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Noguerales V, Meramveliotakis E, Castro-Insua A, Andújar C, Arribas P, Creedy TJ, Overcast I, Morlon H, Emerson BC, Vogler AP, Papadopoulou A. Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests. Mol Ecol 2023; 32:6110-6128. [PMID: 34775647 DOI: 10.1111/mec.16275] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 10/25/2021] [Accepted: 11/05/2021] [Indexed: 01/04/2023]
Abstract
Disentangling the relative role of environmental filtering and spatial processes in driving metacommunity structure across mountainous regions remains challenging, as the way we quantify spatial connectivity in topographically and environmentally heterogeneous landscapes can influence our perception of which process predominates. More empirical data sets are required to account for taxon- and context-dependency, but relevant research in understudied areas is often compromised by the taxonomic impediment. Here we used haplotype-level community DNA metabarcoding, enabled by stringent filtering of amplicon sequence variants (ASVs), to characterize metacommunity structure of soil microarthropod assemblages across a mosaic of five forest habitats on the Troodos mountain range in Cyprus. We found similar β diversity patterns at ASV and species (OTU, operational taxonomic unit) levels, which pointed to a primary role of habitat filtering resulting in the existence of largely distinct metacommunities linked to different forest types. Within-habitat turnover was correlated to topoclimatic heterogeneity, again emphasizing the role of environmental filtering. However, when integrating landscape matrix information for the highly fragmented Quercus alnifolia habitat, we also detected a major role of spatial isolation determined by patch connectivity, indicating that stochastic and niche-based processes synergistically govern community assembly. Alpha diversity patterns varied between ASV and OTU levels, with OTU richness decreasing with elevation and ASV richness following a longitudinal gradient, potentially reflecting a decline of genetic diversity eastwards due to historical pressures. Our study demonstrates the utility of haplotype-level community metabarcoding for characterizing metacommunity structure of complex assemblages and improving our understanding of biodiversity dynamics across mountainous landscapes worldwide.
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Affiliation(s)
- Víctor Noguerales
- Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de La Laguna, Tenerife, Canary Islands, Spain
| | | | | | - Carmelo Andújar
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de La Laguna, Tenerife, Canary Islands, Spain
| | - Paula Arribas
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de La Laguna, Tenerife, Canary Islands, Spain
| | - Thomas J Creedy
- Department of Life Sciences, Natural History Museum, London, UK
| | - Isaac Overcast
- Institut de Biologie de l'ENS (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Hélène Morlon
- Institut de Biologie de l'ENS (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Brent C Emerson
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de La Laguna, Tenerife, Canary Islands, Spain
| | - Alfried P Vogler
- Department of Life Sciences, Natural History Museum, London, UK
- Department of Life Sciences, Silwood Park Campus, Imperial College London, Ascot, UK
| | - Anna Papadopoulou
- Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus
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Laska A, Rector BG, Przychodzka A, Majer A, Zalewska K, Kuczynski L, Skoracka A. Do mites eat and run? A systematic review of feeding and dispersal strategies. Zool J Linn Soc 2023. [DOI: 10.1093/zoolinnean/zlac094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Abstract
Abstract
Dispersal is an important process affecting the survival of organisms and the structure and dynamics of communities and ecosystems in space and time. It is a multiphase phenomenon influenced by many internal and external factors. Dispersal syndromes can be complicated, but they are vital to our knowledge of the biology of any organism. We analysed dispersal ability in mites (Acariformes and Parasitiformes), a highly diverse group of wingless arthropods, taking into consideration various modes of dispersal, feeding strategies, body size and the number of articles published for each species. Based on 174 articles summarized for this study, it appears that mites are opportunistic when it comes to dispersal, regardless of their feeding habits, and are often able to adopt several different strategies as needs arise. Moreover, we find a significant positive relationship between the amount of research effort that was put into studying a given species and the number of modes of dispersal that were described. The most salient conclusion to be drawn from this positive correlation is that additional studies are needed, especially on a broader set of mite taxa, until the aforementioned correlation is no longer demonstrably significant.
