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Duarte S, Simões L, Costa FO. Current status and topical issues on the use of eDNA-based targeted detection of rare animal species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166675. [PMID: 37647964 DOI: 10.1016/j.scitotenv.2023.166675] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 08/26/2023] [Accepted: 08/27/2023] [Indexed: 09/01/2023]
Abstract
Animal detection through DNA present in environmental samples (eDNA) is a valuable tool for detecting rare species, that are difficult to observe and monitor. eDNA-based tools are underpinned by molecular evolutionary principles, key to devising tools to efficiently single out a targeted species from an environmental sample. Here, we present a comprehensive review of the use of eDNA-based methods for the detection of targeted animal species, such as rare, endangered, or invasive species, through the analysis of 549 publications (2008-2022). Aquatic ecosystems have been the most surveyed, in particular, freshwaters (74 %), and to a less extent marine (14 %) and terrestrial systems (10 %). Vertebrates, in particular, fish (38 %), and endangered species, have been the focus of most of these studies, and Cytb and COI are the most employed markers. Among invertebrates, assays have been mainly designed for Mollusca and Crustacea species (21 %), in particular, to target invasive species, and COI the most employed marker. Targeted molecular approaches, in particular qPCR, have been the most adopted (75 %), while eDNA metabarcoding has been rarely used to target single or few species (approx. 6 %). However, less attention has been given in these studies to the effects of environmental factors on the amount of shed DNA, the differential amount of shed DNA among species, or the sensitivity of the markers developed, which may impact the design of the assays, particularly to warrant the required detection level and avoid false negatives and positives. The accuracy of the assays will also depend on the availability of genetic data and vouchered tissue or DNA samples from closely related species to assess both marker and primers' specificity. In addition, eDNA-based assays developed for a particular species may have to be refined for use in a new geographic area taking into account site-specific populations, as well as any intraspecific variation.
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Affiliation(s)
- Sofia Duarte
- Centre of Molecular and Environmental Biology (CBMA) and ARNET-Aquatic Research Network, Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.
| | - Luara Simões
- Centre of Molecular and Environmental Biology (CBMA) and ARNET-Aquatic Research Network, Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
| | - Filipe O Costa
- Centre of Molecular and Environmental Biology (CBMA) and ARNET-Aquatic Research Network, Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
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Morreale SJ, Lauber TB, Stedman RC. Anglers as potential vectors of aquatic invasive species: Linking inland water bodies in the Great Lakes region of the US. PLoS One 2023; 18:e0276028. [PMID: 37471327 PMCID: PMC10358920 DOI: 10.1371/journal.pone.0276028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 07/03/2023] [Indexed: 07/22/2023] Open
Abstract
Unimpeded transfer and spread of invasive species throughout freshwater systems is of global concern, altering species compositions, disrupting ecosystem processes, and diverting economic resources. The magnitude and complexity of the problem is amplified by the global connectedness of human movements and the multiple modes of inter-basin transport of aquatic invasive species. Our objective was to trace the fishing behavior of anglers delineating potential pathways of transfer of invasive species throughout the vast inland waters of the Great Lakes of North America, which contain more than 21% of the world's surface freshwater and are among the most highly invaded aquatic ecosystems in the world. Combining a comprehensive survey and a spatial analysis of the movements of thousands of anglers in 12 states within the US portion of the Great Lakes Basin and the Upper Mississippi and Ohio River Basins, we estimated that 6.5 million licensed anglers in the study area embarked on an average of 30 fishing trips over the course of the year, and 70% of the individuals fished in more than one county. Geospatial linkages showed direct connections made by individuals traveling between 99% of the 894 counties where fishing occurred, and between 61 of the 66 sub-watersheds in a year. Estimated numbers of fishing trips to individual counties ranged from 1199-1.95 million; generally highest in counties bordering the Great Lakes. Of these, 79 had more than 10,000 estimated fishing trips originating from anglers living in other counties. Although angler movements are one mechanism of invasive species transfer, there likely is a high cumulative probability of invasive species transport by several million people fishing each year throughout this extensive freshwater network. A comprehensive georeferenced survey, coupled with a spatial analysis of fishing destinations, provides a potentially powerful tool to track, predict, curtail and control the transfer and proliferation of invasive species in freshwater.
