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For: Higgs PG. Chemical Evolution and the Evolutionary Definition of Life. J Mol Evol 2017;84:225-235. [PMID: 28664404 DOI: 10.1007/s00239-017-9799-3] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Accepted: 06/21/2017] [Indexed: 11/24/2022]
Number Cited by Other Article(s)
1
Sawada Y, Daigaku Y, Toma K. Maximum Entropy Production Principle of Thermodynamics for the Birth and Evolution of Life. ENTROPY (BASEL, SWITZERLAND) 2025;27:449. [PMID: 40282684 PMCID: PMC12025891 DOI: 10.3390/e27040449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 04/07/2025] [Accepted: 04/15/2025] [Indexed: 04/29/2025]
2
Tower J. Selectively advantageous instability in biotic and pre-biotic systems and implications for evolution and aging. FRONTIERS IN AGING 2024;5:1376060. [PMID: 38818026 PMCID: PMC11137231 DOI: 10.3389/fragi.2024.1376060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 04/15/2024] [Indexed: 06/01/2024]
3
Malaterre C. Is Life Binary or Gradual? Life (Basel) 2024;14:564. [PMID: 38792586 PMCID: PMC11121977 DOI: 10.3390/life14050564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/15/2024] [Accepted: 04/24/2024] [Indexed: 05/26/2024]  Open
4
Bartoš O, Chmel M, Swierczková I. The overlooked evolutionary dynamics of 16S rRNA revises its role as the "gold standard" for bacterial species identification. Sci Rep 2024;14:9067. [PMID: 38643216 PMCID: PMC11032355 DOI: 10.1038/s41598-024-59667-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 04/12/2024] [Indexed: 04/22/2024]  Open
5
Rodriguez LE, Altair T, Hermis NY, Jia TZ, Roche TP, Steller LH, Weber JM. Chapter 4: A Geological and Chemical Context for the Origins of Life on Early Earth. ASTROBIOLOGY 2024;24:S76-S106. [PMID: 38498817 DOI: 10.1089/ast.2021.0139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
6
Tapia HJ, Dávila P. Continuity and discontinuity in evolutionary processes with emphasis on plants. Biosystems 2024;236:105108. [PMID: 38159673 DOI: 10.1016/j.biosystems.2023.105108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 12/20/2023] [Accepted: 12/21/2023] [Indexed: 01/03/2024]
7
Vitas M, Dobovišek A. Is Darwinian selection a retrograde driving force of evolution? Biosystems 2023;233:105031. [PMID: 37734699 DOI: 10.1016/j.biosystems.2023.105031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 09/11/2023] [Accepted: 09/11/2023] [Indexed: 09/23/2023]
8
Baum DA, Peng Z, Dolson E, Smith E, Plum AM, Gagrani P. The ecology-evolution continuum and the origin of life. J R Soc Interface 2023;20:20230346. [PMID: 37907091 PMCID: PMC10618062 DOI: 10.1098/rsif.2023.0346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 10/10/2023] [Indexed: 11/02/2023]  Open
9
Sweeney KJ, Le T, Jorge MZ, Schellinger JG, Leman LJ, Müller UF. Peptide conjugates with polyaromatic hydrocarbons can benefit the activity of catalytic RNAs. Chem Sci 2023;14:10318-10328. [PMID: 37772096 PMCID: PMC10529712 DOI: 10.1039/d3sc03540a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 09/08/2023] [Indexed: 09/30/2023]  Open
10
Bartus É, Tököli A, Mag B, Bajcsi Á, Kecskeméti G, Wéber E, Kele Z, Fenteany G, Martinek TA. Light-Fueled Primitive Replication and Selection in Biomimetic Chemical Systems. J Am Chem Soc 2023. [PMID: 37285516 DOI: 10.1021/jacs.3c03597] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
11
Sawada Y, Daigaku Y, Toma K. Onset model of mutually catalytic self-replicative systems formed by an assembly of polynucleotides. Phys Rev E 2023;107:054404. [PMID: 37329042 DOI: 10.1103/physreve.107.054404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Accepted: 04/10/2023] [Indexed: 06/18/2023]
12