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Affiliation(s)
- Alicja Laska
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
| | - Brian G Rector
- United States Department of Agricuture, Agriculture Research Service, Great Basin Rangelands Research Unit , Reno, NV , USA
| | - Anna Przychodzka
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
| | - Agnieszka Majer
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
| | - Kamila Zalewska
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
| | - Lechosław Kuczynski
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
| | - Anna Skoracka
- Population Ecology Lab, Faculty of Biology, Adam Mickewicz University , Poznań , Poland
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3
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Vuori T, Calhim S, Vecchi M. A lift in snail's gut provides an efficient colonization route for tardigrades. Ecology 2022; 103:e3702. [PMID: 35357002 PMCID: PMC9285705 DOI: 10.1002/ecy.3702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 02/17/2022] [Accepted: 02/18/2022] [Indexed: 11/13/2022]
Affiliation(s)
- Tommi Vuori
- Department of Biological and Environmental Science, University of Jyvaskyla, PO Box 35, FI-40014, Jyvaskyla, Finland
| | - Sara Calhim
- Department of Biological and Environmental Science, University of Jyvaskyla, PO Box 35, FI-40014, Jyvaskyla, Finland
| | - Matteo Vecchi
- Department of Biological and Environmental Science, University of Jyvaskyla, PO Box 35, FI-40014, Jyvaskyla, Finland
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Watz J, Eckstein RL, Nyqvist D. Effects of fragmentation per se on slug movement. ACTA OECOLOGICA 2021. [DOI: 10.1016/j.actao.2021.103771] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Thakur MP, Phillips HRP, Brose U, De Vries FT, Lavelle P, Loreau M, Mathieu J, Mulder C, Van der Putten WH, Rillig MC, Wardle DA, Bach EM, Bartz MLC, Bennett JM, Briones MJI, Brown G, Decaëns T, Eisenhauer N, Ferlian O, Guerra CA, König‐Ries B, Orgiazzi A, Ramirez KS, Russell DJ, Rutgers M, Wall DH, Cameron EK. Towards an integrative understanding of soil biodiversity. Biol Rev Camb Philos Soc 2020; 95:350-364. [PMID: 31729831 PMCID: PMC7078968 DOI: 10.1111/brv.12567] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 10/07/2019] [Accepted: 10/11/2019] [Indexed: 12/25/2022]
Abstract
Soil is one of the most biodiverse terrestrial habitats. Yet, we lack an integrative conceptual framework for understanding the patterns and mechanisms driving soil biodiversity. One of the underlying reasons for our poor understanding of soil biodiversity patterns relates to whether key biodiversity theories (historically developed for aboveground and aquatic organisms) are applicable to patterns of soil biodiversity. Here, we present a systematic literature review to investigate whether and how key biodiversity theories (species-energy relationship, theory of island biogeography, metacommunity theory, niche theory and neutral theory) can explain observed patterns of soil biodiversity. We then discuss two spatial compartments nested within soil at which biodiversity theories can be applied to acknowledge the scale-dependent nature of soil biodiversity.
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Affiliation(s)
- Madhav P. Thakur
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenGelderland, The Netherlands
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biology, Leipzig UniversityLeipzigSaxony, Germany
| | - Helen R. P. Phillips
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
| | - Ulrich Brose
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biodiversity, Friedrich Schiller University JenaJenaThuringia, Germany
| | - Franciska T. De Vries
- School of Earth and Environmental Sciences, The University of ManchesterManchesterNorth West England, UK
| | | | - Michel Loreau
- Centre for Biodiversity Theory and Modelling, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier UniversityMoulisOccitanie, France
| | - Jerome Mathieu
- Sorbonne Université, CNRS, UPECParisÎle-de-France, France
| | - Christian Mulder
- Department BiologicalGeological and Environmental Sciences, University of CataniaCataniaSicily, Italy
| | - Wim H. Van der Putten
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenGelderland, The Netherlands
- Laboratory of NematologyWageningen UniversityWageningenGelderland, The Netherlands
| | - Matthias C. Rillig
- Freie Universität Berlin, Institute of BiologyBerlinGermany
- Berlin‐Brandenburg Institute of Advanced Biodiversity Research (BBIB)BerlinGermany
| | - David A. Wardle
- Asian School for the Environment, Nanyang Technological UniversitySingaporeSingapore