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Affiliation(s)
- Stephen J Morreale
- Department of Natural Resources and the Environment, Cornell University, Ithaca, NY, United States of America
| | - T Bruce Lauber
- Department of Natural Resources and the Environment, Cornell University, Ithaca, NY, United States of America
| | - Richard C Stedman
- Department of Natural Resources and the Environment, Cornell University, Ithaca, NY, United States of America
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Sepulveda AJ, Dumoulin CE, Blanchette DL, McPhedran J, Holme C, Whalen N, Hunter ME, Merkes CM, Richter CA, Neilson ME, Daniel WM, Jones DN, Smith DR. When are environmental DNA early detections of invasive species actionable? JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 343:118216. [PMID: 37247541 DOI: 10.1016/j.jenvman.2023.118216] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 04/19/2023] [Accepted: 05/19/2023] [Indexed: 05/31/2023]
Abstract
Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of an eventual infestation. We used a structured decision making (SDM) framework to evaluate appropriate response actions to hypothetical eDNA early detections of an introduced aquatic plant in Sebago Lake (Maine, USA). The results were juxtaposed to a recent study that used a similar SDM approach to evaluate response actions to hypothetical eDNA early detections of introduced mussels in Jordanelle Reservoir (Utah, USA). We found that eDNA early detections were not actionable in Sebago Lake because the plant's invasion potential was spatially constrained and the current management activities provided acceptable levels of mitigation. In Jordanelle Reservoir, eDNA detections were actionable due to high invasion potential and analyses supported management actions to contain the invasion. The divergent outcomes of the two case studies are related to the unique attributes of the habitats and species, highlighting the utility of the SDM approach when considering an eDNA monitoring program. We use these two case studies to present a general SDM framework and a set of heuristics that can be efficiently applied to eDNA early detection rapid response scenarios and other instances associated with indeterminant eDNA detections, especially when there is an imperative to make decisions as quickly as possible.
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Affiliation(s)
- Adam J Sepulveda
- U.S. Geological Survey Northern Rocky Mountain Science Center, Bozeman, MT, 59715, USA.
| | - Christine E Dumoulin
- U.S. Geological Survey, Eastern Ecological Science Center, Leetown, WV, 25430, USA
| | | | - John McPhedran
- Maine Department of Environmental Protection, Augusta, ME, 04333, USA
| | - Colin Holme
- Lakes Environmental Association, Bridgton, ME, 04009, USA
| | | | - Margaret E Hunter
- U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, FL, 32653, USA
| | - Christopher M Merkes
- U.S. Geological Survey, Upper Midwest Environmental Sciences Center, La Crosse, WI, 54603, USA
| | - Catherine A Richter
- U.S. Geological Survey, Columbia Environmental Research Center, Columbia, MO, 65201, USA
| | - Matthew E Neilson
- U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, FL, 32653, USA
| | - Wesley M Daniel
- U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, FL, 32653, USA
| | - Devin N Jones
- U.S. Geological Survey Northern Rocky Mountain Science Center, Bozeman, MT, 59715, USA
| | - David R Smith
- U.S. Geological Survey, Eastern Ecological Science Center, Leetown, WV, 25430, USA
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Where to search: the use of opportunistic data for the detection of an invasive forest pest. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02857-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
AbstractEarly detection is important for the management of invasive alien species. In the last decade citizen science has become an important source of such data. Here, we used opportunistic records from the “LIFE ARTEMIS” citizen science project, in which people submitted records from places where they observed tree pests, to understand the distribution of a rapidly-spreading forest pest: the oak lace bug (Corythucha arcuata) in Slovenia. These citizen science records were not distributed randomly. We constructed a species distribution model for C. arcuata that accounted for the biased distribution of citizen science by using the records of other tree pests and diseases from the same project as pseudo-absences (so-called constrained pseudo-absences), and compared this to a model with pseudo-absences selected randomly from across Slovenia. We found that the constrained pseudo-absence model showed that C. arcuata was more likely to be found in east, in places with more oak trees and at lower elevations, and also closer to highways and railways, indicating introduction and dispersal by accidental human transport. The outputs from the model with random pseudo-absences were broadly similar, although estimates from this model tended to be higher and less precise, and some factors that were significant (proximity to minor roads and human settlements) were artefacts of recorder bias, showing the importance of taking the distribution of recording into account wherever possible. The finding that C. arcuata is more likely to be found near highways allows us to design advice for where future citizen science should be directed for efficient early detection.
