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Gao L, Zhang C, Zhu Y, Zhang N, Zhang C, Zhou S, Feng G, Huang F, Zhang L. Serum response factor promoting axonal regeneration by activating the Ras-Raf-Cofilin signaling pathway after the spinal cord injury. CNS Neurosci Ther 2024; 30:e14585. [PMID: 38421133 PMCID: PMC10851317 DOI: 10.1111/cns.14585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 11/29/2023] [Accepted: 12/19/2023] [Indexed: 03/02/2024] Open
Abstract
INTRODUCTION Serum response factor (SRF) is important in muscle development, tissue repair, and neuronal regulation. OBJECTIVES This research aims to thoroughly examine the effects of SRF on spinal cord injury (SCI) and its ability to significantly impact the recovery and regeneration of neuronal axons. METHODS The researchers created rat models of SCI and scratch injury to primary spinal cord neurons to observe the expression of relevant factors after neuronal injury. RESULTS We found that the SRF, Ras, Raf, and cofilin levels increased after injury and gradually returned to normal levels. Afterward, researchers gave rats with SCI an SRF inhibitor (CCG1423) and studied the effects with nuclear magnetic resonance and transmission electron microscopy. The SRF inhibitor rodents had worse spinal cord recovery and axon regrowth than the control group. And the apoptosis of primary neurons after scratch injury was significantly higher in the SRF inhibitor group. Additionally, the researchers utilized lentiviral transfection to modify the SRF expression in neurons. SRF overexpression increased neuron migration while silencing SRF decreased it. Finally, Western blotting and RT-PCR were conducted to examine the expression changes of related factors upon altering SRF expression. The results revealed SRF overexpression increased Ras, Raf, and cofilin expression. Silencing SRF decreased Ras, Raf, and Cofilin expression. CONCLUSION Based on our research, the SRF promotes axonal regeneration by activating the "Ras-Raf-Cofilin" signaling pathway.
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Affiliation(s)
- Limin Gao
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
- Department of NeurobiologySchool of Basic Medical Sciences, Capital Medical UniversityBeijingChina
| | - Chen Zhang
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
- Experimental Neurosurgery, Department of NeurosurgeryNeuroscience Center, Frankfurt University HospitalFrankfurt am MainGermany
| | - Yonglin Zhu
- Department of Bone and JointYantai Affiliated Hospital of Binzhou Medical UniversityYantaiShandongChina
| | - Naili Zhang
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
| | - Chunlei Zhang
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
| | - Shuai Zhou
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
| | - Guoying Feng
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
| | - Fei Huang
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
- University of Health and Rehabilitation SciencesQingdaoShandong ProvinceChina
| | - Luping Zhang
- Institute of Neurobiology, Binzhou Medical UniversityYantaiShandong ProvinceChina
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2
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Calvo AC, Moreno L, Moreno L, Toivonen JM, Manzano R, Molina N, de la Torre M, López T, Miana-Mena FJ, Muñoz MJ, Zaragoza P, Larrodé P, García-Redondo A, Osta R. Type XIX collagen: a promising biomarker from the basement membranes. Neural Regen Res 2020; 15:988-995. [PMID: 31823868 PMCID: PMC7034273 DOI: 10.4103/1673-5374.270299] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Among collagen members in the collagen superfamily, type XIX collagen has raised increasing interest in relation to its structural and biological roles. Type XIX collagen is a Fibril-Associated Collagen with Interrupted Triple helices member, one main subclass of collagens in this superfamily. This collagen contains a triple helix composed of three polypeptide segments aligned in parallel and it is associated with the basement membrane zone in different tissues. The molecular structure of type XIX collagen consists of five collagenous domains, COL1 to COL5, interrupted by six non-collagenous domains, NC1 to NC6. The most relevant domain by which this collagen exerts its biological roles is NC1 domain that can be cleavage enzymatically to release matricryptins, exerting anti-tumor and anti-angiogenic effect in murine and human models of cancer. Under physiological conditions, type XIX collagen expression decreases after birth in different tissues although it is necessary to keep its basal levels, mainly in skeletal muscle and hippocampal and telencephalic interneurons in brain. Notwithstanding, in amyotrophic lateral sclerosis, altered transcript expression levels show a novel biological effect of this collagen beyond its structural role in basement membranes and its anti-tumor and anti-angiogenic properties. Type XIX collagen can exert a compensatory effect to ameliorate the disease progression under neurodegenerative conditions specific to amyotrophic lateral sclerosis in transgenic SOD1G93A mice and amyotrophic lateral sclerosis patients. This novel biological role highlights its nature as prognostic biomarker of disease progression in and as promising therapeutic target, paving the way to a more precise prognosis of amyotrophic lateral sclerosis.