Pavlinova P, Lambert CN, Malaterre C, Nghe P. Abiogenesis through gradual evolution of autocatalysis into template-based replication. FEBS Lett 2023;597:344-379. [PMID: 36203246 DOI: 10.1002/1873-3468.14507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 09/20/2022] [Accepted: 09/29/2022] [Indexed: 11/11/2022]
13
Vibhute MA, Mutschler H. A Primer on Building Life‐Like Systems. CHEMSYSTEMSCHEM 2022. [DOI: 10.1002/syst.202200033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
14
Moracci L, Sensi F, Biccari A, Crotti S, Gaio E, Benetti F, Traldi P, Pucciarelli S, Agostini M. An investigation on [5 fluorouracil and epigallocatechin-3-gallate] complex activity on HT-29 cell death and its stability in gastrointestinal fluid. Oncotarget 2022;13:476-489. [PMID: 35251495 PMCID: PMC8893781 DOI: 10.18632/oncotarget.28207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 02/17/2022] [Indexed: 12/24/2022]  Open
15
A Mutation Threshold for Cooperative Takeover. Life (Basel) 2022;12:life12020254. [PMID: 35207541 PMCID: PMC8874834 DOI: 10.3390/life12020254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/27/2022] [Accepted: 01/29/2022] [Indexed: 11/17/2022]  Open
16
The Indeterminacy Bottleneck: Implications for Habitable Worlds. Acta Biotheor 2021;70:1. [PMID: 34862917 DOI: 10.1007/s10441-021-09432-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 11/01/2021] [Indexed: 10/19/2022]
17
Higgs PG. When Is a Reaction Network a Metabolism? Criteria for Simple Metabolisms That Support Growth and Division of Protocells. Life (Basel) 2021;11:life11090966. [PMID: 34575115 PMCID: PMC8469938 DOI: 10.3390/life11090966] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/08/2021] [Accepted: 09/08/2021] [Indexed: 11/16/2022]  Open
18
Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life. J Theor Biol 2021;527:110822. [PMID: 34214567 DOI: 10.1016/j.jtbi.2021.110822] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 06/11/2021] [Accepted: 06/26/2021] [Indexed: 11/21/2022]
19
Dill KA, Agozzino L. Driving forces in the origins of life. Open Biol 2021;11:200324. [PMID: 33529553 PMCID: PMC8061700 DOI: 10.1098/rsob.200324] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 01/07/2021] [Indexed: 12/21/2022]  Open
20
Qu T, Calabrese P, Singhavi P, Tower J. Incorporating antagonistic pleiotropy into models for molecular replicators. Biosystems 2020;201:104333. [PMID: 33359635 DOI: 10.1016/j.biosystems.2020.104333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Revised: 12/17/2020] [Accepted: 12/17/2020] [Indexed: 11/15/2022]
21
Kunnev D. Origin of Life: The Point of No Return. Life (Basel) 2020;10:life10110269. [PMID: 33153087 PMCID: PMC7693465 DOI: 10.3390/life10110269] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/01/2020] [Accepted: 11/01/2020] [Indexed: 12/13/2022]  Open
22
Crotti S, D'Aronco S, Moracci L, Tisato F, Porchia M, Mattoli L, Burico M, Bedont S, Traldi P, Agostini M. Evidence of noncovalent complexes in some natural extracts: Ceylon tea and mate extracts. JOURNAL OF MASS SPECTROMETRY : JMS 2020;55:e4459. [PMID: 31663260 DOI: 10.1002/jms.4459] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 10/07/2019] [Accepted: 10/14/2019] [Indexed: 06/10/2023]
23
Fontana F, Gelain F. Probing mechanical properties and failure mechanisms of fibrils of self-assembling peptides. NANOSCALE ADVANCES 2020;2:190-198. [PMID: 36133966 PMCID: PMC9416940 DOI: 10.1039/c9na00621d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Accepted: 12/16/2019] [Indexed: 05/08/2023]
24
Mayer C. Life in The Context of Order and Complexity. Life (Basel) 2020;10:life10010005. [PMID: 31963637 PMCID: PMC7175320 DOI: 10.3390/life10010005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 01/06/2020] [Accepted: 01/16/2020] [Indexed: 11/17/2022]  Open
25
