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De la Rosa-García S, Sierra-Fernández A, Solís CG, García NS, Quintana P, Gómez-Cornelio S, Fort R. Fungal community dynamics on limestone at the Chichén Itzá archaeological site in Mexico driven by protective treatments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167563. [PMID: 37802337 DOI: 10.1016/j.scitotenv.2023.167563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 09/26/2023] [Accepted: 10/01/2023] [Indexed: 10/08/2023]
Abstract
Microorganisms naturally colonize rock-based materials in outdoor environments, thereby contributing to their degradation. Fungi, especially in tropical environments with abundant water and favorable temperatures, play a significant role in biodegradation. However, many aspects of the microorganism-stone interaction, including fungal colonization dynamics and the impact of treatment applications, remain unclear. This study conducted a four-year in-situ evaluation of fungal community dynamics on limestone surfaces in the Temple of the Warriors at the Chichén Itzá archaeological site in Mexico, focusing on cleaning and treatment using nanoparticles (NPs). These NPs included zinc oxide (ZnO) and CaZn2(OH)6·2H2O (CZ)-based NPs synthesized via sol-gel (CZ-SG) and mechanochemical methods (CZ-MC), as well as CZ/Ca(OH)2-based products (CZ:Ca-SG). The microbial colonization cover was assessed using colorimetric measurements, and the surface was sampled for fungal community isolation and identification. The results demonstrated significant impacts of cleaning and nanomaterial applications on cultivable fungal communities (melanized filamentous, hyaline, and microcolonial fungi), altering composition, dynamics, and stone surface coloration. In particular, ZnO NPs caused 50 % decline in fungal species and individuals, whereas CZ:Ca-SG NPs displaced most species, indicating effective inhibition of the cultivable fungal community. Microcolonial fungi (MCF), known for their tolerance to withstand harsh environmental conditions, were the only fungal group found in the CZ:Ca-SG treatment. In contrast, CZ-SG and CZ-MC increased the abundance of melanized species, resulting in darkening and reduced color intensity. This study highlights the importance of microcolonial fungi that are tolerant to cleaning and coating procedures in the preservation of stone cultural heritage. These findings enhance our understanding of fungal colonization dynamics following treatment and provide valuable insights into the challenges associated with preserving stone materials in tropical environments.
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Affiliation(s)
- Susana De la Rosa-García
- Laboratorio de Microbiología Aplicada, División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, 0.5 km Carretera Villahermosa-Cárdenas, Villahermosa 86000, Tabasco, Mexico.
| | | | - Claudia García Solís
- Sección de Conservación y Restauración, Centro INAH-Yucatán, Calle 10 No. 310-A, Col. Gonzalo Guerrero, 97310 Mérida, Yucatán, Mexico
| | - Neftalí Soberanes García
- Universidad Politécnica del Centro, Km. 22.5 Carretera Federal Villahermosa-Teapa, Tumbulushal, Centro, 86290 Villahermosa, Tabasco, Mexico
| | - Patricia Quintana
- Laboratorio Nacional de Nano y Biomateriales, Departamento de Física Aplicada, CINVESTAV-IPN, A.P. 73, Ciordemex, 973109 Mérida, Yucatán, Mexico
| | - Sergio Gómez-Cornelio
- Universidad Politécnica del Centro, Km. 22.5 Carretera Federal Villahermosa-Teapa, Tumbulushal, Centro, 86290 Villahermosa, Tabasco, Mexico; Laboratorio de Nanotecnología-CICTAT, División Académica de Ingeniería y Arquitectura, Universidad Juárez Autónoma de Tabasco, Carr. Cunduacán-Jalpa de Méndez, Km 1, Cunduacán, Tabasco 86690, Mexico
| | - Rafael Fort
- Instituteo de Geociencias (CSIC, UCM), Severo Ochoa 7, CP 28040 Madrid, Spain.