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Affiliation(s)
- Ana C Calvo
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Laura Moreno
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Leticia Moreno
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Janne M Toivonen
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Raquel Manzano
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Nora Molina
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Miriam de la Torre
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Tresa López
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Francisco J Miana-Mena
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - María J Muñoz
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Pilar Zaragoza
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
| | - Pilar Larrodé
- Hospital Clínico Universitario Lozano Blesa, Zaragoza, Spain
| | | | - Rosario Osta
- Laboratory of Genetics and Biochemistry (LAGENBIO), University of Zaragoza, Faculty of Veterinary Sciences, Instituto de Investigación Sanitaria de Aragón (IIS), IA2, CIBERNED, Zaragoza, Spain
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3
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Møller LLV, Klip A, Sylow L. Rho GTPases-Emerging Regulators of Glucose Homeostasis and Metabolic Health. Cells 2019; 8:E434. [PMID: 31075957 PMCID: PMC6562660 DOI: 10.3390/cells8050434] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 05/02/2019] [Accepted: 05/06/2019] [Indexed: 12/11/2022] Open
Abstract
Rho guanosine triphosphatases (GTPases) are key regulators in a number of cellular functions, including actin cytoskeleton remodeling and vesicle traffic. Traditionally, Rho GTPases are studied because of their function in cell migration and cancer, while their roles in metabolism are less documented. However, emerging evidence implicates Rho GTPases as regulators of processes of crucial importance for maintaining metabolic homeostasis. Thus, the time is now ripe for reviewing Rho GTPases in the context of metabolic health. Rho GTPase-mediated key processes include the release of insulin from pancreatic β cells, glucose uptake into skeletal muscle and adipose tissue, and muscle mass regulation. Through the current review, we cast light on the important roles of Rho GTPases in skeletal muscle, adipose tissue, and the pancreas and discuss the proposed mechanisms by which Rho GTPases act to regulate glucose metabolism in health and disease. We also describe challenges and goals for future research.
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Affiliation(s)
- Lisbeth Liliendal Valbjørn Møller
- Section of Molecular Physiology, Department of Nutrition, Exercise and Sports, Faculty of Science, University of Copenhagen, 2100 Copenhagen Oe, Denmark.
| | - Amira Klip
- Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.
| | - Lykke Sylow
- Section of Molecular Physiology, Department of Nutrition, Exercise and Sports, Faculty of Science, University of Copenhagen, 2100 Copenhagen Oe, Denmark.
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4
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Zhu M, Liu Z, Gao M, Zhang Y, Li Y, Ling S, Zhang P, Zhao C, Jiang L, Liu Y, Li Q, Li D, Hu S, Li Y. The effect of Bu Zhong Yi Qi decoction on simulated weightlessness‑induced muscle atrophy and its mechanisms. Mol Med Rep 2017; 16:5165-5174. [PMID: 28849026 PMCID: PMC5647051 DOI: 10.3892/mmr.2017.7287] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Accepted: 05/11/2017] [Indexed: 12/17/2022] Open
Abstract
Microgravity has been previously demonstrated to induce skeletal muscle atrophy, loss of muscle force and disorders in myogenesis and metabolism. Current pharmacological strategies exhibit poor efficacy. Bu Zhong Yi Qi decoction (BZ) is a well-known traditional Chinese medicine decoction used for myasthenia gravis. In the present study, its effect on unloading induced muscle atrophy was investigated. The mousetail suspension model was used to simulate weightlessness induced muscle atrophy. The results indicated that BZ could significantly protect muscles from simulated weightlessness-induced atrophy. To elucidate the underlying mechanisms, drugCIPHER-CS methods were introduced to predict its potential targets, significantly enriched pathways and biological processes. The results demonstrated that the calcium signaling pathway, citrate cycle, biosynthetic and lipid metabolic process are affected by BZ. Among the targets, nuclear receptor corepressor 1 (NCoR1) is one of the most important proteins involved in myogenesis and metabolism. The results indicated that BZ significantly downregulated NCoR 1 expression, and further induced muscle differentiation and metabolism by regulating NCoR1-associated gene expression in vivo and in vitro. In summary, the present study indicated that may be effective in combating weightlessness-induced muscle atrophy. Combined with bioinformatics, the underlying mechanism for this decoction was investigated, which provided an improved understanding of this decoction.
