Diet overlap among two Asian carp and three native fishes in backwater lakes on the Illinois and Mississippi rivers

Niche overlap between native Cirrhinus molitorella and potential invasive competitors

Biological invasion is one of the important reasons for the decline of freshwater biodiversity in China and even in the world. The Pearl river basin is one of the most threatened areas in China by biological invasion. Over the past four decades, mrigal carp Cirrhinus mrigala and rohu Labeo rohita have invaded the Pearl river. They potentially pose a huge threat to a well-known economic species, native mud carp Cirrhinus molitorella. However, little is known about the likely habitat distributions of these two invasive species, which limits our management of them. In this study, we detected the stable isotope ratios of nitrogen and carbon for fish and quantified their niche overlap with nicheROVER in R. The result showed that the individuals of two invasive species had a higher probability to be found in niche region of native C. molitorella (i.e., 65 % for C. mrigala and 74 % for L. rohita). Moreover, to increase understanding of their habitat distributions and potential range of spread, the existing habitats data of these three fish species obtained from previous literatures and the high-resolution bioclimatic parameters from WorldClim were analyzed via Maxent model. The results stressed that niche overlap was high among species, which could have an impact on local biodiversity in future. Furthermore, the visualization of habitat distributions could help show the dynamic habitat changes of invasive and native species over time, while also provide new insights into the subsequent prevention and control for invasive species in other river regions around the world.

An Observational Study of Skeletal Malformations in Four Semi-Intensively Reared Carp Species

Cyprinids include some of the most widely farmed freshwater species. The aim of this study was to assess the incidence of skeletal malformations in carp species reared in semi-intensive systems in Albania: common carp (Cyprinus carpio), silver carp (Hypophthalmichthys molitrix), grass carp (Ctenopharyngodon idella) and bighead carp (Hypophthalmichthys nobilis). The common carp fingerlings had a mean total length of 28.9 ± 5.0 mm; the frequencies of individuals with at least one anomaly and at least one severe anomaly were 79.2% and 43.4%, respectively. The silver carp juveniles had a mean total length of 21.6 ± 2.1 mm; the frequencies of individuals with at least one anomaly and one severe anomaly were 93.1% and 57.5%, respectively. The grass carp fry had a mean total length of 33.5 ± 2.6 mm; all the analyzed specimens showed almost one anomaly and 86.4% showed at least one severe anomaly. The bighead carp juveniles had a mean total length of 34.4 ± 5.7 mm; the frequencies of individuals with at least one anomaly and at least one severe anomaly were 95.0% and 62.5%, respectively. The development of a more suitable feeding protocol for herbivorous species and the setting up of more efficient broodstock management protocols are suggested to reduce the high incidence of skeletal malformations.

Sound frequencies detectable by grass (Ctenopharyngodon idella) and black (Mylopharyngodon pisceus) carp determined with auditory evoked potentialsa)

Grass (Ctenopharyngodon idella) and black (Mylopharyngodon piceus) carp were imported to the United States as biocontrol agents in aquaculture facilities; however, due to intentional stocking or accidental release, invasive populations have become established. Invasive bigheaded carps display negative phonotaxis to sound, suggesting acoustic deterrents as a potential management tool. Grass and black carp frequency detection in response to 0.2-6 kHz sound was evaluated using auditory evoked potentials (AEPs) and determined for sound pressure level (SPL) and particle acceleration level (PAL). AEPs were detectable in response to pure tone stimuli from 0.2 to 4 kHz. The lowest SPL thresholds for grass carp were at 0.3 kHz (87.0 ± 3.6 dB re 1 μPa SPLrms; mean ± standard deviation), and the lowest PAL thresholds were at 0.4 kHz (-65.8 ± 3.2 dB re 1 ms-2 PALrms). For black carp, the lowest SPL and PAL thresholds were at 0.3 kHz (93.4 ± 3.0 dB re 1 μPa SPLrms, -60.8 ± 1.5 dB re 1 ms-2 PALrms). These results indicate that the ranges of detectable frequencies for grass and black carp overlap with those reported for bigheaded carps. However, behavioral studies are needed to determine potential efficacy of acoustic deterrents for these fish.

Predation of invasive silver carp by native largemouth bass is size-selective in the Illinois River

Silver carp (Hypophthalmichthys molitrix) are a nonnative, planktivorous, and highly invasive species of cyprinid located throughout the Mississippi River Basin. Although they co-occur with largemouth bass (Micropterus nigricans), an abundant native predatory fish, their predator-prey relationship is poorly understood. This potential relationship warrants investigation as largemouth bass are large-gaped predators capable of exhibiting top-down control on planktivorous fishes. The objectives of this study were to determine if largemouth bass consume juvenile silver carp, and if there was a relationship between length of largemouth bass and length of silver carp consumed. Largemouth bass were collected from the La Grange Pool of the Illinois River using 60 Hz-pulsed DC electrofishing and their diets were analyzed (n = 389, total length = 70-578 mm). Evidence of silver carp was present in 18% of diets of largemouth bass that consumed fish. Lengths of consumed silver carp were estimated from the dimensions of their recovered chewing pads or pharyngeal teeth in the stomachs of largemouth bass. A significant relationship between length of largemouth bass and length of silver carp consumed (p < 0.001, F = 34.63, r2 = 0.61) was observed. Estimated total lengths of silver carp were 34-101 mm and were recovered from diets of largemouth bass that were 94-262 mm total length. These results indicate enhancement of native largemouth bass populations is unlikely to substantially reduce silver carp populations in the Illinois River or in other waterways where these species co-occur.

