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Jeon JS, Cho G, Kim S, Riu M, Song J. Actinomycetota, a central constituent microbe during long-term exposure to diazinon, an organophosphorus insecticide. CHEMOSPHERE 2024; 354:141583. [PMID: 38460853 DOI: 10.1016/j.chemosphere.2024.141583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 01/31/2024] [Accepted: 02/28/2024] [Indexed: 03/11/2024]
Abstract
Microbial biodegradation is a primary pesticide remediation pathway. Despite diazinon is one of the most frequently used organophosphate insecticides worldwide, its effect on soil microbial community remains obscure. We hypothesize that diazinon exposure reshapes microbial community, among them increased microbes may play a crucial role in diazinon degradation. To investigate this, we collected soil from an organic farming environment, introduced diazinon, cultivated it in a greenhouse, and then assessed its effects on soil microbiomes at three distinct time points: 20, 40, and 270 days after treatment (DAT). Results from HPLC showed that the level of diazinon was gradually degraded by 98.8% at 270 DAT when compared with day zero, whereas 16S rRNA gene analysis exhibited a significant reduction in the bacterial diversity, especially at the early two time points, indicating that diazinon may exert selection pressure to the bacteria community. Here, the relative abundance of phylum Actinomycetota increased at 20 and 40 DATs. In addition, the bacterial functional gene profile employing PICRUSt2 prediction also revealed that diazinon exposure induced the genomic function related to xenobiotics biodegradation and metabolism in soil, such as CYB5B, hpaC, acrR, and ppkA. To validate if bacterial function is caused by increased relative abundance in diazinon enriched soil, further bacteria isolation resulted in obtaining 25 diazinon degradation strains out of 103 isolates. Notably, more than 70% (18 out of 25) isolates are identified as phylum Actinomycetota, which empirically confirms and correlates microbiome and PICRUSt2 results. In conclusion, this study provides comprehensive information from microbiome analysis to obtaining several bacteria isolates responsible for diazinon degradation, revealing that the phylum Actinomycetota is as a key taxon that facilitates microbial biodegradation in diazinon spoiled soil. This finding may assist in developing a strategy for microbial detoxification of diazinon, such as using an Actinomycetota rich synthetic community (SynCom).
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Affiliation(s)
- Je-Seung Jeon
- Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAS), Rural Development Administration (RDA), Wanju, 55365, Republic of Korea; Industrial Crop Utilization Division, National Institute of Horticultural and Herbal Science, Rural Development Administration (RDA), Eumseong, 27709, Republic of Korea
| | - Gyeongjun Cho
- Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAS), Rural Development Administration (RDA), Wanju, 55365, Republic of Korea
| | - Songhwa Kim
- Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAS), Rural Development Administration (RDA), Wanju, 55365, Republic of Korea
| | - Myoungjoo Riu
- Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAS), Rural Development Administration (RDA), Wanju, 55365, Republic of Korea
| | - Jaekyeong Song
- Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAS), Rural Development Administration (RDA), Wanju, 55365, Republic of Korea.
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Ma Q, Li Q, Wang J, Parales RE, Li L, Ruan Z. Exposure to three herbicide mixtures influenced maize root-associated microbial community structure, function and the network complexity. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 336:122393. [PMID: 37595734 DOI: 10.1016/j.envpol.2023.122393] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 08/13/2023] [Accepted: 08/14/2023] [Indexed: 08/20/2023]
Abstract
Herbicide mixtures are a new and effective agricultural strategy for managing suppress weed resistance and have been widely used in controlling weeding growth in maize fields. However, the potential ecotoxicological impact of these mixtures on the microbial community structure and function within various root-associated niches, remains inadequately understood. Here, the effects of nicosulfuron, mesotrione and atrazine on soil enzyme activity and microbial community structure and function were investigated when applied alone and in combination. The findings indicated that herbicide mixtures exhibit a prolonged half-life compared to single herbicides. Ecological niches are the major factor influencing the structure and functions of the microbial community, with the rhizosphere exhibiting a more intensive response to herbicide stress. Herbicides significantly inhibited the activities of soil functional enzymes, including dehydrogenase, urease and sucrose in the short-term. Single herbicide did not drastically influence the alpha or beta diversity of the soil bacterial community, but herbicide mixtures significantly increased the richness of the fungal community. Meanwhile, the key functional microbial populations, such as Pseudomonas and Enterobacteriaceae, were significantly altered by herbicide stress. Both individual and combined use of the three herbicides reduced the complexity and stability of the bacterial network but increased the interspecific cooperations of fungal community in the rhizosphere. Moreover, by quantification of residual herbicide concentrations in the soil, we showed that the degradation period of the herbicide mixture was longer than that of single herbicides. Herbicide mixtures increased the contents of NO3--N and NH4+-N in the soil in the short-term. Overall, our study provided a comprehensive insight into the response of maize root-associated microbial communities to herbicide mixtures and facilitated the assessment of the ecological risks posed by herbicide mixtures to the agricultural environment from an agricultural sustainability perspective.
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Affiliation(s)
- Qingyun Ma
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, 430070, PR China; State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, CAAS-CIAT Joint Laboratory in Advanced Technologies for Sustainable Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Qingqing Li
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, CAAS-CIAT Joint Laboratory in Advanced Technologies for Sustainable Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Jie Wang
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, CAAS-CIAT Joint Laboratory in Advanced Technologies for Sustainable Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China; College of Life Science, Xinjiang Normal University, Urumqi, 830046, PR China
| | - Rebecca E Parales
- Department of Microbiology and Molecular Genetics, College of Biological Sciences, University of California, Davis, CA, USA
| | - Lin Li
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, 430070, PR China
| | - Zhiyong Ruan
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, CAAS-CIAT Joint Laboratory in Advanced Technologies for Sustainable Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China.