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Villar-dePablo M, Ascaso C, Rodríguez-Pérez E, Urizal M, Wierzchos J, Pérez-Ortega S, de Los Ríos A. Innovative approaches to accurately assess the effectiveness of biocide-based treatments to fight biodeterioration of Cultural Heritage monuments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 897:165318. [PMID: 37422225 DOI: 10.1016/j.scitotenv.2023.165318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 07/01/2023] [Accepted: 07/02/2023] [Indexed: 07/10/2023]
Abstract
The development of diagnostic methods to accurately assess the effects of treatments on lithobiont colonization remains a challenge for the conservation of Cultural Heritage monuments. In this study, we tested the efficacy of biocide-based treatments on microbial colonization of a dolostone quarry, in the short and long-term, using a dual analytical strategy. We applied a metabarcoding approach to characterize fungal and bacterial communities over time, integrated with microscopy techniques to analyze the interactions of microorganisms with the substrate and evaluate the effectiveness. These communities were dominated by the bacterial phyla Actinobacteriota, Proteobacteria and Cyanobacteria, and the fungal order Verrucariales, which include taxa previously reported as biodeteriogenic agents and observed here associated with biodeterioration processes. Following the treatments, changes over time in the abundance profiles depend on taxa. While Cyanobacteriales, Cytophagales and Verrucariales decreased in abundance, other groups, such as Solirubrobacteriales, Thermomicrobiales and Pleosporales increased. These patterns could be related not only to the specific effects of the biocide on the different taxa, but also to different recolonization abilities of those organisms. The different susceptibility to treatments could be associated with the inherent cellular properties of different taxa, but differences in biocide penetration to endolithic microhabitats could be involved. Our results demonstrate the importance of both removing epilithic colonization and applying biocides to act against endolithic forms. Recolonization processes could also explain some of the taxon-dependent responses, especially in the long-term. Taxa showing resistance, and those benefiting from nutrient accumulation in the form of cellular debris following treatments, may have an advantage in colonizing treated areas, pointing to the need for long-term monitoring of a wide range of taxa. This study highlights the potential utility of combining metabarcoding and microscopy to analyze the effects of treatments and design appropriate strategies to combat biodeterioration and establish preventive conservation protocols.
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Affiliation(s)
- Mar Villar-dePablo
- Biogeochemistry and Microbial Ecology Department, Museo Nacional de Ciencias Naturales (CSIC), Serrano 115 dpdo., E-28006 Madrid, Spain
| | - Carmen Ascaso
- Biogeochemistry and Microbial Ecology Department, Museo Nacional de Ciencias Naturales (CSIC), Serrano 115 dpdo., E-28006 Madrid, Spain
| | - Esther Rodríguez-Pérez
- Biogeochemistry and Microbial Ecology Department, Museo Nacional de Ciencias Naturales (CSIC), Serrano 115 dpdo., E-28006 Madrid, Spain
| | | | - Jacek Wierzchos
- Biogeochemistry and Microbial Ecology Department, Museo Nacional de Ciencias Naturales (CSIC), Serrano 115 dpdo., E-28006 Madrid, Spain
| | - Sergio Pérez-Ortega
- Department of Mycology, Real Jardín Botánico (CSIC), Plaza Murillo 2, E-28014 Madrid, Spain
| | - Asunción de Los Ríos
- Biogeochemistry and Microbial Ecology Department, Museo Nacional de Ciencias Naturales (CSIC), Serrano 115 dpdo., E-28006 Madrid, Spain.
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Zhang Y, Su M, Wu F, Gu JD, Li J, He D, Guo Q, Cui H, Zhang Q, Feng H. Diversity and Composition of Culturable Microorganisms and Their Biodeterioration Potentials in the Sandstone of Beishiku Temple, China. Microorganisms 2023; 11:microorganisms11020429. [PMID: 36838394 PMCID: PMC9965415 DOI: 10.3390/microorganisms11020429] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 02/03/2023] [Accepted: 02/04/2023] [Indexed: 02/11/2023] Open
Abstract
Microbial colonization on stone monuments leads to subsequent biodeterioration; determining the microbe diversity, compositions, and metabolic capacities is essential for understanding biodeterioration mechanisms and undertaking heritage management. Here, samples of epilithic biofilm and naturally weathered and exfoliated sandstone particles from different locations at the Beishiku Temple were collected to investigate bacterial and fungal community diversity and structure using a culture-based method. The biodeterioration potential of isolated fungal strains was analyzed in terms of pigmentation, calcite dissolution, organic acids, biomineralization ability, and biocide susceptibility. The results showed that the diversities and communities of bacteria and fungi differed for the different sample types from different locations. The population of culturable microorganisms in biofilm samples was more abundant than that present in the samples exposed to natural weathering. The environmental temperature, relative humidity, and pH were closely related to the variation in and distribution of microbial communities. Fungal biodeterioration tests showed that isolated strains four and five were pigment producers and capable of dissolving carbonates, respectively. Their biomineralization through the precipitation of calcium oxalate and calcite carbonate could be potentially applied as a biotechnology for stone heritage consolidation and the mitigation of weathering for monuments. This study adds to our understanding of culturable microbial communities and the bioprotection potential of fungal biomineralization.