Long-term ecological research in freshwaters enabled by regional biodiversity collections, stable isotope analysis, and environmental informatics

Biodiversity collections are experiencing a renaissance fueled by the intersection of informatics, emerging technologies, and the extended use and interpretation of specimens and archived databases. In this article, we explore the potential for transformative research in ecology integrating biodiversity collections, stable isotope analysis (SIA), and environmental informatics. Like genomic DNA, SIA provides a common currency interpreted in the context of biogeochemical principles. Integration of SIA data across collections allows for evaluation of long-term ecological change at local to continental scales. Challenges including the analysis of sparse samples, a lack of information about baseline isotopic composition, and the effects of preservation remain, but none of these challenges is insurmountable. The proposed research framework interfaces with existing databases and observatories to provide benchmarks for retrospective studies and ecological forecasting. Collections and SIA add historical context to fundamental questions in freshwater ecological research, reference points for ecosystem monitoring, and a means of quantitative assessment for ecosystem restoration.

Dietary overlap and selectivity among mountain steppe river fish in the United States and Mongolia

Lotic systems in mountain regions have historically provided secure habitat for native fish populations because of their relative isolation from human settlement and lack of upstream disturbances. However, rivers of mountain ecoregions are currently experiencing heightened levels of disturbance due to the introduction of nonnative species impacting endemic fishes in these areas. We compared the fish assemblages and diets of mountain steppe fishes of the stocked rivers in Wyoming with rivers in northern Mongolia where stocking is absent. Using gut content analysis, we quantified the selectivity and diets of fishes collected in these systems. Nonnative species had more generalist diets with lower levels of selectivity than most native species and native species had high levels of dietary specificity and selectivity. High abundances of nonnative species and high levels of dietary overlaps in our Wyoming sites is a cause of concern for native Cutthroat Trout and overall system stability. In contrast, fish assemblages characterizing Mongolia mountain steppe rivers were composed of only native species with diverse diets and higher selectivity values, suggesting low probability for interspecific competition.

Hydrological and lock operation conditions associated with paddlefish and bigheaded carp dam passage on a large and small scale in the Upper Mississippi River (Pools 14-18)

Movement and dispersal of migratory fish species is an important life-history characteristics that can be impeded by navigation dams. Although habitat fragmentation may be detrimental to native fish species, it might act as an effective and economical barrier for controlling the spread of invasive species in riverine systems. Various technologies have been proposed as potential fish deterrents at locks and dams to reduce bigheaded carp (i.e., silver carp and bighead carp (Hypophthalmichthys spp.)) range expansion in the Upper Mississippi River (UMR). Lock and Dam (LD) 15 is infrequently at open-river condition (spillway gates completely open; hydraulic head across the dam <0.4 m) and has been identified as a potential location for fish deterrent implementation. We used acoustic telemetry to evaluate paddlefish passage at UMR dams and to evaluate seasonal and diel movement of paddlefish and bigheaded carp relative to environmental conditions and lock operations at LD 15. We observed successful paddlefish passage at all dams, with the highest number of passages occurring at LDs 17 and 16. Paddlefish residency events in the downstream lock approach of LD 15 occurred more frequently and for longer durations than residency events of bigheaded carp. We documented upstream passages completed by two individual paddlefish through the lock chamber at LD 15, and a single bighead carp completed upstream passage through the lock chamber during two separate years of this study. We identified four bigheaded carp and 19 paddlefish that made upstream passages through the spillway gates at LD 15 during this study. The majority of the upstream passages through the spillway gates for both species occurred during open river conditions. When hydraulic head was approximately 1-m or greater, we observed these taxa opt for upstream passage through the lock chamber more often than the dam gates. In years with infrequent open-river condition, a deterrent placed in the downstream lock approach may assist in meeting the management goal of reducing upstream passage of bigheaded carps but could also potentially affect paddlefish residency and passage. Continued study to understand the effects of deterrents on native fish could be beneficial for implementing an integrated bigheaded carp control strategy. Understanding fish behavior at UMR dams is a critical information need for river managers as they evaluate potential tools or technologies to control upstream expansion of bigheaded carp in the UMR.

Consumption of Non-Native Bigheaded Carps by Native Blue Catfish in an Impounded Bay of the Upper Mississippi River

Adult bigheaded carps Hypophthalmichthys spp. have never been observed in the diets of native fishes in the Mississippi River Basin. In addition, blue catfish Ictalurus furcatus diet preference and foraging behavior have never been studied in the presence of non-native bigheaded carps in the Mississippi River system. We examined the gut contents of adult blue catfish (567–1020 mm, n = 65), captured from a Mississippi River backwater using trammel nets. All items in diets were separated and enumerated, and all fish-like diet items were genetically identified to confirm species-level ID. Bigheaded carp ages were determined by sectioning hard structures (pectoral spines, post-cleithra, and vertebrae). Adult silver carp Hypophthalmichthys molitrix (age 3–5, mean = 3.9 years, SE = 0.2; n = 21) had the highest frequency of occurrence (70%) and constituted the greatest percentage by number (58%) and weight (60%) in/of blue catfish diets. Gizzard shad Dorosoma cepedianum ranked second by all three measures (34%, 25%, and 26%). Finally, 50% to 100% of probable age-based sizes of silver carp exceeded gape measurements of blue catfish, suggesting scavenging was the dominant means of predation. More intensive sampling efforts are required to determine the system-wide importance of bigheaded carp in blue catfish diets.