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Donoso-Piñol P, Briceño G, Evaristo JAM, Nogueira FCS, Leiva B, Lamilla C, Schalchli H, Diez MC. Metabolic Profiling and Comparative Proteomic Insight in Respect of Amidases during Iprodione Biodegradation. Microorganisms 2023; 11:2367. [PMID: 37894025 PMCID: PMC10608976 DOI: 10.3390/microorganisms11102367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/11/2023] [Accepted: 09/18/2023] [Indexed: 10/29/2023] Open
Abstract
The fungicide iprodione (IPR) (3-(3,5-dichlorophenyl) N-isopropyl-2,4-dioxoimidazolidine-1-carboxamide) is a highly toxic compound. Although IPR has been restricted, it is still being applied in many places around the world, constituting an environmental risk. The biodegradation of IPR is an attractive option for reducing its residues. In this study, we isolated thirteen IPR-tolerant bacteria from a biopurification system designed to treat pesticides. A study of biodegradation using different strains was comparatively evaluated, and the best degradation rate of IPR was presented by Achromobacter sp. C1 with a half-life (T1/2) of 9 days. Based on a nano-LC-MS/MS analysis for the strains, proteins solely expressed in the IPR treatment were identified by highlighting the strain Achromobacter sp. C1, with 445 proteins primarily involved in the biosynthesis of secondary metabolites and microbial metabolism in diverse environments. Differentially expressed protein amidases were involved in six metabolic pathways. Interestingly, formamidase was inhibited while other cyclases, i.e., amidase and mandelamide hydrolase, were overexpressed, thereby minimizing the effect of IPR on the metabolism of strain C1. The dynamic changes in the protein profiles of bacteria that degrade IPR have been poorly studied; therefore, our results offer new insight into the metabolism of IPR-degrading microorganisms, with special attention paid to amidases.
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Affiliation(s)
- Pamela Donoso-Piñol
- Doctoral Program in Science of Natural Resources, University of La Frontera, Temuco 4780000, Chile; (P.D.-P.); (B.L.)
| | - Gabriela Briceño
- Department of Chemistry Science and Natural Resources, University of La Frontera, Temuco 4780000, Chile
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Joseph A. M. Evaristo
- Laboratory of Proteomics, LADETEC, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro 22775-000, Brazil; (J.A.M.E.); (F.C.S.N.)
| | - Fábio C. S. Nogueira
- Laboratory of Proteomics, LADETEC, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro 22775-000, Brazil; (J.A.M.E.); (F.C.S.N.)
| | - Barbara Leiva
- Doctoral Program in Science of Natural Resources, University of La Frontera, Temuco 4780000, Chile; (P.D.-P.); (B.L.)
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Claudio Lamilla
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Heidi Schalchli
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - María Cristina Diez
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
- Department of Chemical Engineering, University of La Frontera, Temuco 4780000, Chile
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Li Y, Luo Y, Jiang J, He H, Zhang C, Zhao X. Residual behavior and risk assessment of fluopyram, acetamiprid and chlorantraniliprole used individually or in combination on strawberry. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:64700-64709. [PMID: 37072589 DOI: 10.1007/s11356-023-26544-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 03/15/2023] [Indexed: 05/03/2023]
Abstract
In this study, fluopyram (FOR), acetamiprid (ATP), and chlorantraniliprole (CAP) were used individually or in combination at the maximum recommended dose in greenhouse strawberries to research the dissipation dynamics and dietary risks. A multi-residue analytical method for FOR, ATP, and CAP in strawberries using UPLC-MS/MS integrated with the QuEChERS approach was developed with strong linearity (R2 ≧ 0.9990), accuracy (recoveries of 82.62 to 107.79%), and precision (relative standard deviations of 0.58% to 12.73%). The limits of quantification were 0.01 mg kg-1. Field results showed that the half-lives of FOR, ATP and CAP in strawberry fruits were 11.6-12.4 days, 6.1-6.7 days, and 10.9-11.7 days, respectively. The half-lives of the three investigated pesticides showed no significant difference when used individually or in combination. A risk assessment indicated that the dietary intake risks of the three pesticides in grown strawberries were 0.0041 to 7.63% whether applied alone or in combination, which demonstrated that the dietary intake risks of the three pesticides in grown strawberries could be negligible for Chinese male and female consumers, and that even though pesticides were used in combination, there was less cause for concern about the safety. This paper serves as a guide for the safe use of FOR, ATP, and CAP on greenhouse strawberries.