| | - Elizabeth M. Bach
- Department of Biology and School of Global Environmental SustainabilityColorado State UniversityFort CollinsCOUSA
| | - Marie L. C. Bartz
- Center of Functional Ecology, Department of Life SciencesUniversity of CoimbraCoimbraCentro, Portugal
- Universidade Positivo, Rua Professor Pedro Viriato Parigot de SouzaCuritiba Paraná, Brazil
| | - Joanne M. Bennett
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biology, Martin Luther University Halle‐WittenbergHalle (Saale)Saxony-Anhalt, Germany
| | - Maria J. I. Briones
- Departamento de Ecología y Biología AnimalUniversidad de VigoVigoGalicien, Spain
| | | | - Thibaud Decaëns
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE UMR 5175, CNRS–Université de Montpellier–Université Paul‐Valéry Montpellier–EPHE)MontpellierOccitanie, France
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biology, Leipzig UniversityLeipzigSaxony, Germany
| | - Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biology, Leipzig UniversityLeipzigSaxony, Germany
| | - Carlos António Guerra
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Biology, Martin Luther University Halle‐WittenbergHalle (Saale)Saxony-Anhalt, Germany
| | - Birgitta König‐Ries
- German Centre for Integrative Biodiversity Research (iDiv), Halle‐Jena‐LeipzigLeipzigSaxony, Germany
- Institute of Computer Science, Friedrich Schiller University JenaJenaThuringia, Germany
| | - Alberto Orgiazzi
- European Commission, Joint Research Centre (JRC), Sustainable Resources DirectorateIspraVareseItaly
| | - Kelly S. Ramirez
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenGelderland, The Netherlands
| | - David J. Russell
- Senckenberg Museum of Natural History GörlitzGoerlitzSaxony, Germany
| | - Michiel Rutgers
- National Institute for Public Health and the EnvironmentBilthovenUtrecht, The Netherlands
| | - Diana H. Wall
- Department of Biology and School of Global Environmental SustainabilityColorado State UniversityFort CollinsCOUSA
| | - Erin K. Cameron
- Faculty of Biological and Environmental SciencesUniversity of HelsinkiHelsinki, Uusimaa, Finland
- Department of Environmental ScienceSaint Mary's UniversityHalifaxNova ScotiaCanada
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Affiliation(s)
| | - Lisa K. Tiemann
- Department of Plant, Soil and Microbial Sciences Michigan State University East Lansing MI USA
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Vašutová M, Mleczko P, López-García A, Maček I, Boros G, Ševčík J, Fujii S, Hackenberger D, Tuf IH, Hornung E, Páll-Gergely B, Kjøller R. Taxi drivers: the role of animals in transporting mycorrhizal fungi. MYCORRHIZA 2019; 29:413-434. [PMID: 31292712 DOI: 10.1007/s00572-019-00906-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 06/19/2019] [Indexed: 05/24/2023]
Abstract
Dispersal of mycorrhizal fungi via animals and the importance for the interacting partners' life history as well as for ecosystems is an understudied topic. In this review, we describe the available evidence and the most important knowledge gaps and finally suggest ways to gain the missing information. So far, 33 articles have been published proving a successful transfer of mycorrhizal propagules by animals. The vast majority of research on invertebrates was focused on arbuscular mycorrhizal (AM) fungi, whereas papers on vertebrates (mainly rodents and artiodactyls) equally addressed ectomycorrhizal (ECM) and AM fungi. Effective dispersal has been mostly shown by the successful inoculation of bait plants and less commonly by spore staining or germination tests. Based on the available data and general knowledge on animal lifestyles, collembolans and oribatid mites may be important in transporting ECM fungal propagules by ectozoochory, whereas earthworms, isopods, and millipedes could mainly transfer AM fungal spores in their gut systems. ECM fungal distribution may be affected by mycophagous dipterans and their hymenopteran parasitoids, while slugs, snails, and beetles could transport both mycorrhizal groups. Vertebrates feeding on fruit bodies were shown to disperse mainly ECM fungi, while AM fungi are transported mostly accidentally by herbivores. The important knowledge gaps include insufficient information on dispersal of fungal propagules other than spores, the role of invertebrates in the dispersal of mycorrhizal fungi, the way in which propagules pass through food webs, and the spatial distances reached by different dispersal mechanisms both horizontally and vertically.
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Affiliation(s)
- Martina Vašutová
- Global Change Research Institute, Czech Academy of Sciences, Lipová 1789/9, 37005, České Budějovice, Czech Republic.
- Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic.
| | - Piotr Mleczko
- Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, Gronostajowa 3, 30-387, Kraków, Poland
| | - Alvaro López-García
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Irena Maček
- Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia
- Faculty of Mathematics, Natural Sciences and Information Technologies (FAMNIT), University of Primorska, Glagoljaška 8, 6000, Koper, Slovenia
| | - Gergely Boros
- Department of Zoology and Animal Ecology, Szent István University, Páter Károly u. 1., Gödöllö, Hungary
| | - Jan Ševčík
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 71000, Ostrava, Czech Republic
| | - Saori Fujii
- Insect Ecology Laboratory, Department of Forest Entomology, Forestry and Forest Products Research Institute, 1 Matsunosato, Tsukuba, Ibaraki, 305-8687, Japan
| | | | - Ivan H Tuf
- Department of Ecology and Environmental Sciences, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Elisabeth Hornung
- Department of Ecology, Institute for Biology, University of Veterinary Medicine Budapest, Rottenbiller str. 50, Budapest, 1077, Hungary
| | - Barna Páll-Gergely
- Centre for Agricultural Research, Hungarian Academy of Sciences, Herman Ottó str. 15, Budapest, 1022, Hungary
| | - Rasmus Kjøller
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
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Schmelzle S, Blüthgen N. Under pressure: force resistance measurements in box mites (Actinotrichida, Oribatida). Front Zool 2019; 16:24. [PMID: 31312228 PMCID: PMC6611053 DOI: 10.1186/s12983-019-0325-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 06/12/2019] [Indexed: 11/10/2022] Open
Abstract
Background Mechanical defenses are very common and diverse in prey species, for example in oribatid mites. Here, the probably most complex form of morphological defense is known as ptychoidy, that enables the animals to completely retract the appendages into a secondary cavity and encapsulate themselves. The two groups of ptychoid mites constituting the Ptyctima, i.e. Euphthiracaroidea and Phthiracaroidea, have a hardened cuticle and are well protected against similar sized predators. Euphthiracaroidea additionally feature predator-repelling secretions. Since both taxa evolved within the glandulate group of Oribatida, the question remains why Phthiracaroidea lost this additional protection. In earlier predation bioassays, chemically disarmed specimens of Euphthiracaroidea were cracked by the staphylinid beetle Othius punctulatus, whereas equally sized specimens of Phthiracaroidea survived. We thus hypothesized that Phthiracaroidea can withstand significantly more force than Euphthiracaroidea and that the specific body form in each group is key in understanding the loss of chemical defense in Phthiracaroidea. To measure force resistance, we adapted the principle of machines applying compressive forces for very small animals and tested the two ptyctimous taxa as well as the soft-bodied mite Archegozetes longisetosus. Results Some Phthiracaroidea individuals sustained about 560,000 times their body weight. Their mean resistance was about three times higher, and their mean breaking point in relation to body weight nearly two times higher than Euphthiracaroidea individuals. The breaking point increased with body weight and differed significantly between the two taxa. Across taxa, the absolute force resistance increased sublinearly (with a 0.781 power term) with the animal's body weight. Force resistance of A. longisetosus was inferior in all tests (about half that of Euphthiracaroidea after accounting for body weight). As an important determinant of mechanical resistance in ptychoid mites, the individuals' cuticle thickness increased sublinearly with body diameter and body mass as well and did not differ significantly between the taxa. Conclusion We showed the feasibility of the force resistance measurement method, and our results were consistent with the hypothesis that Phthiracaroidea compensated its lack of chemical secretions by a heavier mechanical resistance based on a different body form and associated build-up of hemolymph pressure (defensive trade-off).