Chen Y, Ma W. The origin of biological homochirality along with the origin of life. PLoS Comput Biol 2020;16:e1007592. [PMID: 31914131 PMCID: PMC6974302 DOI: 10.1371/journal.pcbi.1007592] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 01/21/2020] [Accepted: 12/09/2019] [Indexed: 11/18/2022]  Open
26
Bartlett SJ, Beckett P. Probing complexity: thermodynamics and computational mechanics approaches to origins studies. Interface Focus 2019;9:20190058. [PMID: 31641432 DOI: 10.1098/rsfs.2019.0058] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/06/2019] [Indexed: 12/15/2022]  Open
27
Shah V, de Bouter J, Pauli Q, Tupper AS, Higgs PG. Survival of RNA Replicators is much Easier in Protocells than in Surface-Based, Spatial Systems. Life (Basel) 2019;9:life9030065. [PMID: 31394866 PMCID: PMC6789734 DOI: 10.3390/life9030065] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 07/24/2019] [Accepted: 07/30/2019] [Indexed: 01/27/2023]  Open
28
Vitas M, Dobovišek A. Towards a General Definition of Life. ORIGINS LIFE EVOL B 2019;49:77-88. [PMID: 31222432 DOI: 10.1007/s11084-019-09578-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2019] [Accepted: 06/04/2019] [Indexed: 01/18/2023]
29
Morrow SM, Colomer I, Fletcher SP. A chemically fuelled self-replicator. Nat Commun 2019;10:1011. [PMID: 30824804 PMCID: PMC6397266 DOI: 10.1038/s41467-019-08885-9] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Accepted: 02/05/2019] [Indexed: 01/16/2023]  Open
30
Berezovskaya F, Karev GP, Katsnelson MI, Wolf YI, Koonin EV. Stable coevolutionary regimes for genetic parasites and their hosts: you must differ to coevolve. Biol Direct 2018;13:27. [PMID: 30621743 PMCID: PMC6822691 DOI: 10.1186/s13062-018-0230-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Accepted: 11/29/2018] [Indexed: 12/19/2022]  Open
31
Tkachenko AV, Maslov S. Onset of natural selection in populations of autocatalytic heteropolymers. J Chem Phys 2018;149:134901. [PMID: 30292218 DOI: 10.1063/1.5048488] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
32
Kunnev D, Gospodinov A. Possible Emergence of Sequence Specific RNA Aminoacylation via Peptide Intermediary to Initiate Darwinian Evolution and Code Through Origin of Life. Life (Basel) 2018;8:E44. [PMID: 30279401 PMCID: PMC6316189 DOI: 10.3390/life8040044] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 09/30/2018] [Accepted: 09/30/2018] [Indexed: 12/12/2022]  Open
33
Saracino GAA, Fontana F, Jekhmane S, Silva JM, Weingarth M, Gelain F. Elucidating Self-Assembling Peptide Aggregation via Morphoscanner: A New Tool for Protein-Peptide Structural Characterization. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2018;5:1800471. [PMID: 30128255 PMCID: PMC6097002 DOI: 10.1002/advs.201800471] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 05/11/2018] [Indexed: 05/13/2023]
34
Lancet D, Zidovetzki R, Markovitch O. Systems protobiology: origin of life in lipid catalytic networks. J R Soc Interface 2018;15:20180159. [PMID: 30045888 PMCID: PMC6073634 DOI: 10.1098/rsif.2018.0159] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 06/29/2018] [Indexed: 12/17/2022]  Open
35
Chemomimesis and Molecular Darwinism in Action: From Abiotic Generation of Nucleobases to Nucleosides and RNA. Life (Basel) 2018;8:life8020024. [PMID: 29925796 PMCID: PMC6027154 DOI: 10.3390/life8020024] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 06/14/2018] [Accepted: 06/19/2018] [Indexed: 01/26/2023]  Open
36
Tupper AS, Shi K, Higgs PG. The Role of Templating in the Emergence of RNA from the Prebiotic Chemical Mixture. Life (Basel) 2017;7:life7040041. [PMID: 29088116 PMCID: PMC5745554 DOI: 10.3390/life7040041] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 09/25/2017] [Accepted: 10/26/2017] [Indexed: 01/11/2023]  Open
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