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Affiliation(s)
- Yong Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Min Su
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Fasi Wu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
- Correspondence: (F.W.); (H.F.)
| | - Ji-Dong Gu
- Environmental Science and Engineering Group, Guangdong Technion—Israel Institute of Technology, Shantou 515063, China
- Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion—Israel Institute of Technology, Shantou 515063, China
| | - Jie Li
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Dongpeng He
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Qinglin Guo
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Huiping Cui
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Qi Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Huyuan Feng
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
- Correspondence: (F.W.); (H.F.)
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He J, Zhang N, Shen X, Muhammad A, Shao Y. Deciphering environmental resistome and mobilome risks on the stone monument: A reservoir of antimicrobial resistance genes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156443. [PMID: 35660621 DOI: 10.1016/j.scitotenv.2022.156443] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 05/30/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Antimicrobial resistance (AMR) in the environment has attracted increasing attention as an emerging global threat to public health. Stone is an essential ecosystem in nature and also an important material for human society, having architectural and aesthetic values. However, little is known about the AMR in stone ecosystems, particularly in the stone monument, where antimicrobials are often applied against biodeterioration. Here, we provide the first detailed metagenomic study of AMR genes across different types of biodeteriorated stone monuments, which revealed abundant and diverse AMR genes conferring resistance to drugs (antibiotics), biocides, and metals. Totally, 132 AMR subtypes belonging to 27 AMR types were detected including copper-, rifampin-, and aminocoumarins-resistance genes, of which diversity was mainly explained by the spatial turnover (replacement of genes between samples) rather than nestedness (loss of nested genes between samples). Source track analysis confirms that stone resistomes are likely driven by anthropogenic activities across stone heritage areas. We also detected various mobile genetic elements (namely mobilome, e.g., prophages, plasmids, and insertion sequences) that could accelerate replication and horizontal transfer of AMR genes. Host-tracking analysis further identified multiple biodeterioration-related bacterial genera such as Pseudonocardia, Sphingmonas, and Streptomyces as the major hosts of resistome. Taken together, these findings highlight that stone microbiota is one of the natural reservoirs of antimicrobial-resistant hazards, and the diverse resistome and mobilome carried by active biodeteriogens may improve their adaptation on stone and even deactivate the antimicrobials applied against biodeterioration. This enhanced knowledge may also provide novel and specific avenues for environmental management and stone heritage protection.
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Affiliation(s)
- Jintao He
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Nan Zhang
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Xiaoqiang Shen
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Abrar Muhammad
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Yongqi Shao
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China; Key Laboratory for Molecular Animal Nutrition, Ministry of Education, China.
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Biocontamination and diversity of epilithic bacteria and fungi colonising outdoor stone and mortar sculptures. Appl Microbiol Biotechnol 2022; 106:3811-3828. [PMID: 35562489 DOI: 10.1007/s00253-022-11957-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 05/02/2022] [Accepted: 05/04/2022] [Indexed: 11/02/2022]
Abstract
Microbial communities colonising outdoor sculptures form intricate and dynamic ecosystems, which can accelerate the deterioration processes of the artworks and pose challenges to their conservation. In this study, the bacterial and fungal communities colonising the surfaces of five contemporary outdoor sculptures were characterised by high-throughput sequencing. The sculptures, made of marble, granite, Ançã limestone and mortar, are in urban parks and squares in the district of Porto, Portugal. The analysis of the microbial populations revealed great taxonomic diversity and species richness, including in well-preserved sculptures showing few visible traces of contamination. Proteobacteria, namely the genera Pseudomonas and Sphingomonas, were the core taxa common to all the sculptures, while Massilia and Aureobasidium were dominant only in granite. An abundance of pigment-producing microorganisms, such as Deinococcus, Methylobacterium, Rhodotorula and Sporobolomyces, was also found in granite. These are relevant taxonomic groups that can negatively impact stone and mortar artworks. The study was complemented with colourimetric analyses and bioluminescence assays to measure the adenosine triphosphate (ATP) content of samples collected from specific contaminated areas of the sculptures. The characterisation of the microbiomes of sculptures can provide further knowledge on the deterioration risks of this type of artwork in the region and help outline future targeted conservation strategies. KEY POINTS: • Rich and abundant microbiomes expose sculptures' vulnerability to deterioration. • Well-preserved sculptures are at risk of deterioration by pigment-producing taxa. • ATP and colourimetry quickly identified the most relevant contaminated areas.