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Affiliation(s)
- Mu Zhu
- Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, Beijing 100019, P.R. China
| | - Zhongyang Liu
- State Key Laboratory of Proteomics, Beijing Proteome Research Center, Institute of Radiation Medicine, Beijing 102206, P.R. China
| | - Mingze Gao
- Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, Beijing 100019, P.R. China
| | - Yan Zhang
- Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, Beijing 100019, P.R. China
| | - Yuheng Li
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Shukuan Ling
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Pengfei Zhang
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Chenyang Zhao
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Lijun Jiang
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Yu Liu
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Qi Li
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
| | - Dong Li
- State Key Laboratory of Proteomics, Beijing Proteome Research Center, Institute of Radiation Medicine, Beijing 102206, P.R. China
| | - Sumin Hu
- Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, Beijing 100019, P.R. China
| | - Yingxian Li
- State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China
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5
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Waters AM, Stafman LL, Garner EF, Mruthyunjayappa S, Stewart JE, Mroczek-Musulman E, Beierle EA. Targeting Focal Adhesion Kinase Suppresses the Malignant Phenotype in Rhabdomyosarcoma Cells. Transl Oncol 2016; 9:263-73. [PMID: 27567948 PMCID: PMC4925808 DOI: 10.1016/j.tranon.2016.06.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Revised: 06/04/2016] [Accepted: 06/06/2016] [Indexed: 01/15/2023] Open
Abstract
Despite the tremendous advances in the treatment of childhood solid tumors, rhabdomyosarcoma (RMS) continues to provide a therapeutic challenge. Children with metastatic or relapsed disease have a disease-free survival rate under 30%. Focal adhesion kinase (FAK) is a nonreceptor tyrosine kinase that is important in many facets of tumorigenesis. Signaling pathways both upstream and downstream to FAK have been found to be important in sarcoma tumorigenesis, leading us to hypothesize that FAK would be present in RMS and would impact cellular survival. In the current study, we showed that FAK was present and phosphorylated in pediatric alveolar and embryonal RMS tumor specimens and cell lines. We also examined the effects of FAK inhibition upon two RMS cell lines utilizing parallel approaches including RNAi and small molecule inhibitors. FAK inhibition resulted in decreased cellular survival, invasion, and migration and increased apoptosis. Furthermore, small molecule inhibition of FAK led to decreased tumor growth in a nude mouse RMS xenograft model. The findings from this study will help to further our understanding of the regulation of tumorigenesis in RMS and may provide desperately needed novel therapeutic strategies for these difficult-to-treat tumors.
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Affiliation(s)
- Alicia M Waters
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL
| | - Laura L Stafman
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL
| | - Evan F Garner
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL
| | - Smitha Mruthyunjayappa
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL
| | - Jerry E Stewart
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL
| | | | - Elizabeth A Beierle
- Department of Surgery, Division of Pediatric Surgery, University of Alabama, Birmingham, AL.
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6
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Graham ZA, Gallagher PM, Cardozo CP. Focal adhesion kinase and its role in skeletal muscle. J Muscle Res Cell Motil 2015; 36:305-15. [PMID: 26142360 PMCID: PMC4659753 DOI: 10.1007/s10974-015-9415-3] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 06/15/2015] [Indexed: 10/23/2022]
Abstract
Skeletal muscle has a remarkable ability to respond to different physical stresses. Loading muscle through exercise, either anaerobic or aerobic, can lead to increases in muscle size and function while, conversely, the absence of muscle loading stimulates rapid decreases in size and function. A principal mediator of this load-induced change is focal adhesion kinase (FAK), a downstream non-receptor tyrosine kinase that translates the cytoskeletal stress and strain signals transmitted across the cytoplasmic membrane by integrins to activate multiple anti-apoptotic and cell growth pathways. Changes in FAK expression and phosphorylation have been found to correlate to specific developmental states in myoblast differentiation, muscle fiber formation and muscle size in response to loading and unloading. With the capability to regulate costamere formation, hypertrophy and glucose metabolism, FAK is a molecule with diverse functions that are important in regulating muscle cell health.