Ecosystem responses to aquatic invasive species management: A synthesis of two decades of bigheaded carp suppression in a large river

The invasion of silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis) or "bigheaded carps" has caused extensive ecological and economic harm throughout the Mississippi River and its tributaries. To prevent their continued spread upstream toward the Great Lakes, intense commercial harvest was implemented on the Illinois River, a large tributary that connects the Mississippi River to Lake Michigan. Since implementation, harvest has reduced densities at the invasion front while also presenting an opportunity to generate a synthesis on ecosystem resilience in the face of accelerating invasion. Resilience, the ability of an ecosystem to recover after perturbation, was observed at local scales and within some taxa but has yet to manifest at a river-wide scale and often co-varied with abiotic environmental or seasonal factors. Thus, while intensive harvest has limited further spread of bigheaded carps, and evidence of additional secondary ecosystem benefits exists, opportunities remain to identify potential pathways that could spread such ecosystem benefits even farther.

Filter-feeding fish (Hypophthalmichthys molitrix) mediated phosphorus recycling versus grazing pressure as drivers of the trophic cascade in large enclosures subsidized by allochthonous detritus

Stocking of filter-feeding fish is a common tool used in (sub)tropical Chinese reservoirs to control phytoplankton. However, field investigations have showed that such stocking would enhance instead of controlling phytoplankton in these reservoirs. Reservoirs generally receive a considerable amount of detritus from their catchments which may constitute an important carbon source to filter-feeding fish. Whether direct consumption of detritus increases the availability of dissolved inorganic phosphorus (P) to phytoplankton and thereby provides resilience against the control of phytoplankton biomass is debated. We conducted an enclosure experiment in a (sub)tropical Chinese reservoir (Liuxihe Reservoir) to assess how a gradient of filter-feeding fish (Silver Carp Hypophthalmichthys molitrix) biomass affected P dynamics and fish grazing and predation when subsidized by allochthonous detritus. Fish had strong effects on the dynamics and fluxes of P. TP concentration in the water column increased over time in all enclosures, but the presence of fish slowed its increase. Thus, TP decreased with increasing fish biomass. Fish were a net sink of P to the water column, because they gained mass during the experiment. Moreover, P sequestered by fish could largely account for the lower TP concentrations observed in enclosures with fish compared to fishless enclosures. Fish presence at high biomass strongly reduced the abundance of large zooplankton species and P excretion by zooplankton. However, the negative effect of fish predation on zooplankton was negligible when fish was present at low biomass. Increasing fish biomass increased the relative role of fish in P cycling but decreased the overall P excretion by fish and zooplankton. Compared to enclosures with high fish biomass, both zooplankton grazing effect on phytoplankton (zooplankton: phytoplankton biomass ratio as a proxy) and the overall P excretion were much higher, whereas fish grazing effect on phytoplankton (fish: phytoplankton biomass ratio as a proxy), chlorophyll a and the yield of chlorophyll a per TP were much lower in enclosures with low fish biomass. This suggested that phytoplankton limitation might shift from one of zooplankton control to one of limitation by P availability with increasing fish biomass. Relative to fish mediated P recycling and fish grazing, zooplankton grazing appeared to be more important as a driver of trophic cascades in systems subsidized by allochthonous detritus. Silver Carp stocked at high biomass would strongly reduce zooplankton grazing pressure and increase the yield of phytoplankton per TP.

Alien fish species in open waters of India: Appearance, establishment and impacts

The diverse germplasms pool already available in the vast and varied water resources of India has potential to cater to the need of the fisheries and aquaculture sector, but introduction of fish species for different purposes is still continuing. The exotic fishes introduced into India for different purposes covers nearly 13.6% of total fish diversity. Due to wider tolerance limit and generalist nature, some alien fish species have acclimatised to diverse eco-climatic conditions. Some of these introduced fishes are now established in the open water bodies including rivers, wetlands and reservoirs and some others are in the process of establishment. Degraded open waters and wanton destruction of fishery resources in the rivers have resulted in depletion of the sensitive fish species and appearance of exotic fishes. The potential risk areas for appearance of the alien species are mushrooming fish culture units in different parts of the country, porous boundaries, farming of alien fishes in flood prone areas, rapid expansion of aquaculture and ornamental fish trade. Eradication of an introduced species is usually difficult or impossible once it is established in open water bodies. Therefore, there is an urgent need to regulate the import of alien fish species, based on their merit and likely impacts on open waters.

Demographic Rate Variability of Bighead and Silver Carps Along an Invasion Gradient

Invasive Bighead Carp Hypophthalmichthys nobilis and Silver Carp H. molitrix have infested and caused largescale ecological and economic damage to the Illinois, Mississippi, and Ohio rivers. We compiled demographic data from 42,995 fish from 23 pools in the Illinois, Mississippi, and Ohio rivers, which universities and management agencies previously collected as part of management, monitoring, and research activities. We used this data set to test whether demographic rates (length–weight relations including body condition, mortality, growth curves, and female maturity curves) varied among subpopulations across a gradient of invasion status. We found that length–weight relations and growth curves varied among subpopulations, whereas maturity curves did not. Our findings demonstrated spatial variability in demographic rates for Bighead and Silver carp across a broad geographic area in relation to invasion status and river conditions. Herein, we provide general subpopulation management options and present different hypotheses to explain the observed spatial variability in demographic rates.