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Meriggi C, Drakare S, Polaina Lacambra E, Johnson RK, Laugen AT. Species distribution models as a tool for early detection of the invasive Raphidiopsis raciborskii in European lakes. HARMFUL ALGAE 2022; 113:102202. [PMID: 35287933 DOI: 10.1016/j.hal.2022.102202] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 01/29/2022] [Accepted: 02/04/2022] [Indexed: 06/14/2023]
Abstract
In freshwater habitats, invasive species and the increase of cyanobacterial blooms have been identified as a major cause of biodiversity loss. The invasive cyanobacteria Raphidiopsis raciborskii a toxin-producing and bloom-forming species affecting local biodiversity and ecosystem services is currently expanding its range across Europe. We used species distribution models (SDMs) and regional bioclimatic environmental variables, such as temperature and precipitation, to identify suitable areas for the colonization and survival of R. raciborskii, with special focus on the geographic extent of potential habitats in Northern Europe. SDMs predictions uncovered areas of high occurrence probability of R. raciborskii in locations where it has not been recorded yet, e.g. some areas in Central and Northern Europe. In the southeastern part of Sweden, areas of suitable climate for R. raciborskii corresponded with lakes of high concentrations of total phosphorus, increasing the risk of the species to thrive. To our knowledge, this is the first attempt to predict areas at high risk of R. raciborskii colonization in Europe. The results from this study suggest several areas across Europe that would need monitoring programs to determine if the species is present or not, to be able to prevent its potential colonization and population growth. Regarding an undesirable microorganism like R. raciborskii, authorities may need to start information campaigns to avoid or minimize the spread.
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Affiliation(s)
- Carlotta Meriggi
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| | - Stina Drakare
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | | | - Richard K Johnson
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Ane T Laugen
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden; Bioeconomy Research Team, Novia University of Applied Science, Ekenäs, Finland; Current address: Centre for Coastal Research, Department of Natural Sciences, Agder University, Kristiansand, Norway
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Howard L, van Rees CB, Dahlquist Z, Luikart G, Hand BK. A review of invasive species reporting apps for citizen science and opportunities for innovation. NEOBIOTA 2022. [DOI: 10.3897/neobiota.71.79597] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Smartphone apps have enhanced the potential for monitoring of invasive alien species (IAS) through citizen science. They now have the capacity to massively increase the volume and spatiotemporal coverage of IAS occurrence data accrued in centralised databases. While more reporting apps are developed each year, innovation across diverse functionalities and data management in this field are occurring separately and simultaneously amongst numerous research groups with little attention to trends, priorities and opportunities for improvement. This creates the risk of duplication of effort and missed opportunities for implementing new and existing functionalities that would directly benefit IAS research and management. Using a literature search of Early Detection and Rapid Response implementation, smartphone app development and invasive species reporting apps, we developed a rubric for quantitatively assessing the functionality of IAS reporting apps and applied this rubric to 41 free, English-language IAS reporting apps, available via major mobile app stores in North America. The five highest performing apps achieved scores of 61.90% to 66.35% relative to a hypothetical maximum score, indicating that many app features and functionalities, acknowledged to be useful for IAS reporting in literature, are not present in sampled apps. This suggests that current IAS reporting apps do not make use of all available and known functionalities that could maximise their efficacy. Major implementation gaps, highlighted by this rubric analysis, included limited implementation in user engagement (particularly gamification elements and social media compatibility), ancillary information on search effort, detection method, the ability to report absences and local habitat characteristics. The greatest advancement in IAS early detection would likely result from app gamification. This would make IAS reporting more engaging for a growing community of non-professional contributors and encourage frequent and prolonged participation. We discuss these implementation gaps in relation to the increasingly urgent need for Early Detection and Rapid Response frameworks. We also recommend future innovations in IAS reporting app development to help slow the spread of IAS and curb the global economic and biodiversity extinction crises. We also suggest that further funding and investment in this and other implementation gaps could greatly increase the efficacy of current IAS reporting apps and increase their contributions to addressing the contemporary biological invasion threat.