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Affiliation(s)
- Zachary A Graham
- Center of Excellence for the Medical Consequences of Spinal Cord Injury, James J. Peters Veterans Affairs Medical Center, 130 W. Kingsbridge Rd., Bronx, NY, 10468, USA
- Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | | | - Christopher P Cardozo
- Center of Excellence for the Medical Consequences of Spinal Cord Injury, James J. Peters Veterans Affairs Medical Center, 130 W. Kingsbridge Rd., Bronx, NY, 10468, USA.
- Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Department of Rehabilitation Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
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7
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Sakuma K, Aoi W, Yamaguchi A. The intriguing regulators of muscle mass in sarcopenia and muscular dystrophy. Front Aging Neurosci 2014; 6:230. [PMID: 25221510 PMCID: PMC4148637 DOI: 10.3389/fnagi.2014.00230] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Accepted: 08/10/2014] [Indexed: 12/25/2022] Open
Abstract
Recent advances in our understanding of the biology of muscle have led to new interest in the pharmacological treatment of muscle wasting. Loss of muscle mass and increased intramuscular fibrosis occur in both sarcopenia and muscular dystrophy. Several regulators (mammalian target of rapamycin, serum response factor, atrogin-1, myostatin, etc.) seem to modulate protein synthesis and degradation or transcription of muscle-specific genes during both sarcopenia and muscular dystrophy. This review provides an overview of the adaptive changes in several regulators of muscle mass in both sarcopenia and muscular dystrophy.
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Affiliation(s)
- Kunihiro Sakuma
- Research Center for Physical Fitness, Sports and Health, Toyohashi University of Technology, Toyohashi, Japan
| | - Wataru Aoi
- Laboratory of Health Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Akihiko Yamaguchi
- Department of Physical Therapy, Health Sciences University of Hokkaido, Kanazawa, Japan
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8
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MacKenzie MG, Hamilton DL, Pepin M, Patton A, Baar K. Inhibition of myostatin signaling through Notch activation following acute resistance exercise. PLoS One 2013; 8:e68743. [PMID: 23844238 PMCID: PMC3699505 DOI: 10.1371/journal.pone.0068743] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2013] [Accepted: 06/01/2013] [Indexed: 02/03/2023] Open
Abstract
Myostatin is a TGFβ family member and negative regulator of muscle size. Due to the complexity of the molecular pathway between myostatin mRNA/protein and changes in transcription, it has been difficult to understand whether myostatin plays a role in resistance exercise-induced skeletal muscle hypertrophy. To circumvent this problem, we determined the expression of a unique myostatin target gene, Mighty, following resistance exercise. Mighty mRNA increased by 6 h (82.9 ± 24.21%) and remained high out to 48 h (56.5 ± 19.67%) after resistance exercise. Further examination of the soleus, plantaris and tibialis anterior muscles showed that the change in Mighty mRNA at 6 h correlated with the increase in muscle size associated with this protocol (R(2) = 0.9996). The increase in Mighty mRNA occurred both independent of Smad2 phosphorylation and in spite of an increase in myostatin mRNA (341.8 ± 147.14% at 3 h). The myostatin inhibitor SKI remained unchanged. However, activated Notch, another potential inhibitor of TGFβ signaling, increased immediately following resistance exercise (83 ± 11.2%) and stayed elevated out to 6 h (78 ± 16.6%). Electroportion of the Notch intracellular domain into the tibialis anterior resulted in an increase in Mighty mRNA (63 ± 13.4%) that was equivalent to the canonical Notch target HES-1 (94.4 ± 7.32%). These data suggest that acute resistance exercise decreases myostatin signaling through the activation of the TGFβ inhibitor Notch resulting in a decrease in myostatin transcriptional activity that correlates well with muscle hypertrophy.