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Affiliation(s)
- Yanjie Li
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Yuqin Luo
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Jinhua Jiang
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Hongmei He
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Changpeng Zhang
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
| | - Xueping Zhao
- Ministry of Agriculture and Rural Affairs Key Laboratory for Pesticide Residue Detection, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
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Zhang F, Sun S, Rong Y, Mao L, Yang S, Qian L, Li R, Zheng Y. Enhanced phytoremediation of atrazine-contaminated soil by vetiver (Chrysopogon zizanioides L.) and associated bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:44415-44429. [PMID: 36690855 DOI: 10.1007/s11356-023-25395-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 01/14/2023] [Indexed: 06/17/2023]
Abstract
The intensive and long-term use of atrazine (ATZ) has led to the contamination of agricultural soils and non-target organisms, posing a series of threats to human health through the transmission of the food chain. In this study, a 60-day greenhouse pot experiment was carried out to explore the phytoremediation by Chrysopogon zizanioides L. (vetiver). The uptake, accumulation, distribution, and removal of ATZ were investigated, and the degradation mechanisms were elucidated. The results showed that the growth of vetiver was inhibited in the first 10 days of the incubation; subsequently, the plant recovered rapidly with time going. Vetiver grass was capable of taking up ATZ from the soil, with root concentration factor ranging from 2.36 to 15.55, and translocating to the shoots, with shoot concentration factor ranging from 7.51 to 17.52. The dissipation of ATZ in the rhizosphere soil (97.51%) was significantly higher than that in the vetiver-unplanted soil (85.14%) at day 60. Metabolites were identified as hydroxyatrazine (HA), deethylatrazine (DEA), deisopropylatrazine (DIA), and didealkylatrazine (DDA) in the samples of the shoots and roots of vetiver as well as the soils treated with ATZ. HA, DEA, DIA, and DDA were reported first time as metabolites of ATZ in shoots and roots of vetiver grown in soil. The presence of vetiver changed the formation and distribution of the dealkylated products in the rhizosphere soil, which remarkably enhanced the occurrence of DEA, DIA, and DDA. Arthrobacter, Bradyrhizobium, Nocardioides, and Rhodococcus were the major atrazine-degrading bacterial genera, which might be responsible for ATZ degradation in the rhizosphere soil. Our findings suggested that vetiver grass can significantly promote ATZ degradation in the soil, and it could be a strategy for remediation of the atrazine-contaminated agricultural soil.
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Affiliation(s)
- Faming Zhang
- Faculty of Plant Protection, Yunnan Agricultural University, Kunming, 650201, People's Republic of China
| | - Shixian Sun
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, Kunming, 650224, People's Republic of China
- National Plateau Wetlands Research Center, Southwest Forestry University, Kunming, 650224, People's Republic of China
| | - Yuhong Rong
- Faculty of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, People's Republic of China
| | - Lili Mao
- Faculty of Plant Protection, Yunnan Agricultural University, Kunming, 650201, People's Republic of China
| | - Shuchun Yang
- Faculty of Resource and Environment, Yunnan Agricultural University, Kunming, 650201, People's Republic of China
| | - Ling Qian
- Faculty of Plant Protection, Yunnan Agricultural University, Kunming, 650201, People's Republic of China
| | - Rongbiao Li
- Faculty of Resource and Environment, Yunnan Agricultural University, Kunming, 650201, People's Republic of China
| | - Yi Zheng
- Faculty of Plant Protection, Yunnan Agricultural University, Kunming, 650201, People's Republic of China.
- Department of President Office, Yunnan Open University, Kunming, 650500, People's Republic of China.
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Saez JM, González SK, Ocante TAL, Bigliardo AL, Briceño GE, Benimeli CS. Actinobacteria bioaugmentation and substrate evaluation for biobeds useful for the treatment of atrazine residues in agricultural fields. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 320:115870. [PMID: 36056489 DOI: 10.1016/j.jenvman.2022.115870] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 06/27/2022] [Accepted: 07/24/2022] [Indexed: 06/15/2023]
Abstract
Biopurification systems (BPS) or biobeds are bioprophylaxis systems to prevent pesticide point-source contamination, whose efficiency relies mostly on the pesticide removal capacity of the biomixture, the majority component of a BPS. The adaptation of the components of the biomixtures to local availabilities is a key aspect to ensure the sustainability of the system. In this work, the removal of atrazine (ATZ) was evaluated in biomixtures formulated with three sugarcane by-products as alternative lignocellulosic substrates. Based on the capacity of actinobacteria to tolerate and degrade diverse pesticides, the effect of biomixtures bioaugmentation with actinobacteria was evaluated as a strategy to enhance the depuration capacity of biobeds. Also, the effect of ATZ and/or the bioaugmentation on microbial developments and enzymatic activities were studied. The biomixtures formulated with bagasse, filter cake, or harvest residue, reached pesticide removal values of 37-41% at 28 d of incubation, with t1/2 between 37.9 ± 0.4 d and 52.3 ± 0.4 d. The bioaugmentation with Streptomyces sp. M7 accelerated the dissipation of the pesticide in the biomixtures, reducing ATZ t1/2 3-fold regarding the controls, and achieving up to 72% of ATZ removal. Atrazine did not exert a clear effect on microbial developments, although most of the microbial counts were less in the contaminated biomixtures at the end of the assay. The bioaugmentation improved the development of the microbiota in general, specially actinobacteria and fungi, regarding the non-bioaugmented systems. The inoculation with Streptomyces sp. M7 enhanced acid phosphatase activity and/or reversed a possible effect of the pesticide over this enzymatic activity.