Numeric Simulation Demonstrates That the Upstream Movement of Invasive Bigheaded Carp Can Be Blocked at Sets of Mississippi River Locks-and-Dams Using a Combination of Optimized Spillway Gate Operations, Lock Deterrents, and Carp Removal

Invasive bigheaded carp are advancing up the Upper Mississippi River by passing through its locks-and-dams (LDs). Although these structures already impede fish passage, this role could be greatly enhanced by modifying how their spillway gates operate, adding deterrent systems to their locks, and removing carp. This study examined this possibility using numeric modeling and empirical data, which evaluated all three options on an annual basis in both single LDs and pairs under different river flow conditions. Over 100 scenarios were modeled. While all three approaches showed promise, ranging from 8% to 73% reductions in how many carp pass a single LD, when employed together at pairs of LDs, upstream movement rates of invasive carp could be reduced 98–99% from current levels. Although modifying spillway gate operation is the least expensive option, its efficacy drops at high flows, so lock deterrents and/or removal using fishing/trapping are required to move towards complete blockage. Improved deterrent efficacy could also offset the need for more efficient removal. This model could help prioritize research and management actions for containing carp.

Diet overlap among non-native trout species and native cutthroat Trout (Oncorhynchus clarkii) in two U.S. ecoregions

The invasion of freshwater ecosystems by non-native species can constitute a significant threat to native species and ecosystem health. Non-native trouts have long been stocked in areas where native trouts occur and have negatively impacted native trouts through predation, competition, and hybridization. This study encompassed two seasons of sampling efforts across two ecoregions of the western United States: The Great Basin in summer 2016 and the Yellowstone River Basin in summer 2017. We found significant dietary overlaps among native and non-native trouts within the Great Basin and Yellowstone River Basin ecoregions. Three orders of invertebrates (Ephemeroptera, Trichoptera, and Diptera) composed the majority of stomach contents and were responsible for driving the observed patterns. Great Basin trout had higher body conditions (k), and non-native Great Basin trout had higher gut fullness values than Yellowstone River Basin trout, indicating a possible limitation of food in the Yellowstone River Basin. Native fishes were the least abundant and had the lowest body condition in each ecoregion. These findings may indicate a negative impact on native trouts by non-native trouts. We recommend additional monitoring of native and non-native trout diets, regular invertebrate surveys to identify the availability of diet items, and reconsidering stocking efforts that can result in overlap of non-native fishes with native cutthroat trout.

Development of Carbon Dioxide Barriers to Deter Invasive Fishes: Insights and Lessons Learned from Bigheaded Carp

Invasive species are a threat to biodiversity in freshwater. Removing an aquatic invasive species following arrival is almost impossible, and preventing introduction is a more viable management option. Bigheaded carp are an invasive fish spreading throughout the Midwestern United States and are threatening to enter the Great Lakes. This review outlines the development of carbon dioxide gas (CO2) as a non-physical barrier that can be used to deter the movement of fish and prevent further spread. Carbon dioxide gas could be used as a deterrent either to cause avoidance (i.e., fish swim away from zones of high CO2), or by inducing equilibrium loss due to the anesthetic properties of CO2 (i.e., tolerance). The development of CO2 as a fish deterrent started with controlled laboratory experiments demonstrating stress and avoidance, and then progressed to larger field applications demonstrating avoidance at scales that approach real-world scenarios. In addition, factors that influence the effectiveness of CO2 as a fish barrier are discussed, outlining conditions that could make CO2 less effective in the field; these factors that influence efficacy would be of interest to managers using CO2 to target other fish species, or those using other non-physical barriers for fish.

Dietary specificity and overlap in endorheic river fishes: How do native and nonnative species compare?

The introduction of nonnative species is one of the most critical problems facing freshwater systems today. The rivers of the Great Basin (USA) have been particularly imperilled by nonnative species introductions and represent a valuable location to study the dietary trends of native and nonnative fishes in isolated, endorheic systems. We collected fish from 23 sites, spanning three Great Basin watersheds (Carson, Humboldt and Bear Rivers) and two elevation categories (upland and lowland). Only a single species (speckled dace Rhinichthys osculus) occurred in both elevation zones. Diet item analyses of over 500 fish stomachs indicated significant dietary overlaps between native and nonnative fishes and detailed dietary selectivity for all species. This finding, along with the low species diversity observed in the region, suggests low dietary niche diversity, which could have the potential to amplify the competitive impacts of nonnatives on native species. In upland sites, nonnative trouts were the dominant invaders, while in lowland sites warm-water nonnatives were prevalent. The management implications we recommend based on our results urge for continued monitoring of water temperature and species occurrences to predict if dietary overlaps observed in this study are likely to change in the future. SIGNIFICANCE STATEMENT: The Great Basin is an ideal endorheic region to study dietary trends in native and nonnative fishes. These trends are important in predicting competitive interactions among fishes. By looking at the diets of fishes within this region we were able to identify multiple significant overlaps among native and nonnative fishes. These results represent a baseline for future studies in the region as well as being comparable to other regions with similar invasive/native overlaps.

Potential establishment and ecological effects of bighead and silver carp in a productive embayment of the Laurentian Great Lakes

Bighead carp H. nobilis and silver carp Hypothalmichthys molitrix (collectively bigheaded carps, BHC) are invasive planktivorous fishes that threaten to enter the Laurentian Great Lakes and disrupt food webs. To assess the likelihood of BHC establishment and their likely effects on the food web of Saginaw Bay, Lake Huron, we developed a multi-species individual-based bioenergetics model that tracks individual bighead and silver carp, four key fish species, and seven prey biomass groups over 50 years. The model tracks the daily consumption, mortality and growth of all individuals and the biomass dynamics of interacting prey pools. We ran simulation scenarios to determine the likelihood of BHC establishment under initial introductions from 5 to 1 million yearling and older individuals, and assuming variable age-0 carp survival rates (high, intermediate, and low). We bounded the survival of age-0 BHC as recruitment continues to be one of the biggest unknowns. We also simulated the potential effects of an established population of 1 million bighead carp or silver carp assuming variation in age-0 survival. Results indicated that as few as 10 BHC could establish a population assuming high or intermediate age-0 survival, but at least 100,000 individuals were needed to establish a population assuming low age-0 survival. BHC had negative effects on plankton and planktivorous fish biomass, which increased with BHC density. However, piscivorous walleye Sander vitreus appeared to benefit from BHC establishment. The potential for BHC to establish and affect ecologically and economically important fish species in Saginaw Bay is a cause for concern.