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Affiliation(s)
- Matthew G. MacKenzie
- Division of Molecular Physiology, University of Dundee, Dundee, Scotland, United Kingdom
| | - David Lee Hamilton
- Division of Molecular Physiology, University of Dundee, Dundee, Scotland, United Kingdom
- Health and Exercise Sciences Research Group, School of Sport, University of Stirling, Stirling, United Kingdom
| | - Mark Pepin
- Biomedical Engineering, University of California Davis, Davis, California, United States of America
| | - Amy Patton
- Department of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, California, United States of America
| | - Keith Baar
- Division of Molecular Physiology, University of Dundee, Dundee, Scotland, United Kingdom
- Biomedical Engineering, University of California Davis, Davis, California, United States of America
- Department of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, California, United States of America
- Department of Physiology and Membrane Biology, University of California Davis, Davis, California, United States of America
- * E-mail:
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9
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Narayanan T, Subramaniam S. Community Structure Analysis of Gene Interaction Networks in Duchenne Muscular Dystrophy. PLoS One 2013; 8:e67237. [PMID: 23840633 PMCID: PMC3686745 DOI: 10.1371/journal.pone.0067237] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Accepted: 05/14/2013] [Indexed: 02/07/2023] Open
Abstract
Duchenne Muscular Dystrophy (DMD) is an important pathology associated with the human skeletal muscle and has been studied extensively. Gene expression measurements on skeletal muscle of patients afflicted with DMD provides the opportunity to understand the underlying mechanisms that lead to the pathology. Community structure analysis is a useful computational technique for understanding and modeling genetic interaction networks. In this paper, we leverage this technique in combination with gene expression measurements from normal and DMD patient skeletal muscle tissue to study the structure of genetic interactions in the context of DMD. We define a novel framework for transforming a raw dataset of gene expression measurements into an interaction network, and subsequently apply algorithms for community structure analysis for the extraction of topological communities. The emergent communities are analyzed from a biological standpoint in terms of their constituent biological pathways, and an interpretation that draws correlations between functional and structural organization of the genetic interactions is presented. We also compare these communities and associated functions in pathology against those in normal human skeletal muscle. In particular, differential enhancements are observed in the following pathways between pathological and normal cases: Metabolic, Focal adhesion, Regulation of actin cytoskeleton and Cell adhesion, and implication of these mechanisms are supported by prior work. Furthermore, our study also includes a gene-level analysis to identify genes that are involved in the coupling between the pathways of interest. We believe that our results serve to highlight important distinguishing features in the structural/functional organization of constituent biological pathways, as it relates to normal and DMD cases, and provide the mechanistic basis for further biological investigations into specific pathways differently regulated between normal and DMD patients. These findings have the potential to serve as fertile ground for therapeutic applications involving targeted drug development for DMD.
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Affiliation(s)
- Tejaswini Narayanan
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, California, United States of America
| | - Shankar Subramaniam
- Department of Bioengineering, University of California San Diego, La Jolla, California, United States of America
- * E-mail:
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10
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Shum AMY, Mahendradatta T, Taylor RJ, Painter AB, Moore MM, Tsoli M, Tan TC, Clarke SJ, Robertson GR, Polly P. Disruption of MEF2C signaling and loss of sarcomeric and mitochondrial integrity in cancer-induced skeletal muscle wasting. Aging (Albany NY) 2012; 4:133-43. [PMID: 22361433 PMCID: PMC3314175 DOI: 10.18632/aging.100436] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Accepted: 02/20/2012] [Indexed: 12/25/2022]
Abstract
Cancer cachexia is a highly debilitating paraneoplastic disease observed in more than 50% of patients with advanced cancers and directly contributes to 20% of cancer deaths. Loss of skeletal muscle is a defining characteristic of patients with cancer cachexia and is associated with poor survival. The present study reveals the involvement of a myogenic transcription factor Myocyte Enhancer Factor (MEF) 2C in cancer-induced skeletal muscle wasting. Increased skeletal muscle mRNA expression of Suppressor of Cytokine Signaling (Socs) 3 and the IL-6 receptor indicative of active IL-6 signaling was seen in skeletal muscle of mice bearing the Colon 26 (C26) carcinoma. Loss of skeletal muscle structural integrity and distorted mitochondria were also observed using electron microscopy. Gene and protein expression of MEF2C was significantly downregulated in skeletal muscle from C26-bearing mice. MEF2C gene targets myozenin and myoglobin as well as myokinase were also altered during cachexia, suggesting dysregulated oxygen transport capacity and ATP regeneration in addition to distorted structural integrity. In addition, reduced expression of calcineurin was observed which suggested a potential pathway of MEF2C dysregulation. Together, these effects may limit sarcomeric contractile ability and also predispose skeletal muscle to structural instability; associated with muscle wasting and fatigue in cachexia.