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Amburgey SM, Yackel Adams AA, Gardner B, Lardner B, Knox AJ, Converse SJ. Tools for increasing visual encounter probabilities for invasive species removal: a case study of brown treesnakes. NEOBIOTA 2021. [DOI: 10.3897/neobiota.70.71379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Early detection and rapid response (EDRR) are essential to identifying and decisively responding to the introduction or spread of an invasive species, thus avoiding population establishment and improving the probability of achieving eradication. However, detection can be challenging at the onset of a species invasion as low population densities can reduce the likelihood of detection and conceal the true extent of the situation until the species is well established. This is doubly challenging if the invading species displays cryptic behavior or is nocturnal, thus further limiting opportunities for its discovery. Survey methods that maximize a searcher’s ability to detect an incipient population are therefore critical for successful EDRR. Brown treesnakes (Boiga irregularis) on Guåhan are a classic cautionary example of the dangers of not detecting an invasion early on, and the risk of their introduction to other islands within the Marianas, Hawai’i and beyond remains. Nocturnal visual surveys are known to detect brown treesnakes of all sizes and are the primary detection tool used by the Brown Treesnake Rapid Response Team, but detection probability remains low in complex forest habitats. As such, we investigated the use of two potential enhancements to nocturnal visual surveys – a live mouse lure and spray scent attractant – that may create hotspots of increased detection probability during surveys. We found that, while brown treesnake detection probabilities were low for all surveys, visual surveys conducted on transects with live mouse lures resulted in detection probabilities that were 1.3 times higher than on transects without live mouse lures. Conversely, the spray scent attractant did not increase the probability of detecting brown treesnakes compared to transects without scent, and in fact had detection probabilities that were 0.66 times lower, though the reasons for this phenomenon are unclear. Unlike scent attractants, live mouse lures likely provide both visual and olfactory cues that attract brown treesnakes to transects and thus provide more opportunities to detect and capture them. These enhancements were trialed on Guåhan, where prey populations are depressed. It remains unclear whether live mouse lures will be as effective for EDRR applications in prey-rich settings.
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Castro KL, Battini N, Giachetti CB, Trovant B, Abelando M, Basso NG, Schwindt E. Early detection of marine invasive species following the deployment of an artificial reef: Integrating tools to assist the decision-making process. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 297:113333. [PMID: 34329910 DOI: 10.1016/j.jenvman.2021.113333] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 06/18/2021] [Accepted: 07/17/2021] [Indexed: 06/13/2023]
Abstract
Early detection and rapid response plans are a set of principles to reduce the establishment, spread and impact of invasive species and it is a critical step in management in marine ecosystems. Two potentially invasive ascidians attached to the hull of a recently sunk fishing vessel were early detected in Patagonia. With the aim of assisting in the management decision-making process during the early steps of a rapid response, we conducted several analyses through different approaches. First, we identified the species through classic taxonomical and genetic analyses. Then, we evaluated the regional and international shipping connectivity to study potential donor regions and finally, we used species distribution models (SDMs) to predict the potential distribution of these species. The potentially invasive ascidians were identified as Styela clava and Styela plicata, and this is the first record for both species in the Nuevo gulf, Patagonia Argentina. Both species have a widespread distribution around the world with strong ecological and economic impacts documented. Shipping traffic analysis suggested that S. plicata could have arrived by secondary spread from regional ports, while the arrival of S. clava was likely to be associated with international shipping traffic. Furthermore, the SDM predicted that S. clava has suitable coastal areas along the entire Southwestern Atlantic shoreline, where it is currently absent. On the contrary, the SDM predicted that further southward spread of S. plicata is unlikely, being limited by the minimum annual temperature. We discussed the different approaches, tools, and expertise integrated in this work in the light of the decision-making process for the early detection of marine invasive species in the Southwestern Atlantic. Moreover, we call attention to the increased creation of artificial habitats through the intentional sinking of ships and the potential consequences of these actions in the conservation of marine ecosystems.
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Affiliation(s)
- Karen Lidia Castro
- Grupo de Ecología en Ambientes Costeros (GEAC), Argentina; Instituto de Biología de Organismos Marinos (IBIOMAR-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina; Centro Regional Universitario Bariloche, Universidad Nacional Del Comahue (CRUB, UNCo), Quintral 1250, San Carlos de Bariloche, Río Negro, Argentina.