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Affiliation(s)
- Juliana M Saez
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pje. Caseros, Tucumán, 4000, Argentina; Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán, Miguel Lillo 205, Tucumán, 4000, Argentina
| | - Samanta K González
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pje. Caseros, Tucumán, 4000, Argentina
| | - Teresa A L Ocante
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pje. Caseros, Tucumán, 4000, Argentina
| | - Ana L Bigliardo
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pje. Caseros, Tucumán, 4000, Argentina
| | - Gabriela E Briceño
- Centro de Excelencia en Investigación Biotecnológica Aplicada al medio Ambiente (CIBAMA), Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, 4780000, Chile
| | - Claudia S Benimeli
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Av. Belgrano y Pje. Caseros, Tucumán, 4000, Argentina; Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Catamarca, Av. Belgrano 300, Catamarca, 4700, Argentina.
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Pérez-Villanueva ME, Masís-Mora M, Araya-Valverde E, Rodríguez-Rodríguez CE. Fast removal and detoxification of oxytetracycline, triazine and organophosphate pesticides in a biopurification system. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2022.102452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Pan D, Xu Y, Ni Y, Zhang H, Hua R, Wu X. The efficient persistence and migration of Cupriavidus gilardii T1 contribute to the removal of MCPA in laboratory and field soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 304:119220. [PMID: 35358633 DOI: 10.1016/j.envpol.2022.119220] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 03/18/2022] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
Abstract
The application of exogenous biodegradation strains in pesticide-polluted soils encounters the challenges of migration and persistence of inoculants. In this study, the degradation characteristics, vertical migration capacity, and microbial ecological risk assessment of an enhanced green fluorescent protein (EGFP)-tagged 2-Methyl-4-chlorophenoxyacetic acid (MCPA)-degrading strain Cupriavidus gilardii T1 (EGFP) were investigated in the laboratory and field soils. The optimum remediation conditions for T1 (EGFP) was characterized in soils. Meanwhile, leaching experiments showed that T1 (EGFP) migrated vertically downwards in soil and contribute to the degradation of MCPA at different depths. After inoculation with T1 (EGFP), a high expression levels of EGFP gene was observed at 28 d in the laboratory soil and at 45 d in the field soil. The degradation rates of MCPA were ≥ 60% in the laboratory soil and ≥ 48% in the field soil, indicating that T1 (EGFP) can efficiently and continuously remove MCPA in both laboratory and field conditions. In addition, the inoculation of T1 (EGFP) not only showed no significant impact on the soil microbial community structure but also can alleviate the negative effects induced by MCPA to some extent. Overall, our findings suggested that T1 (EGFP) strain is an ecologically safe resource for the in situ bioremediation of MCPA-contaminated soils.
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Affiliation(s)
- Dandan Pan
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China; Research Academy of Green Development of Anhui Agricultural University, Hefei, 230036, China
| | - Yue Xu
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China
| | - Yaxin Ni
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China
| | - Houpu Zhang
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China; Research Academy of Green Development of Anhui Agricultural University, Hefei, 230036, China
| | - Rimao Hua
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China; Research Academy of Green Development of Anhui Agricultural University, Hefei, 230036, China
| | - Xiangwei Wu
- College of Resources and Environment, Anhui Agricultural University, Key Laboratory of Agri-food Safety of Anhui Province, Hefei, 230036, China; Research Academy of Green Development of Anhui Agricultural University, Hefei, 230036, China.
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Domínguez-Rodríguez VI, Baltierra-Trejo E, Gómez-Cruz R, Adams RH. Microbial growth in biobeds for treatment of residual pesticide in banana plantations. PeerJ 2021; 9:e12200. [PMID: 34616634 PMCID: PMC8464193 DOI: 10.7717/peerj.12200] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 09/02/2021] [Indexed: 11/20/2022] Open
Abstract
Background High doses of ethylenebisdithiocarbamate (EBDC) are used in banana production, and unused pesticide mixture (solution) is often disposed of improperly. This can result in soil and water contamination and present an undue risk to rural communities and the environment. An alternative to reduce the environmental impacts caused by pesticide residues is the biobeds treatment. It is necessary to establish if the composition of the proposed biomixtures supports microbial activity to degrade pesticides in biobeds. This research aimed to evaluate the EBDC effect on the distribution and abundance of microbial populations in polluted biomixtures . Methods For this purpose, a biomixture based on banana stem, mulch, and Fluvisol soil (50:25:25% v/v) was prepared and polluted with 1,000 mg L-1 EBDC. The response variables kinetics were determined every 14 days for three months, such as pH, organic matter, moisture, cation exchange capacity, microbial colonies, and cell counts at three depths within the experimental units. Results EBDC reduced the number of microbial colonies by 72%. Bacterial cells rapidly decreased by 69% and fungi 89% on the surface, while the decrease was gradual and steady at the middle and bottom of the biobed. The microbial populations stabilized at day 42, and the bacteria showed a total recovery on day 84, but the fungi slightly less. At the end of the experiment, the concentration of EBDC in the biomixture was 1.3-4.1 mg L-1. A correlation was found between fungal count (colonies and cells) with EBDC concentration. A replacement of the biomixture is suggested if the bacterial population becomes less than 40 × 106 CFU mL-1 and the fungal population less than 8 × 104 CFU mL-1 or if the direct cell count becomes lower than 50 × 104 cells mL-1 in bacteria and 8 × 102 cells mL-1 in fungi. Conclusion The biomixture based on banana stem supports the microbial activity necessary for the degradation of the EBDC pesticide. It was found that fungi could be used as indicators of the pollutant degradation process in the biomixtures. Microbial counts were useful to establish the mobility and degradation time of the pesticide and the effectiveness of the biomixture. Based on the results, it is appropriate to include the quantification of microbial populations to assess the effectiveness of pesticide degradation and the maturity level of the biomixture.