Gonad development and reproductive hormones of invasive silver carp (Hypophthalmichthys molitrix) in the Illinois River

Reproduction is a major component of an animal's life history strategy. Species with plasticity in their reproductive biology are likely to be successful as an invasive species, as they can adapt their reproductive effort during various phases of a biological invasion. Silver carp (Hypophthalmicthys molitrix), an invasive cyprinid in North America, display wide variation in reproductive strategies across both their native and introduced ranges, though the specifics of silver carp reproduction in the Illinois River have not been established. We assessed reproductive status using histological and endocrinological methods in silver carp between April and October 2018, with additional histological data from August to October 2017. Here, we show that female silver carp are batch spawners with asynchronous, indeterminate oocyte recruitment, while male silver carp utilize a determinate pattern of spermatogenesis which ceases in the early summer. High plasma testosterone levels in females could be responsible for regulating oocyte development. Our results suggest that silver carp have high spawning activity in the early summer (May-June), but outside of the peak spawning period, female silver carp can maintain spawning-capable status by adjusting rates of gametogenesis and atresia in response to environmental conditions, while males regress their gonads as early as July. The results of this study are compared to reports of silver carp reproduction in other North American rivers as well as in Asia.

Enhanced inference of ecological networks by parameterizing ensembles of population dynamics models constrained with prior knowledge

Background

Accurate network models of species interaction could be used to predict population dynamics and be applied to manage real world ecosystems. Most relevant models are nonlinear, however, and data available from real world ecosystems are too noisy and sparsely sampled for common inference approaches. Here we improved the inference of generalized Lotka–Volterra (gLV) ecological networks by using a new optimization algorithm to constrain parameter signs with prior knowledge and a perturbation-based ensemble method.

Results

We applied the new inference to long-term species abundance data from the freshwater fish community in the Illinois River, United States. We constructed an ensemble of 668 gLV models that explained 79% of the data on average. The models indicated (at a 70% level of confidence) a strong positive interaction from emerald shiner (Notropis atherinoides) to channel catfish (Ictalurus punctatus), which we could validate using data from a nearby observation site, and predicted that the relative abundances of most fish species will continue to fluctuate temporally and concordantly in the near future. The network shows that the invasive silver carp (Hypophthalmichthys molitrix) has much stronger impacts on native predators than on prey, supporting the notion that the invader perturbs the native food chain by replacing the diets of predators.

Conclusions

Ensemble approaches constrained by prior knowledge can improve inference and produce networks from noisy and sparsely sampled time series data to fill knowledge gaps on real world ecosystems. Such network models could aid efforts to conserve ecosystems such as the Illinois River, which is threatened by the invasion of the silver carp.

Invasive silver carp is empirically linked to declines of native sport fish in the Upper Mississippi River System

Empirical assessments of the influence of invasive species on native species are infrequent because the required long-term data are rarely available. The invasion of silver carp in the Upper Mississippi River System (UMRS) provides a unique opportunity to assess the influence of this invasive species on native fishes because a highly standardized, long-term monitoring program has been sampling the fish communities in six reaches of the UMRS for over 20 years. We analyzed fish abundance (catch per unit effort from electrofishing) and water-quality data collected from 1994 to 2013 from three reaches where silver carp populations have been established since 2000, and three reaches where they are not established. Our results provide empirical evidence of a negative effect of invasive silver carp on native sport fish in the UMRS. Although water temperature, suspended solid concentration, and flooding also differed substantially between control and invaded reaches, only silver carp abundance had a direct negative relationship with the abundance of adult sport fish. Our analyses suggest that the mechanism for this decline may be competition for zooplankton between silver carp and larval/juvenile sport fish. In reaches where silver carp is established, recruitment of juvenile sport fish appears to be constrained relative to reaches where silver carp is not established.

Impacts of broadband sound on silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp hearing thresholds determined using auditory evoked potential audiometry

Invasive silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp, collectively referred to as bigheaded carps, threaten aquatic ecosystems of the Upper Midwestern USA. Due to the extensive ecological impacts associated with these species, prevention of their further range expansion is the aim for fisheries management. Recent behavioral studies indicate bigheaded carps are deterred by acoustic barriers and exhibit negative phonotaxis in response to anthropogenic sound sources (≥ 150 dB re 1 μPa). However, the impact of long-term exposure to these sounds on the hearing capabilities of bigheaded carps has not been well documented. In this study, the auditory evoked potential (AEP) technique was used to determine auditory thresholds among bigheaded carps before and after exposure to high intensity (155.7 ± 4.7 dB re 1 μPa SPL_rms; - 8.0 ± 4.7 dB re 1 ms^-2 PAL_rms; mean ± SD) broadband sound. Fish were exposed to sound for 30 min or 24 h and AEP measurements were taken at three time points: immediately after exposure, 48 h, or 96 h later. Results indicate that silver and bighead carp experience temporary threshold shifts (TTSs) in frequency detection following sound exposure with the magnitude and length of TTS correlated with exposure duration. The findings from this study will be used to increase the long-term efficacy of acoustical deterrent measures aimed at preventing further range expansion of bigheaded carps.