| | - Nicolás Battini
- Grupo de Ecología en Ambientes Costeros (GEAC), Argentina; Instituto de Biología de Organismos Marinos (IBIOMAR-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina
| | - Clara Belen Giachetti
- Grupo de Ecología en Ambientes Costeros (GEAC), Argentina; Instituto de Biología de Organismos Marinos (IBIOMAR-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina
| | - Berenice Trovant
- Instituto de Diversidad y Evolución Austral (IDEAus-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina; Universidad Nacional de la Patagonia San Juan Bosco (UNPSJB), 9 de Julio 25, Trelew, Chubut, Argentina
| | - Mariana Abelando
- Dirección de Protección Ambiental, Prefectura Naval Argentina, Av. E. Madero 235, Ciudad Autónoma de Buenos Aires, Argentina; Instituto Universitario de Seguridad Marítima, Prefectura Naval Argentina, Av. Corrientes 345, Ciudad Autónoma de Buenos Aires, Argentina
| | - Néstor Guillermo Basso
- Instituto de Diversidad y Evolución Austral (IDEAus-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina
| | - Evangelina Schwindt
- Grupo de Ecología en Ambientes Costeros (GEAC), Argentina; Instituto de Biología de Organismos Marinos (IBIOMAR-CONICET), Blvd. Brown 2915, Puerto Madryn, Chubut, Argentina
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Rahmanian S, Pourghasemi HR, Pouyan S, Karami S. Habitat potential modelling and mapping of Teucrium polium using machine learning techniques. ENVIRONMENTAL MONITORING AND ASSESSMENT 2021; 193:759. [PMID: 34718878 DOI: 10.1007/s10661-021-09551-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Determining suitable habitats is important for the successful management and conservation of plant and wildlife species. Teucrium polium L. is a wild plant species found in Iran. It is widely used to treat numerous health problems. The range of this plant is shrinking due to habitat destruction and overexploitation. Therefore, habitat suitability (HS) modeling is critical for conservation. HS modeling can also identify the key characteristics of habitats that support this species. This study models the habitats of T. polium using five data mining models: random forest (RF), flexible discriminant analysis (FDA), multivariate adaptive regression splines (MARS), support vector machine (SVM), and generalized linear model (GLM). A total of 119 T. poliumlocations were identified and mapped. According to the RF model, the most important factors describing T. polium habitat were elevation, soil texture, and mean annual rainfall. HS maps (HSMs) were prepared, and habitat suitability was classified as low, medium, high, or very high. The percentages of the study area assigned high or very high suitability ratings by each of the models were 44.62% for FDA, 43.75% for GLM, 43.12% for SVM, 38.91% for RF, 28.72% for MARS, and 39.16% for their ensemble. Although the six models were reasonably accurate, the ensemble model had the highest AUC value, demonstrating a strong predictive performance. The rank order of the other models in this regard is RF, MARS, SVM, FDA, and GLM. HSMs can provide useful output to support the sustainable management of rangelands, reclamation, and land protection.
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Affiliation(s)
- Soroor Rahmanian
- Quantitative Plant Ecology and Biodiversity Research Lab, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, 9177948974, Mashhad, Iran
| | - Hamid Reza Pourghasemi
- Department of Natural Resources and Environmental Engineering, College of Agriculture, Shiraz University, 71441, 65186, Shiraz, Iran.
| | - Soheila Pouyan
- Department of Natural Resources and Environmental Engineering, College of Agriculture, Shiraz University, 71441, 65186, Shiraz, Iran
| | - Sahar Karami
- Quantitative Plant Ecology and Biodiversity Research Lab, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, 9177948974, Mashhad, Iran
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Tshikhudo PP, Nnzeru LR, Rambauli M, Makhado RA, Mudau FN. Phytosanitary risk associated with illegal importation of pest-infested commodities to the South African agricultural sector. S AFR J SCI 2021. [DOI: 10.17159/sajs.2021/8675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
We evaluated the phytosanitary risk associated with illegal importation of pest-infested plant commodities into South Africa. Samples were collected from different South African ports of entry over 8 years (2011 to 2019) and data were analysed descriptively using Statistical Software Package. Pests were frequently detected on commodity species such as Citrus (18.31%), Zea mays (13.22%), Phaseolus vulgaris (12.88%), Musa spp. (9.15%) and Fragaria ananassa (5.08%). The highest number of pests intercepted occurred on fresh fruits (44.06%), followed by grains (26.44%) and vegetables (14.23%). The most intercepted organisms were Callosobruchus rhodesianus (7.79%), Dysmicoccus brevipes (7.11%), Callosobruchus maculates (6.10%) and Phyllosticta citricarpa (4.74%). The majority of intercepted organisms were non-quarantine organisms (70.50%), followed by pests of unknown status (17.28%), quarantine pests (10.84%) and potential quarantine pests (1.35%). Phyllosticta citricarpa, Bactrocera dorsalis, Spodoptera frugiperda and Prostephanus truncatus were the only quarantine pests intercepted in terms of South African regulatory status. The interception was mainly from southern African countries, particularly Mozambique, Zimbabwe and Eswatini. The findings present the level of phytosanitary risk associated with illegal importation and/or non-compliance in regard to plants and plant commodities from different countries through South African ports of entry. Crop production, biodiversity, food security, existing export markets, and access to new export markets could be threatened as importing countries may impose stringent phytosanitary measures to limit the chances of introduction and establishment of quarantine pests into their territories.