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Affiliation(s)
| | - Eduardo Baltierra-Trejo
- División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, Villahermosa, Tabasco, Mexico.,Catédras CONACyT, Consejo Nacional de Ciencia y Tecnología, Mexico City, Mexico
| | - Rodolfo Gómez-Cruz
- División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, Villahermosa, Tabasco, Mexico
| | - Randy H Adams
- División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, Villahermosa, Tabasco, Mexico
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Huang W, Lu Y, Chen L, Sun D, An Y. Impact of pesticide/fertilizer mixtures on the rhizosphere microbial community of field-grown sugarcane. 3 Biotech 2021; 11:210. [PMID: 33927998 DOI: 10.1007/s13205-021-02770-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 03/30/2021] [Indexed: 10/21/2022] Open
Abstract
The rhizosphere microbial community is important for plant health and is shaped by numerous environmental factors. This study aimed to unravel the effects of a pesticide/fertilizer mixture on the soil rhizosphere microbiome of field-grown sugarcane. A field trial on sugarcane was conducted in Zhanjian City, Guangdong Province, China, and soil samples from the rhizosphere were collected after clothianidin pesticide and/or organic fertilizer treatments. The effects of pesticide and/or organic fertilizer treatments on the composition, diversity, and predictive function of the rhizosphere microbial communities were examined using 16S rRNA gene and ITS1 amplicon sequencing. Compared with the controls (no pesticide or fertilizer used), the microbial community that resulted from treatment with the pesticide/fertilizer mixture (SPF) had a higher relative bacterial diversity and fungal richness, and contributed more beneficial functions to sugarcane, including xenobiotics biodegradation and metabolism of amino acids. The bacterial and fungal compositions at various taxonomic levels were not significantly different in SPF and SP (pesticide only) treatments compared to treatments without the pesticide, suggesting that the clothianidin addition did not cause a detrimental impact on the soil microbiome. Moreover, five bacterial genera, including Dyella, Sphingomonas, Catenulispora, Mucilaginibacter, and Tumebacillus, were significantly more abundant in the SPF and SP treatments, which could be associated with the pesticide addition. With the addition of organic fertilizers in SPF, the abundances of some soil-beneficial bacteria Bacillus, Paenibacillus, and Brevibacillus were highly increased. Our study provides insights into the interactions between the rhizosphere soil microbiome and pesticide-fertilizer integration, which may help improve the application of pesticide-fertilizer to sugarcane fields. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-02770-3.
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11
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Miao Y, Heintz MB, Bell CH, Johnson NW, Polasko AL, Favero D, Mahendra S. Profiling microbial community structures and functions in bioremediation strategies for treating 1,4-dioxane-contaminated groundwater. JOURNAL OF HAZARDOUS MATERIALS 2021; 408:124457. [PMID: 33189472 DOI: 10.1016/j.jhazmat.2020.124457] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 09/28/2020] [Accepted: 10/30/2020] [Indexed: 06/11/2023]
Abstract
Microbial community compositions and functional profiles were analyzed in microcosms established using aquifer materials from a former automobile factory site, where 1,4-dioxane was identified as the primary contaminant of concern. Propane or oxygen biostimulation resulted in limited 1,4-dioxane degradation, which was markedly enhanced with the addition of nutrients, resulting in abundant Mycobacterium and Methyloversatilis taxa and high expressions of propane monooxygenase gene, prmA. In bioaugmented treatments, Pseudonocardia dioxanivorans CB1190 or Rhodococcus ruber ENV425 strains dominated immediately after augmentation and degraded 1,4-dioxane rapidly which was consistent with increased representation of xenobiotic and lipid metabolism-related functions. Although the bioaugmented microbes decreased due to insufficient growth substrates and microbial competition, they did continue to degrade 1,4-dioxane, presumably by indigenous propanotrophic and heterotrophic bacteria, inducing similar community structures across bioaugmentation conditions. In various treatments, functional redundancy acted as buffer capacity to ensure a stable microbiome, drove the restoration of the structure and microbial functions to original levels, and induced the decoupling between basic metabolic functions and taxonomy. The results of this study provided valuable information for design and decision-making for ex-situ bioreactors and in-situ bioremediation applications. A metagenomics-based understanding of the treatment process will enable efficient and accurate adjustments when encountering unexpected issues in bioremediation.
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Affiliation(s)
- Yu Miao
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - Monica B Heintz
- Arcadis North America, Highlands Ranch, CO 80129, United States
| | | | - Nicholas W Johnson
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - Alexandra LaPat Polasko
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States
| | - David Favero
- Revitalizing Auto Communities Environmental Response (RACER) Trust, Detroit, MI 48226, United States
| | - Shaily Mahendra
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA 90095, United States.