The effect of light stimuli on dark-adapted visual sensitivity in invasive silver carp Hypophthalmichthys molitrix and bighead carp H. nobilis

Non-physical barriers, including the use of underwater strobe lights alone or paired with sound or bubbles, are being considered as a means to prevent the upstream migration of invasive silver carp Hypophthalmichthys molitrix and bighead carp H. nobilis. To optimize potential optical deterrents, it is necessary to understand the visual sensitivity of the fishes. Dark-adapted H. molitrix and H. nobilis were found to possess broad visual sensitivity between 470 to 620 nm with peak spectral sensitivity at 540 nm for H. molitrix and 560 nm in H. nobilis. To assess the effect of a strobe light on vision, dark-adapted H. molitrix, H. nobilis and common carp Cyprinus carpio, were exposed to three different 5 s trains (100, 200, or 500 ms on-off flashes) of white light and the recovery of visual sensitivity was determined by measuring the b-wave amplitude of the electroretinogram (ERG). For all species, the longest recoveries were observed in response to the 500 ms flash trains (H. molitrix mean ± SE = 702.0 ± 89.8 s; H. nobilis 648.0 ± 116.0 s; C. carpio 480 ± 180.0 s). The results suggest that strobe lights can temporarily depress visual sensitivity, which may render optical barriers less effective.

Bigmouth Buffalo Ictiobus cyprinellus sets freshwater teleost record as improved age analysis reveals centenarian longevity

Understanding the age structure and population dynamics of harvested species is crucial for sustainability, especially in fisheries. The Bigmouth Buffalo (Ictiobus cyprinellus) is a fish endemic to the Mississippi and Hudson Bay drainages. A valued food-fish for centuries, they are now a prized sportfish as night bowfishing has become a million-dollar industry in the past decade. All harvest is virtually unregulated and unstudied, and Bigmouth Buffalo are declining while little is known about their biology. Using thin-sectioned otoliths and bomb-radiocarbon dating, we find Bigmouth Buffalo can reach 112 years of age, more than quadrupling previous longevity estimates, making this the oldest known freshwater teleost (~12,000 species). We document numerous populations that are comprised largely (85-90%) of individuals over 80 years old, suggesting long-term recruitment failure since dam construction in the 1930s. Our findings indicate Bigmouth Buffalo require urgent attention, while other understudied fishes may be threatened by similar ecological neglect.

Microcystis Chemotype Diversity in the Alimentary Tract of Bigheaded Carp

Most cyanobacterial organisms included in the genus Microcystis can produce a wide repertoire of secondary metabolites. In the mid-2010s, summer cyanobacterial blooms of Microcystis sp. occurred regularly in Lake Balaton. During this period, we investigated how the alimentary tract of filter-feeding bigheaded carps could deliver different chemotypes of viable cyanobacteria with specific peptide patterns. Twenty-five Microcystis strains were isolated from pelagic plankton samples (14 samples) and the hindguts of bigheaded carp (11 samples), and three bloom samples were collected from the scums of cyanobacterial blooms. An LC-MS/MS-based untargeted approach was used to analyze peptide patterns, which identified 36 anabaenopeptin, 17 microginin, and 13 microcystin variants. Heat map clustering visualization was used to compare the identified chemotypes. A lack of separation was observed in peptide patterns of Microcystis that originated from hindguts, water samples, and bloom-samples. Except for 13 peptides, all other congeners were detected from the viable and cultivated chemotypes of bigheaded carp. This finding suggests that the alimentary tract of bigheaded carps is not simply an extreme habitat, but may also supply the cyanobacterial strains that represent the pelagic chemotypes.

Invasion genetics of the silver carp Hypophthalmichthys molitrix across North America: Differentiation of fronts, introgression, and eDNA metabarcode detection

In the 1970s, the introduced silver carp Hypophthalmichthys molitrix (which is indigenous to eastern Asia) escaped from southern U.S. aquaculture to spread throughout the Mississippi River basin, and since has steadily moved northward. This large, prolific filter-feeder reduces food availability for other fishes. It now has reached the threshold of the Laurentian Great Lakes, where it likely will significantly impact food chains and fisheries. Our study evaluates population genetic variability and differentiation of the silver carp using 10 nuclear DNA microsatellite loci, and sequences of two mitochondrial genes-cytochrome b and cytochrome c oxidase subunit 1, along with the nuclear ribosomal protein S7 gene intron 1. We analyze population samples from: two primary Great Lakes' invasion fronts (at the Illinois River outside of Chicago, IL in Lake Michigan and in the Wabash River, which leads into the Maumee River and western Lake Erie), the original establishment "core" in the Lower Mississippi River, and expansion areas in the Upper Mississippi and Missouri rivers. We analyze and compare our results with bighead and other invasive carps, and cyprinid relatives. Results reveal that the silver carp invasion possesses moderate levels of genetic diversity, with more mtDNA haplotypes and unique microsatellite alleles in the "core" Lower Mississippi River population, which also diverges the most. The two invasion fronts also significantly genetically differ. About 3% of individuals (including all populations except the Illinois River) contain a unique and very divergent mtDNA haplotype, which likely stems from historic introgression in Asia with female largescale silver carp H. harmandi. The nuclear microsatellites and S7 sequences of the introgressed individuals do not differ from silver carp and are very distant from bighead carp. These sequence variation data are employed to design and evaluate a targeted high-throughput metabarcoding sequence assay that identifies and distinguishes among species of invasive carps (i.e., silver, bighead, grass, black, and common carps, along with goldfish), as well as native cyprinids, using cytochrome b. Our assay further differentiates among selected silver carp haplotypes (including between H. molitrix and H. harmandi), for use in population genetics and future analyses of spread pathways. We test and evaluate this assay on environmental (e)DNA water samples from 48 bait shops in the Great Lakes' region (along the Lake Erie, Lake St. Clair, and Wabash River watersheds), using positive and negative controls and custom bioinformatic processing. Test results discern silver carp eDNA in four of the shops-three in Lake Erie and one in the Wabash River watershed-and bighead carp from one of the same Lake Erie venues, suggesting that retailers (who often source from established southerly populations) comprise another introduction vector. Our overall findings thus provide key population genetic and phylogenetic data for understanding and tracing introductions, vectors, and spread pathways for silver carp, their variants, and their relatives.

