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Liu S, Sun Y, Shi F, Liu Y, Wang F, Dong S, Li M. Composition and Diversity of Soil Microbial Community Associated With Land Use Types in the Agro-Pastoral Area in the Upper Yellow River Basin. FRONTIERS IN PLANT SCIENCE 2022; 13:819661. [PMID: 35548288 PMCID: PMC9082682 DOI: 10.3389/fpls.2022.819661] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 03/21/2022] [Indexed: 06/15/2023]
Abstract
The microorganisms of soil are sensitive to their living microenvironment, and their community structure and function will change with the environmental conditions. In the agro-pastoral area on the Qinghai-Tibet Plateau, revealing the diversity of the soil microbial communities and its response to different soil physicochemical properties and environmental factors are important for ecosystem management. The microbial (bacteria and archaea) community composition and diversity under different land use types (cultivated land, grazing grassland and planted forest) were analyzed by 16S rRNA (V4 region) method in a typical agro-pastoral region in the upper Yellow River basin. Also, the soil nutrients were studied and correlated with the microbial community. The results showed that the soil nutrient contents in grassland were low, but the available nutrients were relatively high. There was a great spatial variability under different distances to the river. The microbial community diversity was lower in the grassland than the cultivated land and forest land closer to the river. For all land uses, the dominant phyla of soil microorganisms included Proteobacteria, Actinobacteria, and Bacteroidetes, while the abundance of Clostridia was significantly higher than that of the other groups, indicating that Clostridia dominated the Firmicutes and affected soil microbial community composition. The linear discriminant analysis (LDA) effect size (LefSe) analysis showed different biomarkers were more abundant in grassland than other land use types, suggesting that the structure and diversity of soil microorganisms in grassland were significantly different compared with cultivated land and forest land. The distance-based redundancy analysis (db-RDA) results showed that the total phosphorus (TP) and calcium (Ca) were the key environmental factors affecting the diversity and abundance of the soil microbial community in cultivated land and forestland, respectively. However, the microbial diversity in grassland was more related to spatial distance of the river. These results provided a theoretical basis for the changes in the composition, structure, and function of soil microbial communities in agro-pastoral areas.
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Affiliation(s)
- Shiliang Liu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Yongxiu Sun
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Fangning Shi
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Yixuan Liu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Fangfang Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Shikui Dong
- School of Grassland Science, Beijing Forestry University, Beijing, China
| | - Mingqi Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
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Fan Q, Yang Y, Geng Y, Wu Y, Niu Z. Biochemical composition and function of subalpine shrubland and meadow soil microbiomes in the Qilian Mountains, Qinghai-Tibetan plateau, China. PeerJ 2022; 10:e13188. [PMID: 35402098 PMCID: PMC8988934 DOI: 10.7717/peerj.13188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 03/08/2022] [Indexed: 01/12/2023] Open
Abstract
Microorganisms participate in the soil biogeochemical cycle. Therefore, investigating variations in microbial biomass, composition, and functions can provide a reference for improving soil ecological quality due to the sensitivity of microorganisms to vegetation coverage changes. However, the differences in soil microorganisms between shrubland and meadow have not been investigated in ecologically vulnerable subalpine areas. This study aimed to investigate the biochemical composition and functions of the soil microbial community under two shrublands and a meadow at high altitudes (3,400-3,550 m). Three sites under two shrublands, Rhododendron thymifolium (RHO) and Potentilla fruticosa (POT), and one meadow dominated by Kobresia myosuroides (MEA), were selected on the southern slope of the Qilian Mountains on the northeastern edge of the Qinghai-Tibetan Plateau, China. Soil physicochemical properties, the microbial community composition expressed by the phospholipid fatty acid (PLFA) biomarker, and enzyme activities were analyzed as well as their relationships. The results showed that water holding capacity and the soil carbon, nitrogen, and potassium content in RHO and POT were higher than those in the MEA. Moreover, the soil active carbon, dissolved organic carbon, total nitrogen, and dissolved total nitrogen content in RHO were higher than those in POT. The abundance of total PLFAs, bacteria, and fungi beneath the shrublands was considerably higher than that in the MEA. The PLFA abundance in RHO was significantly higher than that in POT. The fungal-to-bacterial ratio of RHO and POT was significantly higher than that in the MEA. The activities of β-glucosidase, cellobiohydrolase, and leucine aminopeptidase were the highest in RHO among the three vegetation types, followed by POT and MEA. The redundancy analysis indicated that the biochemical composition of the soil microorganisms and enzyme activities were driven by total nitrogen, dissolved organic carbon, water holding capacity, and soil organic carbon. Therefore, shrublands, which have higher biomass, can improve soil moisture status, increase soil carbon and nitrogen content (especially active carbon and active nitrogen), and further increase the abundance of total PLFAs, bacteria, and fungi. The increase of microbial biomass indirectly enhances the activity of relevant soil enzymes. The variations in PLFA abundance and enzyme activities can be attributed to shrub species, especially evergreen shrubs, which create more favorable conditions for soil microorganisms. This study provides a theoretical basis for investigating the soil biogeochemical cycle and a scientific basis for soil management and vegetation restoration in the subalpine regions.