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Garrido-Benavent I, Pérez-Ortega S, Durán J, Ascaso C, Pointing SB, Rodríguez-Cielos R, Navarro F, de los Ríos A. Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield. Front Microbiol 2020; 11:126. [PMID: 32117148 PMCID: PMC7018881 DOI: 10.3389/fmicb.2020.00126] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Accepted: 01/20/2020] [Indexed: 12/20/2022] Open
Abstract
Glacier forefields provide a unique chronosequence to assess microbial or plant colonization and ecological succession on previously uncolonized substrates. Patterns of microbial succession in soils of alpine and subpolar glacier forefields are well documented but those affecting high polar systems, including moraine rocks, remain largely unexplored. In this study, we examine succession patterns in pioneering bacterial, fungal and algal communities developing on moraine rocks and soil at the Hurd Glacier forefield (Livingston Island, Antarctica). Over time, changes were produced in the microbial community structure of rocks and soils (ice-free for different lengths of time), which differed between both substrates across the entire chronosequence, especially for bacteria and fungi. In addition, fungal and bacterial communities showed more compositional consistency in soils than rocks, suggesting community assembly in each niche could be controlled by processes operating at different temporal and spatial scales. Microscopy revealed a patchy distribution of epilithic and endolithic lithobionts, and increasing endolithic colonization and microbial community complexity along the chronosequence. We conclude that, within relatively short time intervals, primary succession processes at polar latitudes involve significant and distinct changes in edaphic and lithic microbial communities associated with soil development and cryptogamic colonization.
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Affiliation(s)
- Isaac Garrido-Benavent
- Departamento de Biogeoquímica y Ecología Microbiana, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
| | | | - Jorge Durán
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Coimbra, Portugal
| | - Carmen Ascaso
- Departamento de Biogeoquímica y Ecología Microbiana, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
| | - Stephen B. Pointing
- Yale-NUS College, National University of Singapore, Singapore, Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Ricardo Rodríguez-Cielos
- ETSI de Telecomunicación, Departamento de Señales, Sistemas y Radiocomunicaciones, Universidad Politécnica de Madrid, Madrid, Spain
| | - Francisco Navarro
- ETSI de Telecomunicación, Departamento de Matemática Aplicada a las TIC, Universidad Politécnica de Madrid, Madrid, Spain
| | - Asunción de los Ríos
- Departamento de Biogeoquímica y Ecología Microbiana, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
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Effects of Physico-Chemical Parameters on Actinomycetes Communities during Composting of Agricultural Waste. SUSTAINABILITY 2019. [DOI: 10.3390/su11082229] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The objective of this study was to investigate the influence of physico-chemical parameters on Actinomycetes communities and to prioritize those parameters that contributed to Actinomycetes community composition during the composting of agricultural waste. Denaturing gradient gel electrophoresis of polymerase chain reaction (PCR-DGGE) and redundancy analysis (RDA) were used to determine the relationships between those parameters and Actinomycetes community composition. Quantitative PCR (qPCR) and regression analysis were used to monitor the 16S rDNA copy numbers of Actinomycetes and to analyse the correlations between physico-chemical parameters and Actinomyces 16S rDNA gene abundance, respectively. The RDA results showed that moisture content, water soluble carbon (WSC) and pH (p < 0.05) made the main contributions to the temporal variations of Actinomycetes community composition. The output of the regression analysis indicated that moisture content (R2 = 0.407, p < 0.01) showed a negative linear relationship with the Actinomyces 16S rDNA gene abundance.