Isotope niche dimension and trophic overlap between bigheaded carps and native filter-feeding fish in the lower Missouri River, USA

Stable carbon and nitrogen isotope values (δ¹³C and δ¹⁵N) were used to evaluate trophic niche overlap between two filter-feeding fishes (known together as bigheaded carp) native to China, silver carp (Hypophthalmichthys molitrix) and bighead carp (Hypophthalmichthys nobilis), and three native filter-feeding fish including bigmouth buffalo (Ictiobus cyprinellus), gizzard shad (Dorosoma cepedianum) and paddlefish (Polyodon spathula) in the lower Missouri River, USA, using the Bayesian Stable Isotope in R statistics. Results indicate that except for bigmouth buffalo, all species displayed similar trophic niche size and trophic diversity. Bigmouth buffalo occupied a small trophic niche and had the greatest trophic overlap with silver carp (93.6%) and bighead carp (94.1%) followed by gizzard shad (91.0%). Paddlefish had a trophic niche which relied on some resources different from those used by other species, and therefore had the lowest trophic overlap with bigheaded carp and other two native fish. The trophic overlap by bigheaded carp onto native fish was typically stronger than the reverse effects from native fish. Average niche overlap between silver carp and native species was as high as 71%, greater than niche overlap between bighead carp and native fish (64%). Our findings indicate that bigheaded carps are a potential threat to a diverse and stable native fish community.

Reexamining the frequency range of hearing in silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp

Silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp (collectively bigheaded carp) are invasive fish that threaten aquatic ecosystems in the upper Midwest United States and the Laurentian Great Lakes. Controlling bigheaded carp is a priority of fisheries managers and one area of focus involves developing acoustic deterrents to prevent upstream migration. For an acoustic deterrent to be effective however, the hearing ability of bigheaded carp must be characterized. A previous study showed that bigheaded carp detected sound up to 3 kHz but this range is narrower than what has been reported for other ostariophysans. Therefore, silver and bighead carp frequency detection was evaluated in response to 100 Hz to 9 kHz using auditory evoked potentials (AEPs). AEPs were recorded from 100 Hz to 5 kHz. The lowest thresholds were at 500 Hz for both species (silver carp threshold: 80.6 ± 3.29 dB re 1 μPa SPL_rms, bighead carp threshold: 90.5 ± 5.75 dB re 1 μPa SPL_rms; mean ± SD). These results provide fisheries managers with better insight on effective acoustic stimuli for deterrent systems, however, to fully determine bigheaded carp hearing abilities, these results need to be compared with behavioral assessments.

Can data from disparate long-term fish monitoring programs be used to increase our understanding of regional and continental trends in large river assemblages?

Understanding trends in the diverse resources provided by large rivers will help balance tradeoffs among stakeholders and inform strategies to mitigate the effects of landscape scale stressors such as climate change and invasive species. Absent a cohesive coordinated effort to assess trends in important large river resources, a logical starting point is to assess our ability to draw inferences from existing efforts. In this paper, we use a common analytical framework to analyze data from five disparate fish monitoring programs to better understand the nature of spatial and temporal trends in large river fish assemblages. We evaluated data from programs that monitor fishes in the Colorado, Columbia, Illinois, Mississippi, and Tallapoosa rivers using non-metric dimensional scaling ordinations and associated tests to evaluate trends in fish assemblage structure and native fish biodiversity. Our results indicate that fish assemblages exhibited significant spatial and temporal trends in all five of the rivers. We also document native species diversity trends that were variable within and between rivers and generally more evident in rivers with higher species richness and programs of longer duration. We discuss shared and basin-specific landscape level stressors. Having a basic understanding of the nature and extent of trends in fish assemblages is a necessary first step towards understanding factors affecting biodiversity and fisheries in large rivers.