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Affiliation(s)
- Qiuyun Fan
- School of Forestry, Beijing Forestry University, Beijing, China
| | - Yuguo Yang
- School of Forestry, Beijing Forestry University, Beijing, China
| | - Yuqing Geng
- School of Forestry, Beijing Forestry University, Beijing, China
| | - Youlin Wu
- Huzhu Tu Autonomous County Beishan Forest Farm, Haidong, Qinghai, China
| | - Zhanen Niu
- Huzhu Tu Autonomous County Beishan Forest Farm, Haidong, Qinghai, China
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Ma M, Baskin CC, Li W, Zhao Y, Zhao Y, Zhao L, Chen N, Du G. Seed banks trigger ecological resilience in subalpine meadows abandoned after arable farming on the Tibetan Plateau. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2019; 29:e01959. [PMID: 31240782 DOI: 10.1002/eap.1959] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 05/03/2019] [Accepted: 05/29/2019] [Indexed: 06/09/2023]
Abstract
Although long-term agricultural activity frequently decreases biodiversity, it remains unclear whether such biodiversity losses are readily reversible. There is no doubt that the important ecological function of seed bank is ecological memory, but few researchers have explored the role of seed banks in grassland ecosystem resilience and threshold theory. We used a space-for-time subrogation method, i.e., a natural meadow (never farmed but used for moderate gazing) and meadows farmed for 30 yr and then abandoned for 1, 10, and 20 yr, to determine if the biodiversity/ecosystem of subalpine meadows could be reversed to the natural vegetation state and to investigate the role of soil seed banks in grassland ecosystem restoration and resilience. After 20 yr of natural regeneration, aboveground vegetation composition and properties had recovered to the natural meadow state, suggesting that critical thresholds were not crossed. Seed bank composition and structure exhibited almost no change after agricultural disturbance for decades. The persistent seed bank had the highest contribution to vegetation regeneration in the 1-yr abandoned field, which had the highest seed density. Similarity between the seed bank and aboveground vegetation and seed density decreased with years since abandonment. Since the seed bank still reflected the desired state, the system had inherent resilience and had not have crossed the transition threshold. Thus, high-diversity persistent seed banks are an important indicator of high resilience of this ecosystem. High similarity between the seed bank and vegetation in early-abandoned fields may indicate that ecological resilience is triggered and be a warning signal that interventions are needed to avoid a state transition. In applying alternative stable state theory to ecological restoration, much attention should be given to the soil seed bank.
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Affiliation(s)
- Miaojun Ma
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Carol C Baskin
- Department of Biology, University of Kentucky, Lexington, Kentucky, 40506, USA
| | - Wenjin Li
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Yunpeng Zhao
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Yin Zhao
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Liang Zhao
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Ning Chen
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
| | - Guozhen Du
- State Key Laboratory of Grassland and Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu Province, 730000, China
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Six years of grazing exclusion is the optimum duration in the alpine meadow-steppe of the north-eastern Qinghai-Tibetan Plateau. Sci Rep 2018; 8:17269. [PMID: 30467363 PMCID: PMC6250690 DOI: 10.1038/s41598-018-35273-y] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Accepted: 11/02/2018] [Indexed: 11/23/2022] Open
Abstract
Grazing exclusion is an effective management strategy for restoring degraded grasslands worldwide, but the effects of different exclusion durations on vegetation structure and soil properties remain unclear. Therefore, we evaluated vegetation characteristics and soil properties in an alpine meadow-steppe under grazing exclusion of different lengths (with grazing and with 3-year, 6-year, 9-year and 11-year grazing exclusions) on the Qinghai-Tibetan Plateau (QTP). We also explored the relationships among above-ground biomass, biodiversity and soil properties to ascertain the mechanism underlying the impact of grazing exclusion on these factors. The results showed that the above- and below-ground biomass, total number of plant species, community density, Shannon–Wiener diversity index, evenness index, richness index, soil and vegetation carbon (C) and nitrogen (N) storage and ecosystem C and N storage exhibited a hump-shaped pattern in response to the length of grazing exclusion with a 6-year threshold. In addition, structural equation modelling showed that the bulk density, soil moisture content, micro sand content and clay and silt contents were the most important determining factors leading to an increase in above-ground biomass in the alpine meadow-steppe after grazing exclusion, whereas the soil total N, available N, available phosphate and soil organic C content were the most important determining factors leading to a decrease in biodiversity. Considering the stability of the plant community and the C and N pools, long-term grazing exclusion (>9 years) is unnecessary, and the optimum exclosure duration of the moderately degraded Elymus nutans - Kobresia humilis type alpine meadow-steppe is six years on the north-eastern QTP.