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Zhang H, Song J, Zhang Z, Zhang Q, Chen S, Mei J, Yu Y, Fang H. Exposure to fungicide difenoconazole reduces the soil bacterial community diversity and the co-occurrence network complexity. JOURNAL OF HAZARDOUS MATERIALS 2021; 405:124208. [PMID: 33158656 DOI: 10.1016/j.jhazmat.2020.124208] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 10/02/2020] [Accepted: 10/05/2020] [Indexed: 06/11/2023]
Abstract
Difenoconazole is a triazole fungicide that is widely used worldwide and has been frequently detected in agricultural soils, but its ecotoxicological effect on soil bacterial community remains unknown. Here, the degradation of difenoconazole and its effect on soil bacterial communities were investigated at three concentrations in five different agricultural soils. Difenoconazole degraded faster in non-sterilized soils than in sterilized soils, suggesting that biodegradation is a major contributor to the dissipation of difenoconazole in soils. Exposure to high concentrations of difenoconazole decreased the soil bacterial community diversity in most soils, and this influence was aggravated with the increasing concentration. The effect of difenoconazole on soil bacterial community diversity was also enhanced with the increasing content of organic matter and total nitrogen in soils. Moreover, difenoconazole exposure also reduced the soil bacterial community network complexity and exhibited a concentration-dependent characteristic. In addition, a core bacterial community (57 operational taxonomic units, OTUs) was identified, and some core OTUs were strongly linked to the degradation of difenoconazole in soils. It is concluded that high concentrations of difenoconazole may have a significant effect on the soil bacterial communities, and co-occurrence networks may improve the ecotoxicological risk assessment of fungicides on soil microbiome.
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Affiliation(s)
- Houpu Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Jiajin Song
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Zihan Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Qianke Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Shiyu Chen
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Jiajia Mei
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Yunlong Yu
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Hua Fang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Zhejiang University, Hangzhou 310058, China.
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13
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Aguilar-Romero I, Romero E, Wittich RM, van Dillewijn P. Bacterial ecotoxicity and shifts in bacterial communities associated with the removal of ibuprofen, diclofenac and triclosan in biopurification systems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 741:140461. [PMID: 32886990 DOI: 10.1016/j.scitotenv.2020.140461] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 05/17/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
Abstract
The proliferation and possible adverse effects of emerging contaminants such as pharmaceutical and personal care products (PPCPs) in waters and the environment is a cause for increasing concern. We investigated the dissipation of three PPCPs: ibuprofen (IBP), diclofenac (DCF) and triclosan (TCS), separately and in mixtures, in the ppm range in biopurification system (BPS) microcosms, paying special attention to their effect on bacterial ecotoxicity, as well as bacterial community structure and composition. The results reveal that BPS microcosms efficiently dissipate IBP and DCF with 90% removed after 45 and 84 days of incubation, respectively. However, removal of TCS required a longer incubation period of 127 days for 90% removal. Furthermore, dissipation of the PPCPs was slower when a mixture of all three was applied to BPS microcosms. TCS had an initial negative effect on bacterial viability by a decrease of 34-43% as measured by live bacterial cell counts using LIVE/DEAD® microscopy; however, this effect was mitigated when the three PPCPs were present simultaneously. The bacterial communities in BPS microcosms were more affected by incubation time than by the PPCPs used. Nonetheless, the PPCPs differentially affected the composition and relative abundance of bacterial taxa. IBP and DCF initially increased bacterial diversity and richness, while exposure to TCS generally provoked an opposite effect without full recovery at the end of the incubation period. TCS, which negatively affected the relative abundance of Acidobacteria, Methylophilales, and Legionellales, had the largest impact on bacterial groups. Biomarker OTUs were identified in the BPS microcosms which were constrained to higher concentrations of the PPCPs and thus are likely to harbour degradation and/or detoxification mechanisms. This study reveals for the first time the effect of PPCPs on bacterial ecotoxicity and diversity in biopurification system microcosms and also facilitates the design of further applications of biomixtures to eliminate PPCPs.
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Affiliation(s)
- Inés Aguilar-Romero
- Department of Environmental Protection, Estación Experimental del Zaidín - Consejo Superior de Investigaciones Científicas (EEZ-CSIC), Calle Profesor Albareda 1, 18008 Granada, Spain
| | - Esperanza Romero
- Department of Environmental Protection, Estación Experimental del Zaidín - Consejo Superior de Investigaciones Científicas (EEZ-CSIC), Calle Profesor Albareda 1, 18008 Granada, Spain
| | - Regina-Michaela Wittich
- Department of Environmental Protection, Estación Experimental del Zaidín - Consejo Superior de Investigaciones Científicas (EEZ-CSIC), Calle Profesor Albareda 1, 18008 Granada, Spain
| | - Pieter van Dillewijn
- Department of Environmental Protection, Estación Experimental del Zaidín - Consejo Superior de Investigaciones Científicas (EEZ-CSIC), Calle Profesor Albareda 1, 18008 Granada, Spain..
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Vischetti C, Casucci C, De Bernardi A, Monaci E, Tiano L, Marcheggiani F, Ciani M, Comitini F, Marini E, Taskin E, Puglisi E. Sub-Lethal Effects of Pesticides on the DNA of Soil Organisms as Early Ecotoxicological Biomarkers. Front Microbiol 2020; 11:1892. [PMID: 33013727 PMCID: PMC7461845 DOI: 10.3389/fmicb.2020.01892] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 07/20/2020] [Indexed: 01/13/2023] Open
Abstract
This review describes the researches performed in the last years to assess the impact of pesticide sub-lethal doses on soil microorganisms and non-target organisms in agricultural soil ecosystems. The overview was developed through the careful description and a critical analysis of three methodologies based on culture-independent approaches involving DNA extraction and sequencing (denaturing gradient gel electrophoresis, DGGE; next-generation sequencing, NGS) to characterize the microbial population and DNA damage assessment (comet assay) to determine the effect on soil invertebrates. The examination of the related published articles showed a continuous improvement of the possibility to detect the detrimental effect of the pesticides on soil microorganisms and non-target organisms at sub-lethal doses, i.e., doses which have no lethal effect on the organisms. Considering the overall critical discussion on microbial soil monitoring in the function of pesticide treatments, we can confirm the usefulness of PCR-DGGE as a screening technique to assess the genetic diversity of microbial communities. Nowadays, DGGE remains a preliminary technique to highlight rapidly the main differences in microbial community composition, which is able to give further information if coupled with culture-dependent microbiological approaches, while thorough assessments must be gained by high-throughput techniques such as NGS. The comet assay represents an elective technique for assessing genotoxicity in environmental biomonitoring, being mature after decades of implementation and widely used worldwide for its direct, simple, and affordable implementation. Nonetheless, in order to promote the consistency and reliability of results, regulatory bodies should provide guidelines on the optimal use of this tool, strongly indicating the most reliable indicators of DNA damage. This review may help the European Regulation Authority in deriving new ecotoxicological endpoints to be included in the Registration Procedure of new pesticides.