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Affiliation(s)
- Phumudzo P. Tshikhudo
- Directorate: Plant Health, Department of Agriculture, Land Reform and Rural Development, Pretoria, South Africa
| | - Livhuwani R. Nnzeru
- Directorate: Biosecurity, Department of Forestry, Fisheries and the Environment, Cape Town, South Africa
| | - Maanda Rambauli
- Directorate: Plant Health, Department of Agriculture, Land Reform and Rural Development, Pretoria, South Africa
| | - Rudzani A. Makhado
- Department of Biodiversity, University of Limpopo, Polokwane, South Africa
| | - Fhathuwani N. Mudau
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
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Ecosystem-Based Adaptation Practices as a Nature-Based Solution to Promote Water-Energy-Food Nexus Balance. SUSTAINABILITY 2021. [DOI: 10.3390/su13031142] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The objective of this study is to evaluate the contributions of ecosystem-based adaptation (EbA) practices to the water–energy–food (WEF) nexus balance, design practical pathways, and analyze barriers towards achievement of EbA-WEF balance. An area case study and descriptive methods were used to analyze data collected from 50 community forests (CFs) spread across three regions in The Gambia. Extensive information from relevant literature sources was also referred to in this study. Fourteen priority EbA practices were established and categorized into four major groups based on their application similarities. Among the anticipated ecosystem services were enhanced water resource conservation, food and feed production, enhanced energy supply, and improved community livelihoods to enhance their resilience. Pathways on how each practice under the broad category contributes to water, energy, and food were developed to demonstrate how they individually and collectively contribute towards the nexus balance. Key enablers identified included a conducive policy framework, institutional support, diverse incentives, information, knowledge, and technology transfer, and climate and non-climate barriers were cited as impediments. The paper concludes by outlining recommendations to overcome the established barriers.
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Integrating across knowledge systems to drive action on chronic biological invasions. Biol Invasions 2020. [DOI: 10.1007/s10530-020-02388-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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13
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Early warning systems in biosecurity; translating risk into action in predictive systems for invasive alien species. Emerg Top Life Sci 2020; 4:453-462. [DOI: 10.1042/etls20200056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 07/15/2020] [Accepted: 07/16/2020] [Indexed: 11/17/2022]
Abstract
Invasive alien species (IAS) are one of the most severe threats to biodiversity and are the subject of varying degrees of surveillance activity. Predictive early warning systems (EWS), incorporating automated surveillance of relevant dataflows, warning generation and dissemination to decision makers are a key target for developing effective management around IAS, alongside more conventional early detection and horizon scanning technologies. Sophisticated modelling frameworks including the definition of the ‘risky’ species pool, and pathway analysis at the macro and micro-scale are increasingly available to support decision making and to help prioritise risks from different regions and/or taxa. The main challenges in constructing such frameworks, to be applied to border inspections, are (i) the lack of standardisation and integration of the associated complex digital data environments and (ii) effective integration into the decision making process, ensuring that risk information is disseminated in an actionable way to frontline surveillance staff and other decision makers. To truly achieve early warning in biosecurity requires close collaboration between developers and end-users to ensure that generated warnings are duly considered by decision makers, reflect best practice, scientific understanding and the working environment facing frontline actors. Progress towards this goal will rely on openness and mutual understanding of the role of EWS in IAS risk management, as much as on developments in the underlying technologies for surveillance and modelling procedures.
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Putting a federal capacities assessment to work: blueprint for a national program for the early detection of and rapid response to invasive species (EDRR). Biol Invasions 2019. [DOI: 10.1007/s10530-019-02177-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
AbstractThis paper responds to national policy directives intended to improve the US government’s capacity to protect national security from the adverse impacts of invasive species. It is the final, synthesizing contribution to a Special Issue of Biological Invasions comprising 12 papers that collectively inform the development and implementation of a national program for the early detection of and rapid response to invasive species (EDRR). The blueprint sets forth policies, goals, and actions to be taken by relevant Executive Branch agencies and components of the Executive Office of the President to develop a national EDRR program, appropriations permitting. It is designed to function as guidance for advancing federal policy through Presidential, Secretarial, and/or Congressional directives. Those committed to protecting national security, the economy, and the well-being of American people are forewarned that our ability to establish a national EDRR program is undermined by the diminishment of the federal workforce; institutional structures, policies, and programs; and directly applicable leadership mechanisms, including the National Invasive Species Council, Invasive Species Advisory Committee, and their managerial Secretariat.
