihydroxy-3,6-naphthalene disulfonic acid, changed its conformation when binding to the incoming target anions, which resulted in differential absorption or fluorescence responses. It was demonstrated that not only phosphate and pyrophosphate but also DNA and RNA could be clearly distinguished by visible absorption or fluorescence spectra. Also, differential responses in absorption spectra were observed when AMP, ADP, and ATP were added into the sensing system. Selective quantitation of these phosphate-containing anions in aqueous solutions, therefore, can be easily available. DNA and RNA were distinguished by different colors and independent fluorescence emissions due to their intrinsic differences in beta-D-ribose residues. Simultaneous or independent quantitation of DNA and RNA in a mixture sample, therefore, is possible without pretreatment with nuclease. Furthermore, the influence from the base selectivity can be eliminated by the use of the probe. The detection limits of phosphate and 5'-ATP in neutral water were 6.0 x 10(-7) and 9.0 x 10(-7)M, respectively, by the UV/Vis spectrophotometric method; the detection limits were 12.3 ng/mL for DNA by fluorimetry and 2.3mg/L for RNA by UV/Vis spectrophotometry.

Determination of Nucleic Acids by Near-Infrared Fluorescence Quenching of Hydrophobic Thiacyanine Dye in the Presence of Triton X-100

A near-infrared (near-IR) fluorescence quenching method was developed for the determination of nucleic acids in aqueous solution by using a cationic heptamethylene thiacyanine as a probe. The near-IR cationic cyanine showed maximum excitation and emission wavelengths at 800 and 825 nm, respectively, in the presence of Triton X-100; the fluorescence of the cyanine could be greatly quenched by DNA. The calibration graphs were linear over the range of 10-400 ng/mL for CT (calf thymus) DNA and over the range 5-400 ng/mL for FS (fish sperm) DNA under optimal conditions. The corresponding detection limits were 5.2 ng/mL for CT DNA and 2.5 ng/mL for FS DNA. The relative standard deviation (n = 8) was 3.1% for 75 ng/mL CT DNA and 2.2% for 75 ng/mL FS DNA, respectively. Preliminary research showed that the fluorescence quenching might be ascribed to the formation of dye aggregate facilitated by DNA.