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Effects of short-term grazing exclusion on plant phenology and reproductive succession in a Tibetan alpine meadow. Sci Rep 2016; 6:27781. [PMID: 27301554 PMCID: PMC4908376 DOI: 10.1038/srep27781] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 05/23/2016] [Indexed: 11/09/2022] Open
Abstract
Grazing exclusion (GE) has been widely considered as an effective avenue for restoring degraded grasslands throughout the world. GE, via modifying abiotic and biotic environments, inevitably affects phenological development. A five-year manipulative experiment was conducted in a Tibetan alpine meadow to examine the effects of GE on phenological processes and reproductive success. The study indicated that GE strongly affected phenological development of alpine plant species. Specifically, the low-growing, shallow-rooted species (LSS), such as Kobresia pygmaea, are more sensitive to GE-caused changes on upper-soil moisture and light. GE advanced each phonological process of K. pygmaea, except in the case of the treatment of fencing for 5 years (F5), which postponed the reproductive stage and lowered the reproductive success of K. pygmaea. Increased soil moisture triggered by GE, especially in the upper soil, may stimulate growth of LSS. However, the thick litter layer under the F5 treatment can influence the photoperiod of LSS, resulting in suppression of its reproductive development. These findings indicate that plant traits associated with resource acquisition, such as rooting depth and plant height, mediate plant phenology and reproductive responses to grazing exclusion treatments.
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Li Y, Dong S, Wen L, Wang X, Wu Y. Assessing the soil quality of alpine grasslands in the Qinghai-Tibetan Plateau using a modified soil quality index. ENVIRONMENTAL MONITORING AND ASSESSMENT 2013; 185:8011-8022. [PMID: 23494193 DOI: 10.1007/s10661-013-3151-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Accepted: 02/26/2013] [Indexed: 06/01/2023]
Abstract
Soil degradation has caused various problems on the planet. Human disturbance and land use changes always negatively affect soil quality. In this study, we used a modified soil quality index (SQI) to assess soil quality under differing degrees of human disturbance and land use. The alpine grasslands were studied at different levels of degradation [i.e., severely degraded grassland, heavily degraded grassland, moderately degraded grassland, and non-degraded grassland (NDG)] in a case study conducted in Qinghai-Tibetan Plateau (QTP) to test the feasibility of using the SQI. Fifteen chemical, physical, and biological soil parameters were measured in each type of grassland. Significant variations in SQI were found across the different types of grasslands according to severity of human disturbance and changes in land use. Urease, the ratio of microbial biomass nitrogen to total nitrogen, proteinase, and soil organic carbon were found to be the most important indicators for assessing soil quality. NDG had a higher SQI than the other three types of grasslands. It was concluded that SQI is effective for assessing the soil quality of alpine grasslands in the QTP. The intensity of human disturbance had a negative effect on soil quality in the QTP.
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Affiliation(s)
- Yuanyuan Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China
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Bagchi S, Ritchie ME. Introduced grazers can restrict potential soil carbon sequestration through impacts on plant community composition. Ecol Lett 2010; 13:959-68. [PMID: 20482575 DOI: 10.1111/j.1461-0248.2010.01486.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Grazing occurs over a third of the earth's land surface and may potentially influence the storage of 10(9) Mg year(-1) of greenhouse gases as soil C. Displacement of native herbivores by high densities of livestock has often led to overgrazing and soil C loss. However, it remains unknown whether matching livestock densities to those of native herbivores can yield equivalent soil C sequestration. In the Trans-Himalayas we found that, despite comparable grazing intensities, watersheds converted to pastoralism had 49% lower soil C than watersheds which retain native herbivores. Experimental grazer-exclusion within each watershed type, show that this difference appears to be driven by indirect effects of livestock diet selection, leading to vegetation shifts that lower plant production and reduce likely soil C inputs from vegetation by c. 25 gC m(-2) year(-1). Our results suggest that while accounting for direct impacts (stocking density) is a major step, managing indirect impacts on vegetation composition are equally important in influencing soil C sequestration in grazing ecosystems.
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Affiliation(s)
- Sumanta Bagchi
- Department of Biology, Syracuse University, Life Sciences Complex, 107 College Place, Syracuse, NY 13244, USA.
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