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Affiliation(s)
- Costantino Vischetti
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Cristiano Casucci
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Arianna De Bernardi
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Elga Monaci
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Luca Tiano
- Department of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Fabio Marcheggiani
- Department of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Maurizio Ciani
- Department of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Francesca Comitini
- Department of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Enrica Marini
- Department of Life and Environmental Sciences, Marche Polytechnic University, Ancona, Italy
| | - Eren Taskin
- Department for Sustainable Food Process, Faculty of Agriculture, Food and Environmental Sciences, Catholic University of Sacred Heart, Piacenza, Italy
| | - Edoardo Puglisi
- Department for Sustainable Food Process, Faculty of Agriculture, Food and Environmental Sciences, Catholic University of Sacred Heart, Piacenza, Italy
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Dias LDA, Gebler L, Niemeyer JC, Itako AT. Destination of pesticide residues on biobeds: State of the art and future perspectives in Latin America. CHEMOSPHERE 2020; 248:126038. [PMID: 32041065 DOI: 10.1016/j.chemosphere.2020.126038] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 01/23/2020] [Accepted: 01/25/2020] [Indexed: 06/10/2023]
Abstract
Land-use intensification with a high demand for pesticides is a consequence of human population increase. Feasible alternatives for correct concentrated residues discharge are necessary to avoid soil and water resources contamination. Biobeds are in situ bioreactors for treating pesticide residues, used by several European and American countries due to its low cost and simple construction, whose efficiency has been scientifically proved for over 20 years. This review presents the state of the art of biobeds in Latin America (LA), identifying advances and future research needs. Factors affecting the efficiency of biobeds are discussed, like ideal temperature, moisture, and microbial communities, followed by methods for evaluating the bioreactor's efficiency. It was necessary to adapt this technology to the climatic and economic conditions of Latin-American countries, due to its European origins. Guatemala is the LA country that uses biobeds as official technology. Brazil, Argentina, Costa Rica and Chile are examples of countries that are actively investigating new substrates and pursuing legal aspects for the establishment of the biobeds. Robust scientific evidences may enable farmers start using this technology, which is an environmentally safe system to protect water resources.
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Affiliation(s)
- Leticia de A Dias
- Programa de Pós-Graduação em Ecossistemas Agrícolas e Naturais (PPGEAN), Universidade Federal de Santa Catarina (UFSC), Campus de Curitibanos, Curitibanos, Santa Catarina, 89520-000, Brasil.
| | - Luciano Gebler
- Estação Experimental de Fruticultura de Clima Temperado (EFCT), EMBRAPA Uva e Vinho, Vacaria, Rio Grande do Sul, Brasil
| | - Júlia C Niemeyer
- Programa de Pós-Graduação em Ecossistemas Agrícolas e Naturais (PPGEAN), Universidade Federal de Santa Catarina (UFSC), Campus de Curitibanos, Curitibanos, Santa Catarina, 89520-000, Brasil
| | - Adriana T Itako
- Programa de Pós-Graduação em Ecossistemas Agrícolas e Naturais (PPGEAN), Universidade Federal de Santa Catarina (UFSC), Campus de Curitibanos, Curitibanos, Santa Catarina, 89520-000, Brasil
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16
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Tortella GR, Cuozzo S, Diez MC, Rodríguez-Rodríguez CE, Durán P, Masís-Mora M, Parada J, Rubilar O. Pesticide dissipation capacity of an organic biomixture used in the agriculture exposed to copper oxychloride. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 190:110121. [PMID: 31896474 DOI: 10.1016/j.ecoenv.2019.110121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Revised: 12/17/2019] [Accepted: 12/21/2019] [Indexed: 06/10/2023]
Affiliation(s)
- G R Tortella
- Facultad de Ingeniería Ciencias y Administración, Departamento de Ingeniería Química, Universidad de La Frontera, Temuco, Chile; Centro de Excelencia en Investigación Biotecnológica Aplicada al Medio Ambiente (CIBAMA), Universidad de La Frontera, Casilla 54-D, Temuco, Chile; Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Casilla 54-D, Temuco, Chile.
| | - S Cuozzo
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Avenida Belgrano y Pasaje Caseros, T40001MVB, Tucumán, Argentina.