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Kumar A, Ng DHP, Wu Y, Cao B. Microbial Community Composition and Putative Biogeochemical Functions in the Sediment and Water of Tropical Granite Quarry Lakes. MICROBIAL ECOLOGY 2019; 77:1-11. [PMID: 29808411 DOI: 10.1007/s00248-018-1204-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 05/09/2018] [Indexed: 05/13/2023]
Abstract
Re-naturalized quarry lakes are important ecosystems, which support complex communities of flora and fauna. Microorganisms associated with sediment and water form the lowest trophic level in these ecosystems and drive biogeochemical cycles. A direct comparison of microbial taxa in water and sediment microbial communities is lacking, which limits our understanding of the dominant functions that are carried out by the water and sediment microbial communities in quarry lakes. In this study, using the 16S rDNA amplicon sequencing approach, we compared microbial communities in the water and sediment in two re-naturalized quarry lakes in Singapore and elucidated putative functions of the sediment and water microbial communities in driving major biogeochemical processes. The richness and diversity of microbial communities in sediments of the quarry lakes were higher than those in the water. The composition of the microbial communities in the sediments from the two quarries was highly similar to one another, while those in the water differed greatly. Although the microbial communities of the sediment and water samples shared some common members, a large number of microbial taxa (at the phylum and genus levels) were prevalent either in sediment or water alone. Our results provide valuable insights into the prevalent biogeochemical processes carried out by water and sediment microbial communities in tropical granite quarry lakes, highlighting distinct microbial processes in water and sediment that contribute to the natural purification of the resident water.
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Affiliation(s)
- Amit Kumar
- School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Ave, N1-01C-69, Singapore, 639798, Singapore
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore
| | - Daphne H P Ng
- School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Ave, N1-01C-69, Singapore, 639798, Singapore
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore
| | - Yichao Wu
- College of Resources and Environment, Huazhong Agricultural University, No. 1 Shizishan Street, Wuhan, 430070, China
| | - Bin Cao
- School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Ave, N1-01C-69, Singapore, 639798, Singapore.
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore.
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Sanmartín P, DeAraujo A, Vasanthakumar A. Melding the Old with the New: Trends in Methods Used to Identify, Monitor, and Control Microorganisms on Cultural Heritage Materials. MICROBIAL ECOLOGY 2018; 76:64-80. [PMID: 27117796 DOI: 10.1007/s00248-016-0770-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Accepted: 04/11/2016] [Indexed: 06/05/2023]
Abstract
Microbial activity has an important impact on the maintenance of cultural heritage materials, owing to the key role of microorganisms in many deterioration processes. In order to minimize such deleterious effects, there is a need to fine-tune methods that detect and characterize microorganisms. Trends in microbiology indicate that this need can be met by incorporating modern techniques. All of the methods considered in this review paper are employed in the identification, surveillance, and control of microorganisms, and they have two points in common: They are currently used in microbial ecology (only literature from 2009 to 2015 is included), and they are often applied in the cultural heritage sector. More than 75 peer-reviewed journal articles addressing three different approaches were considered: molecular, sensory and morphological, and biocontrol methods. The goal of this review is to highlight the usefulness of the traditional as well as the modern methods. The general theme in the literature cited suggests using an integrated approach.
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Affiliation(s)
- Patricia Sanmartín
- Laboratory of Applied Microbiology, School of Engineering and Applied Sciences, Harvard University, 58 Oxford St., Room 301, Cambridge, MA, 02138, USA
- Departamento de Edafología y Química Agrícola, Facultad de Farmacia, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Alice DeAraujo
- Laboratory of Applied Microbiology, School of Engineering and Applied Sciences, Harvard University, 58 Oxford St., Room 301, Cambridge, MA, 02138, USA
| | - Archana Vasanthakumar
- Laboratory of Applied Microbiology, School of Engineering and Applied Sciences, Harvard University, 58 Oxford St., Room 301, Cambridge, MA, 02138, USA.