Channeling vorticity: Modeling the filter-feeding mechanism in silver carp using μCT and 3D PIV

Invasive silver carp are thriving within eutrophic environments in the United States due in part to their highly efficient filter-feeding mechanism. Like many filter feeding fishes, silver carp utilize modified gill rakers to capture a specific range of food; however, the greatly modified filtering morphology of silver carp allows them to feed on phytoplankton and zooplankton ranging in size from 4-85μm. The filtering apparatus of silver carp is comprised of rigid filtering plates where the outer anatomy of these plates is characterized by long parallel channels (riddled with openings of different sizes) that change in orientation along the length of the plate. Here we investigate the underlying morphology and concomitant hydrodynamics that support the filtration mechanisms of silver and bighead carp. Bighead carp are also invasive filter feeders but their filtering apparatus is morphologically distinct from silver carp composed of thin, flattened individual rakers more similar to that of filter feeders such as Brevoortia sp. or Anchoa sp. Gill rakers from adult silver and bighead carp were scanned using a micro CT scanner at 15.2 micron and 17.0 micron voxel resolution, respectively. Scans were segmented and reconstructed in 3D, printed as a 3D structure in resin, and placed in a 2200 L recirculating flow tank (into which 50 micron buoyant particles had been added) with water flowing across the model in an anteroposterior direction. Using 3D PIV, we determined how particles and fluid interact with the surface of the gill rakers/plates. Filtering plates in silver carp induce strong directed vortical flow whereas the filtering apparatus of bighead carp resulted in a type of haphazard crossflow filtration. The organized vortical flow established by silver carp likely increased the number of interactions that the particle-filled water has with the filtering membrane. This strong vortical organization is maintained only at 0.75BL(body lengths)/s and vortical flow is poorly developed and maintained at slower and faster speeds. Moreover, we found that absolute vorticity magnitude in silver carp is an order of magnitude greater than in bighead carp. Vortical flow established in the silver carp model suggests that this species is a more effective and likely efficient filter feeder than bighead carp, perhaps explaining the success of silver carp as an invasive species.

Making sense of the noise: The effect of hydrology on silver carp eDNA detection in the Chicago area waterway system

Environmental DNA (eDNA) sampling is an emerging tool for monitoring the spread of aquatic invasive species. One confounding factor when interpreting eDNA sampling evidence is that eDNA can be present in the water in the absence of living target organisms, originating from excreta, dead tissue, boats, or sewage effluent, etc. In the Chicago Area Waterway System (CAWS), electric fish dispersal barriers were built to prevent non-native Asian carp species from invading Lake Michigan, and yet Asian carp eDNA has been detected above the barriers sporadically since 2009. In this paper the influence of stream flow characteristics in the CAWS on the probability of invasive Asian carp eDNA detection in the CAWS from 2009 to 2012 was examined. In the CAWS, the direction of stream flow is mostly away from Lake Michigan, though there are infrequent reversals in flow direction towards Lake Michigan during dry spells. We find that the flow reversal volume into the Lake has a statistically significant positive relationship with eDNA detection probability, while other covariates, like gage height, precipitation, season, water temperature, dissolved oxygen concentration, pH and chlorophyll concentration do not. This suggests that stream flow direction is highly influential on eDNA detection in the CAWS and should be considered when interpreting eDNA evidence. We also find that the beta-binomial regression model provides a stronger fit for eDNA detection probability compared to a binomial regression model. This paper provides a statistical modeling framework for interpreting eDNA sampling evidence and for evaluating covariates influencing eDNA detection.

Silver, bighead, and common carp orient to acoustic particle motion when avoiding a complex sound

Behavioral responses of silver carp (Hypopthalmichthys molitrix), bighead carp (H. nobilis), and common carp (Cyprinus carpio) to a complex, broadband sound were tested in the absence of visual cues to determine whether these species are negatively phonotaxic and the roles that sound pressure and particle motion might play mediating this response. In a dark featureless square enclosure, groups of 3 fish were tracked and the distance of each fish from speakers and their swimming trajectories relative to sound pressure and particle acceleration were analyzed before, and then while an outboard motor sound was played. All three species exhibited negative phonotaxis during the first two exposures after which they ceased responding. The median percent time fish spent near the active speaker for the first two trials decreased from 7.0% to 1.3% for silver carp, 7.9% to 1.1% for bighead carp, and 9.5% to 3% for common carp. Notably, when close to the active speaker fish swam away from the source and maintained a nearly perfect 0° orientation to the axes of particle acceleration. Fish did not enter sound fields greater than 140 dB (ref. 1 μPa). These results demonstrate that carp avoid complex sounds in darkness and while initial responses may be informed by sound pressure, sustained oriented avoidance behavior is likely mediated by particle motion. This understanding of how invasive carp use particle motion to guide avoidance could be used to design new acoustic deterrents to divert them in dark, turbid river waters.

Aquatic Nuisance Species in the Great Lakes and Mississippi River Basin-A Risk Assessment in Support of GLMRIS

The U.S. Army Corps of Engineers is conducting the Great Lakes and Mississippi River Interbasin Study to identify the highest risk aquatic nuisance species currently established in either the Mississippi River Basin or the Great Lakes Basin and prevent their movement into a new basin. The Great Lakes and Mississippi River Interbasin Study focuses specifically on aquatic nuisance species movement through the Chicago Area Waterway System, a multi-use waterway connecting the two basins. In support of Great Lakes and Mississippi River Interbasin Study, we conducted a qualitative risk assessment for 33 aquatic nuisance species over a 50-year period of analysis based on the probability of aquatic nuisance species establishing in a new basin and the environmental, economic, and sociopolitical consequences of their establishment. Probability of establishment and consequences of establishment were assigned qualitative ratings of high, medium, or low after considering the species' current location, mobility, habitat suitability, and impacts in previously invaded systems. The establishment and consequence ratings were then combined into an overall risk rating. Seven species were characterized as posing a medium risk and two species as posing a high risk to the Mississippi River Basin. Three species were characterized as posing a medium risk to the Great Lakes Basin, but no high-risk species were identified for this basin. Risk increased over time for some aquatic nuisance species based on the time frame in which these species were considered likely to establish in the new basin. Both species traits and the need to balance multiple uses of the Chicago Area Waterway System must be considered when identifying control measures to prevent aquatic nuisance species movement between the two basins.