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Abstract
AbstractA watch list is a list of invasive species to be prioritized for surveillance, reporting, and other possible responses in order to reduce the risk of impact to valued assets. Watch lists are basic, yet multi-functional tools for the early detection of and rapid response to invasive species. There is, however, a need to substantially improve watch list standardization, accessibility, and associated communication strategies. We provide guidance to achieve these aims, including an overview of guiding principles and a list of questions to consider when one develops, communicates, and applies invasive species watch lists. Our guidance is intended to support invasive species watch lists development and application globally.
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Federal legal authorities: guidance for application to the early detection of and rapid response to invasive species. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02149-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
AbstractFederal agency programs and associated actions are contingent on having the legal authority to act. There is no single authority established to direct the early detection of and rapid response to invasive species (EDRR). Rather, a patchwork of authorities unevenly addresses various aspects of the suite of EDRR measures. To support the development of national EDRR capacity, it is essential to delineate the federal legal statutes, regulations, and policies that enable or limit invasive species EDRR. Here we set forth general principles and a checklist of actions that agencies can refer to when they construct a more comprehensive EDRR legal and policy framework for addressing invasive species. This guidance is intended to complement the review and analysis of federal authorities contained elsewhere in this issue (Burgos-Rodríguez and Burgiel in Biol Invasions. 10.1007/s10530-019-02148-w, 2019, this issue).
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Burgos-Rodríguez J, Burgiel SW. Federal legal authorities for the early detection of and rapid response to invasive species. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02148-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AbstractThe ability of federal agencies to carry out actions or programs is based on their legal authorities. Efforts to improve federal capacities for the early detection of and rapid response to invasive species (EDRR) require careful delineation of legal authorities, regulations, and policies that would enable or limit EDRR. Building on information provided by federal agencies and an inspection of the US Code and the Code of Federal Regulations, we review and identify relevant authorities to determine federal legal capacities, gaps, and inconsistencies to address EDRR. The EDRR process can be examined in the context of four categories, including (1) explicit invasive species authorities, (2) emergency authorities that could be triggered during a crisis or serve as models for enhanced invasive species EDRR authorities, (3) supporting authorities that could be used under agency discretion, and (4) constraining authorities and legal requirements. Although the Plant Protection Act and the Animal Health Protection Act are comprehensive authorities that address the detection of and response to organisms that threaten plant and livestock health, there is no single authority that encompasses EDRR for all invasive species. Rather, there is a patchwork of authorities that unevenly addresses various aspects of EDRR. In addition to gaps in authority, EDRR efforts could be constrained by environmental compliance, as well as subnational governance and private rights. Although some of these gaps could be closed through legislation, others need to be addressed using the discretionary power of federal agencies and their ability to establish cooperation mechanisms with private and subnational entities.
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Capacity of United States federal government and its partners to rapidly and accurately report the identity (taxonomy) of non-native organisms intercepted in early detection programs. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02147-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
AbstractThe early detection of and rapid response to invasive species (EDRR) depends on accurate and rapid identification of non-native species. The 2016–2018 National Invasive Species Council Management Plan called for an assessment of US government (federal) capacity to report on the identity of non-native organisms intercepted through early detection programs. This paper serves as the response to that action item. Here we summarize survey-based findings and make recommendations for improving the federal government’s capacity to identify non-native species authoritatively in a timely manner. We conclude with recommendations to improve accurate identification within the context of EDRR by increasing coordination, maintaining taxonomic expertise, creating an identification tools clearinghouse, developing and using taxonomic standards for naming and identification protocols, expanding the content of DNA and DNA Barcode libraries, ensuring long-term sustainability of biological collections, and engaging and empowering citizens and citizen science groups.