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Cámara B, de Buergo MÁ, Bethencourt M, Fernández-Montblanc T, La Russa MF, Ricca M, Fort R. Biodeterioration of marble in an underwater environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 609:109-122. [PMID: 28735089 DOI: 10.1016/j.scitotenv.2017.07.103] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2017] [Revised: 07/11/2017] [Accepted: 07/11/2017] [Indexed: 06/07/2023]
Abstract
This study examines the deterioration of geomaterials used throughout history that today may be found lying on the ocean floor. Submerged archaeological sites including cargoes from shipwrecks or ancient city ruins have been a topic of interest from a perspective of in situ musealization, as a way of making underwater cultural heritage accessible to the public. In an experimental study conducted at an underwater archaeological site in the Bay of Cádiz (SW Spain), we subjected two types of marble (Carrara and Macael) to three conditions to which submerged archaeological objects are often exposed: full exposure to the water column, natural processes of burial and unearthing, or permanent burial. After an 18-month study period, the factor found to mostly affect these materials was their biological colonization. This factor was assessed by estimating total surface biocover and the rate of surface biocolonization, and also through the identification of skeletons and associated alteration forms by light microscopy, and scanning electron microscopy (SEM). Biofouling and bioerosion were the main causes of biodeterioration and dependent on the position of the marble specimens in the seawater. The response of both materials was similar, though dolomite crystals in the Carrara marble acted as a protective barrier against actively penetrating microorganisms. These investigations have allowed the study of tracers left by epilithic encrusting organisms and endolithic bioeroders on marbles intentionally exposed to seawater, providing new insights to the understanding of the biodeterioration processes occurring in cultural heritage stones, with significant implications when they are part of underwater archaeological remains.
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Affiliation(s)
- Beatriz Cámara
- Dept. of Geomaterials, Instituto de Geociencias (IGEO, CSIC-UCM), José Antonio Novais 12, 28040 Madrid, Spain.
| | - Mónica Álvarez de Buergo
- Dept. of Geomaterials, Instituto de Geociencias (IGEO, CSIC-UCM), José Antonio Novais 12, 28040 Madrid, Spain.
| | - Manuel Bethencourt
- Dept. of Material Science, Metallurgical Engineering and Inorganic Chemistry, Campus de Excelencia Internacional del Mar (CEI·MAR), Universidad de Cádiz, Avda. República Saharaui s/n, 11510 Puerto Real, Cadiz, Spain.
| | - Tomás Fernández-Montblanc
- Dept. of Material Science, Metallurgical Engineering and Inorganic Chemistry, Campus de Excelencia Internacional del Mar (CEI·MAR), Universidad de Cádiz, Avda. República Saharaui s/n, 11510 Puerto Real, Cadiz, Spain.
| | - Mauro F La Russa
- Dept. of Biology, Ecology and Earth Sciences (DiBEST), Università della Calabria, Via Pietro Bucci, 87036 Arcavacata di Rende, Cosenza, Italy.
| | - Michela Ricca
- Dept. of Biology, Ecology and Earth Sciences (DiBEST), Università della Calabria, Via Pietro Bucci, 87036 Arcavacata di Rende, Cosenza, Italy.
| | - Rafael Fort
- Dept. of Geomaterials, Instituto de Geociencias (IGEO, CSIC-UCM), José Antonio Novais 12, 28040 Madrid, Spain.