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MESH Headings
- Animals
- Cachexia/etiology
- Cachexia/metabolism
- Cachexia/pathology
- Calcineurin/metabolism
- Cell Line, Tumor
- Down-Regulation
- Interleukin-6/metabolism
- MEF2 Transcription Factors
- Male
- Mice
- Mice, Inbred BALB C
- Mice, Inbred DBA
- Microscopy, Electron, Transmission
- Mitochondria, Muscle/pathology
- Models, Neurological
- Muscle, Skeletal/metabolism
- Muscle, Skeletal/pathology
- Myogenic Regulatory Factors/genetics
- Myogenic Regulatory Factors/metabolism
- Neoplasms, Experimental/complications
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- Sarcomeres/pathology
- Signal Transduction
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Affiliation(s)
- Angie M. Y. Shum
- Inflammation and Infection Research Centre, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
- Department of Pathology, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Theodore Mahendradatta
- Inflammation and Infection Research Centre, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
| | - Ryland J. Taylor
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Arran B. Painter
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Melissa M. Moore
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Maria Tsoli
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Timothy C. Tan
- Inflammation and Infection Research Centre, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
| | - Stephen J. Clarke
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Graham R. Robertson
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
| | - Patsie Polly
- Inflammation and Infection Research Centre, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
- Department of Pathology, School of Medical Sciences, Faculty of Medicine, University of New South Wales, Sydney, NSW, 2052, Australia
- Cancer Pharmacology Unit, ANZAC Research Institute, University of Sydney at Concord Repatriation and General Hospital, Sydney, NSW, 2139, Australia
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Abstract
Serum response factor (SRF) is a ubiquitously expressed transcription factor that binds to a DNA cis element known as the CArG box, which is found in the proximal regulatory regions of over 200 experimentally validated target genes. Genetic deletion of SRF is incompatible with life in a variety of animals from different phyla. In mice, loss of SRF throughout the early embryo results in gastrulation defects precluding analyses in individual organ systems. Genetic inactivation studies using conditional or inducible promoters directing the expression of the bacteriophage Cre recombinase have shown a vital role for SRF in such cellular processes as contractility, cell migration, synaptic activity, inflammation, and cell survival. A growing number of experimental and human diseases are associated with changes in SRF expression, suggesting that SRF has a role in the pathogenesis of disease. This review summarizes data from experimental model systems and human pathology where SRF expression is either deliberately or naturally altered.
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Lahoute C, Sotiropoulos A, Favier M, Guillet-Deniau I, Charvet C, Ferry A, Butler-Browne G, Metzger D, Tuil D, Daegelen D. Premature aging in skeletal muscle lacking serum response factor. PLoS One 2008; 3:e3910. [PMID: 19079548 PMCID: PMC2593784 DOI: 10.1371/journal.pone.0003910] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Accepted: 11/14/2008] [Indexed: 11/18/2022] Open
Abstract
Aging is associated with a progressive loss of muscle mass, increased adiposity and fibrosis that leads to sarcopenia. At the molecular level, muscle aging is known to alter the expression of a variety of genes but very little is known about the molecular effectors involved. SRF (Serum Response Factor) is a crucial transcription factor for muscle-specific gene expression and for post-natal skeletal muscle growth. To assess its role in adult skeletal muscle physiology, we developed a post-mitotic myofiber-specific and tamoxifen-inducible SRF knockout model. Five months after SRF loss, no obvious muscle phenotype was observed suggesting that SRF is not crucial for myofiber maintenance. However, mutant mice progressively developed IIB myofiber-specific atrophy accompanied by a metabolic switch towards a more oxidative phenotype, muscular lipid accumulation, sarcomere disorganization and fibrosis. After injury, mutant muscles exhibited an altered regeneration process, showing smaller regenerated fibers and persistent fibrosis. All of these features are strongly reminiscent of abnormalities encountered in aging skeletal muscle. Interestingly, we also observed an important age associated decrease in SRF expression in mice and human muscles. Altogether, these results suggest that a naturally occurring SRF down-regulation precedes and contributes to the muscle aging process. Indeed, triggering SRF loss in the muscles of mutant mice results in an accelerated aging process.