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Affiliation(s)
- Sebastian Schmelzle
- Department of Biology, Ecological Networks, Technische Universität Darmstadt, Schnittspahnstr. 3, 64287 Darmstadt, Germany
| | - Nico Blüthgen
- Department of Biology, Ecological Networks, Technische Universität Darmstadt, Schnittspahnstr. 3, 64287 Darmstadt, Germany
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Schuppenhauer MM, Lehmitz R, Xylander WER. Slow-moving soil organisms on a water highway: aquatic dispersal and survival potential of Oribatida and Collembola in running water. MOVEMENT ECOLOGY 2019; 7:20. [PMID: 31308949 PMCID: PMC6604229 DOI: 10.1186/s40462-019-0165-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 05/26/2019] [Indexed: 05/16/2023]
Abstract
BACKGROUND Oribatida and Collembola are an important part of the soil food web and increase soil fertility by contributing to the recycling of nutrients out of dead organic matter. Active locomotion enables only limited dispersal in these tiny, wingless arthropods, while passive dispersal plays an important role for long-distance dispersal. Previous investigations have focused on passive transport by wind, other animals, or sea currents, whereas studies on transport via running water are missing. However, previous observation of the long survival of submerged terrestrial microarthropods makes passive dispersal with running water very likely. METHODS By combining field and lab experiments, we studied the potential for passive dispersal of oribatid mites with running water. We investigated terrestrial Oribatida and Collembola: (1) along a stream taking soil and moss samples, (2) in a stream using sticky covers and aquarium nets, and (3) studied their ability to colonise new soil after aquatic transport with the help of floating islands. Furthermore, we investigated the survival of submerged Oribatida species and their floating capabilities in lab experiments to predict dispersal distances with running water. We tested for differences between species using Kruskal-Wallis test for equal medians and Mann-Whitney pairwise-comparison and χ2-test for the influence of body size on aquatic dispersal. RESULTS Soil and moss samples revealed a pool of 52 oribatid mite species at the stream bank. Within the stream, we caught 180 individuals from 36 oribatid mite species. Only 14 of those species were also found in the soil and moss samples, whereas the remaining 22 were of unknown origin. Based on material caught on sticky covers, an average of 63.9 (± 54.6) oribatid mite individuals fell on one m2 stream water per week. Four species of Collembola (27 individuals) and 21 species of oribatid mites (47 individuals) were collected with aquarium nets. Eight microarthropod species (Oribatida + Collembola) successfully colonised new soil in the floating islands after aquatic dispersal. Lab experiments showed that Oribatida can float for at least 14 hours at the surface of running water and may survive for more than 365 days when submerged. The floating abilities and survival rates were largely species-specific. CONCLUSION This is the first study to demonstrate successful passive dispersal with running water for two groups of terrestrial soil microarthropods, including subsequent colonisation of new soil. We show that submersion survival, as well as floating abilities, and therefore dispersal capability, are not only high in oribatid mites, but also species-specific. Running waters obviously serve as long-distance dispersal highways for many of these less mobile soil-living animals.
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Affiliation(s)
- Meike M. Schuppenhauer
- Senckenberg Museum of Natural History Görlitz, Am Museum 1, 02826 Görlitz, Germany
- Faculty of Biology, Technische Universität Dresden, 01062 Dresden, Germany
| | - Ricarda Lehmitz
- Senckenberg Museum of Natural History Görlitz, Am Museum 1, 02826 Görlitz, Germany
| | - Willi E. R. Xylander
- Senckenberg Museum of Natural History Görlitz, Am Museum 1, 02826 Görlitz, Germany
- International Institute Zittau - TU Dresden, Markt 23, 02763 Zittau, Germany
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Zhu D, Chen QL, Li H, Yang XR, Christie P, Ke X, Zhu YG. Land Use Influences Antibiotic Resistance in the Microbiome of Soil Collembolans Orchesellides sinensis. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:14088-14098. [PMID: 30481457 DOI: 10.1021/acs.est.8b05116] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Numerous studies have investigated the composition and diversity of antibiotic resistance genes (ARGs) in multiple environments but the pattern of ARGs in field-collected soil fauna remains poorly understood. In the present study soil collembolans were collected from six sites with three different land use types (parkway land, park land, and arable land) and 285 ARGs and 10 mobile genetic elements (MGEs) in the microbiome of these "wild" collembolans were quantified by high-throughput quantitative PCR. A total of 76 unique ARGs and 5 MGEs were detected. There were significant differences between collection sites in the antibiotic resistome in the collembolans. Land use significantly altered the distribution patterns of collembolan ARGs. Thirty shared ARGs and three shared MGEs were identified. The co-occurrences of shared resistomes were largely random, and more positive relationships were found in the coassociation network. Partial redundancy analysis confirms that the changes in bacterial communities explained 27.77% of the variation in ARGs. These findings suggest that resistance genes are pervasive in the microbiome associated with the field collembolan and the activity of the collembolans may contribute to the spread and dissemination of resistance genes in the environment, an aspect of ARGs that has until now been largely overlooked.
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Affiliation(s)
- Dong Zhu
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
- University of the Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Qing-Lin Chen
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
- University of the Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
| | - Hu Li
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
| | - Xiao-Ru Yang
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
| | - Peter Christie
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
| | - Xin Ke
- Institute of Plant Physiology and Ecology, Shanghai Institute of Biological Sciences , Chinese Academy of Sciences , Shanghai 200032 , China
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health , Institute of Urban Environment, Chinese Academy of Sciences , 1799 Jimei Road , Xiamen 361021 , China
- University of the Chinese Academy of Sciences , 19A Yuquan Road , Beijing 100049 , China
- State Key Laboratory of Urban and Regional Ecology , Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing 100085 , China
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