| | - M C Diez
- Facultad de Ingeniería Ciencias y Administración, Departamento de Ingeniería Química, Universidad de La Frontera, Temuco, Chile; Centro de Excelencia en Investigación Biotecnológica Aplicada al Medio Ambiente (CIBAMA), Universidad de La Frontera, Casilla 54-D, Temuco, Chile
| | - C E Rodríguez-Rodríguez
- Centro de Investigación en Contaminación Ambiental (CICA), Universidad de Costa Rica, 2060, San José, Costa Rica
| | - P Durán
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Casilla 54-D, Temuco, Chile
| | - M Masís-Mora
- Centro de Investigación en Contaminación Ambiental (CICA), Universidad de Costa Rica, 2060, San José, Costa Rica
| | - J Parada
- Centro de Excelencia en Investigación Biotecnológica Aplicada al Medio Ambiente (CIBAMA), Universidad de La Frontera, Casilla 54-D, Temuco, Chile
| | - O Rubilar
- Facultad de Ingeniería Ciencias y Administración, Departamento de Ingeniería Química, Universidad de La Frontera, Temuco, Chile; Centro de Excelencia en Investigación Biotecnológica Aplicada al Medio Ambiente (CIBAMA), Universidad de La Frontera, Casilla 54-D, Temuco, Chile
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17
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Baćmaga M, Wyszkowska J, Kucharski J. Response of soil microorganisms and enzymes to the foliar application of Helicur 250 EW fungicide on Horderum vulgare L. CHEMOSPHERE 2020; 242:125163. [PMID: 31677518 DOI: 10.1016/j.chemosphere.2019.125163] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 10/17/2019] [Accepted: 10/20/2019] [Indexed: 06/10/2023]
Abstract
The use of fungicides bears the risk of many undesirable outcomes that are manifested in, among other things, changes in the structure and activity of microorganisms. This study aimed at determining the effect of a Helicur 250 EW preparation, used to protect crops against fungal diseases, on the microbiological and biochemical activity of soil and on the development of Horderum vulgare L. The fungicide was sprayed on leaves of spring barley in the following doses (per active substance, i.e. tebuconazole, TEB): 0.046, 0.093, 0.139, 1.395, and 2.790 mg TEB plant-1. The following indices were analyzed in the study: index of microorganisms resistance (RS) to the effects of fungicide, microorganisms colony development index (CD), microorganisms ecophysiological diversity index (EP), genetic diversity of bacteria, enzymatic activity, and effect of the fungicide on spring barley development (IFH). The most susceptible to the effects of the fungicide turned out to be fungi. The metagenomic analysis demonstrated that the bacterial community differed in terms of structure and percentage contribution in the soil exposed to the fungicide from the control soil even at the Phylum level. However, Proteobacteria appeared to be the prevailing taxon in both soils. Bacillus arabhattai, B. soli, and B. simplex occurred exclusively in the control soil, whereas Ramlibacter tataounensis, Azospirillum palatum, and Kaistobacter terrae - exclusively in the soil contaminated with the fungicide. Helicur 250 EW suppressed activities of all soil enzymes except for arylsulfatase. In addition, it proved to be a strong inhibitor of spring barley growth and development.
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Affiliation(s)
- Małgorzata Baćmaga
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland
| | - Jadwiga Wyszkowska
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland.
| | - Jan Kucharski
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland
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Du P, Wu X, Xu J, Dong F, Liu X, Zhang Y, Zheng Y. Clomazone influence soil microbial community and soil nitrogen cycling. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 644:475-485. [PMID: 29990898 DOI: 10.1016/j.scitotenv.2018.06.214] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 06/17/2018] [Accepted: 06/17/2018] [Indexed: 06/08/2023]
Abstract
We designed an indoor mesocosm experiment to investigate the long-term effects of exposure to clomazone, a widely used herbicide, on soil microbial communities and their nitrogen (N) cycling functions. Clomazone was applied to two typical soils from China at three concentrations: 0.8 (the recommended dosage), 8 and 80 mg kg-1 soil dry weight, and the mix was incubated for 90 days. Samples were removed periodically for assay with several techniques. The half-lives of clomazone in this experiment were 11-126 d. Results were significant only for the highest clomazone concentration. Next-generation sequencing of the 16S and 18S rDNA genes revealed that bacterial diversity significantly decreased whereas fungal abundance increased after day 60 but with no detectable effect on the microbial community. Hierarchical cluster and principal coordinates analysis revealed that the bacterial community structure was negatively impacted. Linear discriminant analysis of effect size identified Sphingomonas and Arthrobacter as the predominant bacterial species. Finally, we measured soil NH4+ and NO3- concentrations and used real-time PCR to analyze the abundance of the N-cycling genes, nifH and amoA. In the first 30 days, the NO3--N content and the number of ammonia-oxidizing bacteria increased. N2-fixing bacteria were inhibited after 60 days, but the NH4+-N concentration remained unchanged and was likely provided by ammoniation.
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Affiliation(s)
- Pengqiang Du
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; College of Chemistry, Central China Normal University, No. 152 Luoyu Road, Wuhan 430079, China
| | - Xiaohu Wu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; Key Laboratory of Control of Biological Hazard Factors (Plant Origin) for Agri-product Quality and Safety, Ministry of Agriculture and Rural Affairs of the People's Republic of China, China.
| | - Jun Xu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; Key Laboratory of Control of Biological Hazard Factors (Plant Origin) for Agri-product Quality and Safety, Ministry of Agriculture and Rural Affairs of the People's Republic of China, China
| | - Fengshou Dong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
| | - Xingang Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
| | - Ying Zhang
- Institute of Plant Protection, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China
| | - Yongquan Zheng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
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