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Affiliation(s)
- Charlotte Lahoute
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
| | - Athanassia Sotiropoulos
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
| | - Marilyne Favier
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
| | - Isabelle Guillet-Deniau
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
| | - Claude Charvet
- INRA, UR1282 Infectiologie Animale et Santé Publique, Nouzilly, France
| | - Arnaud Ferry
- UMR S787, Inserm/UPMC-Paris 6/ Institut de Myologie, Paris, France
- Université Paris Descartes, Paris, France
| | | | - Daniel Metzger
- IGBMC (Institut de Génétique et de Biologie Moléculaire et Cellulaire), Department of Functional Genomics, Inserm, U596, CNRS, UMR 7104, Collège de France, Illkirch, Université Louis Pasteur, Strasbourg, France
| | - David Tuil
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
- * E-mail: (DT); (DD)
| | - Dominique Daegelen
- Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
- Inserm, U567, Paris, France
- * E-mail: (DT); (DD)
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13
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Favier FB, Benoit H, Freyssenet D. Cellular and molecular events controlling skeletal muscle mass in response to altered use. Pflugers Arch 2008; 456:587-600. [DOI: 10.1007/s00424-007-0423-z] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2007] [Accepted: 12/06/2007] [Indexed: 12/21/2022]
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14
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Bonet-Kerrache A, Fortier M, Comunale F, Gauthier-Rouvière C. The GTPase RhoA increases utrophin expression and stability, as well as its localization at the plasma membrane. Biochem J 2006; 391:261-8. [PMID: 15963030 PMCID: PMC1276923 DOI: 10.1042/bj20050024] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The Rho family of small GTPases are signalling molecules involved in cytoskeleton remodelling and gene transcription. Their activities are important for many cellular processes, including myogenesis. In particular, RhoA positively regulates skeletal-muscle differentiation. We report in the present study that the active form of RhoA increases the expression of utrophin, the autosomal homologue of dystrophin in the mouse C2C12 and rat L8 myoblastic cell lines. Even though this RhoA-dependent utrophin increase is higher in proliferating myoblasts, it is maintained during myogenic differentiation. This occurs via two mechanisms: (i) transcriptional activation of the utrophin promoter A and (ii) post-translational stabilization of utrophin. In addition, RhoA increases plasma-membrane localization of utrophin. Thus RhoA activation up-regulates utrophin levels and enhances its localization at the plasma membrane.
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Affiliation(s)
- Armelle Bonet-Kerrache
- CRBM (Centre de Recherches en Biochimie Macromoléculaire), CNRS FRE2593, 1919 Route de Mende, 34293 Montpellier Cedex, France
| | - Mathieu Fortier
- CRBM (Centre de Recherches en Biochimie Macromoléculaire), CNRS FRE2593, 1919 Route de Mende, 34293 Montpellier Cedex, France
| | - Franck Comunale
- CRBM (Centre de Recherches en Biochimie Macromoléculaire), CNRS FRE2593, 1919 Route de Mende, 34293 Montpellier Cedex, France
| | - Cécile Gauthier-Rouvière
- CRBM (Centre de Recherches en Biochimie Macromoléculaire), CNRS FRE2593, 1919 Route de Mende, 34293 Montpellier Cedex, France
- To whom correspondence should be addressed (email )
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Allen DL, Weber JN, Sycuro LK, Leinwand LA. Myocyte enhancer factor-2 and serum response factor binding elements regulate fast Myosin heavy chain transcription in vivo. J Biol Chem 2005; 280:17126-34. [PMID: 15728583 DOI: 10.1074/jbc.m501207200] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Adult fast muscle fibers express distinct myosin heavy chains (MyHC) in differing proportions, but the mechanisms underlying their differential expression remain undefined. We used a variety of in vitro and in vivo approaches to explore the contribution of transcriptional regulation to adult fast MyHC expression. Here we show that 800-1000 bp of a sequence upstream of the three mouse adult fast MyHC genes (Ia, IIb, and IId/x) are sufficient to drive muscle-specific and fiber-specific expression in vivo. We show that the upstream promoter region of the gene most abundantly expressed in mouse skeletal muscles, IIb MyHC, retains binding activity and transcriptional activation for three positive transcription factors, the serum response factor, Oct-1, and myocyte enhancer factor-2, whereas the other two genes (IIa and IId/x) have nucleotide substitutions in these sites that reduce binding and transcriptional activation. Finally, we demonstrate that regions upstream of 300 bp modulate the effects of these elements. Together, these data demonstrate that the quantitative differences in MyHC expression in mouse skeletal muscle have evolved at least in part through the elimination of positive-acting transcription factor binding sites.
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Affiliation(s)
- David L Allen
- Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado 80309-0347, USA
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