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Martinez B, Reaser JK, Dehgan A, Zamft B, Baisch D, McCormick C, Giordano AJ, Aicher R, Selbe S. Technology innovation: advancing capacities for the early detection of and rapid response to invasive species. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02146-y] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
AbstractThe 2016–2018National Invasive Species Council (NISC) Management Plan and Executive Order 13751 call for US federal agencies to foster technology development and application to address invasive species and their impacts. This paper complements and draws on an Innovation Summit, review of advanced biotechnologies applicable to invasive species management, and a survey of federal agencies that respond to these high-level directives. We provide an assessment of federal government capacities for the early detection of and rapid response to invasive species (EDRR) through advances in technology application; examples of emerging technologies for the detection, identification, reporting, and response to invasive species; and guidance for fostering further advancements in applicable technologies. Throughout the paper, we provide examples of how federal agencies are applying technologies to improve programmatic effectiveness and cost-efficiencies. We also highlight the outstanding technology-related needs identified by federal agencies to overcome barriers to enacting EDRR. Examples include improvements in research facility infrastructure, data mobilization across a wide range of invasive species parameters (from genetic to landscape scales), promotion of and support for filling key gaps in technological capacity (e.g., portable, field-ready devices with automated capacities), and greater investments in technology prizes and challenge competitions.
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Reaser JK, Burgiel SW, Kirkey J, Brantley KA, Veatch SD, Burgos-Rodríguez J. The early detection of and rapid response (EDRR) to invasive species: a conceptual framework and federal capacities assessment. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02156-w] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
AbstractGlobalization necessitates that we address the negative externalities of international trade and transport, including biological invasion. The US government defines invasive species to mean, “with regard to a particular ecosystem, a non-native organism whose introduction causes, or is likely to cause, economic or environmental harm, or harm to human, animal, or plant health.” Here we address the role of early detection of and rapid response to invasive species (EDRR) in minimizing the impact of invasive species on US interests. We provide a review of EDRR’s usage as a federal policy and planning term, introduce a new conceptual framework for EDRR, and assess US federal capacities for enacting well-coordinated EDRR. Developing a national EDRR program is a worthwhile goal; our assessment nonetheless indicates that the federal government and its partners need to overcome substantial conceptual, institutional, and operational challenges that include establishing clear and consistent terminology use, strategically identifying and communicating agency functions, improving interagency budgeting, facilitating the application of emerging technologies and other resources to support EDRR, and making information relevant to EDRR preparedness and implementation more readily accessible. This paper is the first in a special issue of Biological Invasions that includes 12 complementary papers intended to inform the development and implementation of a national EDRR program.
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Marshall Meyers N, Reaser JK, Hoff MH. Instituting a national early detection and rapid response program: needs for building federal risk screening capacity. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02144-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AbstractThe invasive species issue is inherently a matter of risk; what is the risk that an invasive species will adversely impact valued assets? The early detection of and rapid response to invasive species (EDRR) requires that an assessment of risk is conducted as rapidly as possible. We define risk screening as rapid characterization of the types and degree of risks posed by a population of non-native species in a particular spatio-temporal context. Risk screening is used to evaluate the degree to which various response measures are warranted and justifiable. In this paper, we evaluate the US government’s risk screening programs with a view towards advancing national EDRR capacity. Our survey-based findings, consistent with prior analyses, indicate that risk evaluation by federal agencies has largely been a reactive, ad hoc process, and there is a need to improve information sharing, risk evaluation tools, and staff capacity for risk screening. We provide an overview of the US Department of Agriculture’s Tiered Weed Risk Evaluation and US Fish and Wildlife Service’s Ecological Risk Screening Summaries, two relatively new approaches to invasive species risk screening that hold promise as the basis for future work. We emphasize the need for a clearinghouse of risk evaluation protocols, tools, completed assessments and associated information; development of performance metrics and standardized protocols for risk screening; as well as support for complementary, science-based tools to facilitate and validate risk screening.
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Reaser JK, Simpson A, Guala GF, Morisette JT, Fuller P. Envisioning a national invasive species information framework. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02141-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
AbstractWith a view toward creating a national Early Detection and Rapid Response Program (EDRR) program, the United States National Invasive Species Council Management Plan for 2016–2018 calls for a series of assessments of federal EDRR capacities, including the evaluation of “relevant federal information systems to provide the data and other information necessary for risk analyses/horizon scanning, rapid specimen identification, and rapid response planning.” This paper is a response to that directive. We provide an overview of information management needs for enacting EDRR and discuss challenges to meeting these needs. We then review the history of relevant US policy directives for advancing invasive species information systems and provide an overview of federal invasive species information system capacities, including current gaps and inconsistencies. We conclude with a summary of key principles and needs for establishing a national invasive species information framework. Our findings are consistent with earlier studies and, thus, emphasize the need to act on long-recognized needs. As a supplement to this paper, we have cataloged federal invasive species databases and information tools identified through this work.
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