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Silva M, Pereira A, Teixeira D, Candeias A, Caldeira AT. Combined Use of NMR, LC-ESI-MS and Antifungal Tests for Rapid Detection of Bioactive Lipopeptides Produced by <i>Bacillus</i>. ACTA ACUST UNITED AC 2016. [DOI: 10.4236/aim.2016.610077] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Speranza M, Wierzchos J, De Los Rios A, Perez-Ortega S, Souza-Egipsy V, Ascaso C. Towards a more realistic picture of in situ biocide actions: combining physiological and microscopy techniques. THE SCIENCE OF THE TOTAL ENVIRONMENT 2012; 439:114-122. [PMID: 23063916 DOI: 10.1016/j.scitotenv.2012.09.040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2012] [Revised: 09/19/2012] [Accepted: 09/19/2012] [Indexed: 06/01/2023]
Abstract
In this study, we combined chlorophyll a fluorescence (ChlaF) measurements, using pulse-amplitude-modulate (PAM) equipment, with scanning electron microscopy in backscattered electron mode (SEM-BSE) and transmission electron microscopy (TEM) images to evaluate the actions of Koretrel at lower concentrations on Verrucaria nigrescens colonising a dolostone. ChlaF measurements are good indicators of the damaging effects of biocides. However, these indicators only provide an incomplete view of the mechanism of biocides used to control biodeterioration agents. The death of the V. nigrescens photobiont at two biocide concentrations was revealed by PAM, SEM-BSE and TEM. Once Koretrel was applied, the Fv/Fm ratios markedly fell in the first few hours after the 1.5% treatment, and ratios for the 3% dilution remained close to zero throughout the study. The algal zone shows the plasmolysed appearance of the photobiont cells, and important aspects related to the action of the biocide on free and lichenised fungi were also detected using SEM-BSE. Many of the mycobiont cells had only their cell walls preserved; although, some fungal hyphae in lichen thalli and some microorganisms in endolithic clusters maintained lipid storage in their cytoplasm. These results indicated that the combination of physiological and microscopy techniques improves the assessment of biocide action in situ and this will help to optimize protocols in order to reduce the emission of these compounds to the environment.
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Affiliation(s)
- M Speranza
- Museo Nacional de Ciencias Naturales, MNCN-CSIC, Serrano 115 bis, 28006 Madrid, Spain.
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Tretiach M, Bertuzzi S, Candotto Carniel F. Heat shock treatments: a new safe approach against lichen growth on outdoor stone surfaces. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012; 46:6851-6859. [PMID: 22582898 DOI: 10.1021/es3006755] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The control of lichen growth, particularly important in the field of stone conservation of outdoor monuments, largely depends on the use of biocides, that may be dangerous for the users, the environment and the substratum. A new, alternative approach is proposed, which makes the most of a poorly known peculiarity of poikilohydrous organisms: they are thermo-tolerant (up to 65-70 °C) when dry, but thermo-sensitive when wet. The efficacy of thermal treatments (range: 20-55 °C), in parallel to the application of three biocides, was verified in the laboratory with six epi- and endolithic lichens. Chlorophyll a fluorescence emission was checked in treated and nontreated samples of all the species, whereas histochemical observations with a dead cell stain were carried out on one of them. The feasibility of the thermal treatments in the field was verified with a seventh species. The results confirm that a 6 h treatment at 55 °C is sufficient to kill the lichens if they are kept fully hydrated. At 40 °C the organisms are damaged: in this case biocides at concentrations 10× lower than in normal applications can profitably be used. The new protocol is simple, the field equipment cheap, and the negative effects associated with standard biocide treatments are absent.
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Affiliation(s)
- Mauro Tretiach
- Dipartimento di Scienze della Vita, Università degli Studi di Trieste, I-34127 Trieste, Italy.
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Miller AZ, Sanmartín P, Pereira-Pardo L, Dionísio A, Saiz-Jimenez C, Macedo MF, Prieto B. Bioreceptivity of building stones: a review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2012; 426:1-12. [PMID: 22534363 DOI: 10.1016/j.scitotenv.2012.03.026] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2011] [Revised: 03/09/2012] [Accepted: 03/10/2012] [Indexed: 05/31/2023]
Abstract
In 1995, Guillitte defined bioreceptivity, a new term in ecology, as the ability of a material to be colonized by living organisms. Information about the bioreceptivity of stone is of great importance since it will help us to understand the material properties which influence the development of biological colonization in the built environment, and will also provide useful information as regards selecting stones for the conservation of heritage monuments and construction of new buildings. Studies of the bioreceptivity of stone materials are reviewed here with the aim of providing a clear set of conclusions on the topic. Definitions of bioreceptivity are given, stone bioreceptivity experiments are described, and finally the stone properties related to bioreceptivity are discussed. We suggest that a standardized laboratory protocol for evaluating stone bioreceptivity and definition of a stone bioreceptivity index are required to enable creation of a database on the primary bioreceptivity of stone materials.
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Affiliation(s)
- A Z Miller
- Centro de Petrologia e Geoquímica, Instituto Superior Técnico, Av. Rovisco Pais, 1049-001, Lisboa, Portugal.
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