Gynichthys diakidnus n. g., n. sp. (Digenea: Cryptogonimidae) from the grunt Plectorhinchus gibbosus (Lacépède, 1802) (Perciformes: Haemulidae) off the Great Barrier Reef, Australia

Revision of Cryptogonimus Osborn, 1903 and Caecincola Marshall et Gilbert, 1905 (Digenea: Cryptogonimidae), supplemental description of Cryptogonimus chili Osborn, 1903, and description of a new species of Caecincola infecting basses (Centrarchiformes: Centrarchidae) in Tennessee and Alabama rivers

We provide a supplemental description of the type species for Cryptogonimus Osborn, 1903 (Digenea: Cryptogonimidae), Cryptogonimus chili Osborn, 1903, based on newly-collected, heat-killed, formalin-fixed specimens infecting rock bass, Ambloplites rupestris (Rafinesque), and smallmouth bass, Micropterus dolomieu Lacepède (both Centrarchiformes: Centrarchidae), from the Duck River, Tennessee (USA). We emend Cryptogonimus to include features observed in the present specimens of its type species and in the descriptions of its congeners: a broad (wider than long) oral sucker, an intestine that bifurcates in the posterior half of the forebody, a bipartite seminal vesicle, a hermaphroditic duct that is dorsal to the ventral sucker, a preovarian seminal receptacle, and a Laurer's canal that opens dorsally at the level of the anterior testis. We describe Caecincola duttonae sp. n. (Cryptogonimidae) infecting largemouth bass, Micropterus salmoides (Lacepède), from Neely Henry Reservoir (Coosa River, Alabama, USA). The new species differs from its congeners by having a combination of a less elongate body, an intestine that bifurcates at the level of the ventral sucker, caeca that terminate at the level of the testes, diagonal testes in the middle of the hindbody, and a vitellarium predominantly distributed in the hindbody. We emend Caecincola Marshall et Gilbert, 1905 (type species Caecincola parvulus Marshall et Gilbert, 1905) to include features of the new species and recently-described congeners: an elongate body, an intestine that bifurcates in the posterior half of the forebody, caeca that extend posteriad beyond the testes, tandem testes, and a vitellarium that is wholly or primarily in the hindbody. Our 28S and ITS2 phylogenetic analyses recovered Caecincola and Cryptogonimus as sister taxa; Caecincola was recovered as paraphyletic with 28S but monophyletic with ITS2. This is the first phylogenetic study of Cryptogonimidae that includes a nucleotide sequence for a species of the type genus Cryptogonimus. We regard Cryptogonimus diaphanus (Stafford, 1904) Miller, 1941 as a species inquirenda.

A new species of Siphoderina Manter, 1934 (Digenea: Cryptogonimidae) infecting the Dory Snapper Lutjanus fulviflamma (Teleostei: Lutjanidae) from the east coast of South Africa

Parasitological assessment of marine fishes at Sodwana Bay in the iSimangaliso Marine Protected Area on the east coast of South Africa revealed a new species of cryptogonimid trematode infecting the pyloric caeca of the Dory Snapper, Lutjanus fulviflamma (Forsskål) (Lutjanidae). The new species is morphologically consistent with the concept of the large genus Siphoderina Manter, 1934; its phylogenetic position within this genus was validated through molecular sequencing of the ITS2 and partial 28S ribosomal DNA sub-regions. We name this species Siphoderina nana n. sp. and comment on the current state of understanding for this genus of cryptogonimids.

Siphoderina hustoni n. sp. (Platyhelminthes: Trematoda: Cryptogonimidae) from the Maori snapper Lutjanus rivulatus (Cuvier) on the Great Barrier Reef

A new cryptogonimid trematode, Siphoderina hustoni n. sp., is reported, collected off Lizard Island, Queensland, Australia, from the Maori snapper Lutjanus rivulatus (Cuvier). The new species is moderately distinctive within the genus. It is larger and more elongate than most other species of Siphoderina Manter, 1934, has the shortest forebody of any, a relatively large ventral sucker, a long post-testicular zone, and is perhaps most recognisable for the substantial space in the midbody between the ventral sucker and ovary devoid of uterine coils and vitelline follicles, the former being restricted to largely posterior to the ovary and the latter distributed from the level of the anterior testis to the level of the ovary. In phylogenetic analyses of 28S ribosomal DNA, the new species resolved with the other nine species of Siphoderina for which sequence data are available, all of which are from Queensland waters and from lutjanid and haemulid fishes. Molecular barcode data were also generated, for the ITS2 ribosomal DNA and cox1 mitochondrial DNA markers. The new species is the first cryptogonimid known from L. rivulatus and the first metazoan parasite reported from that fish in Australian waters.

A review of molecular identification tools for the opisthorchioidea

The superfamily Opisthorchioidea encompasses the families Cryptogonimidae, Opisthorchiidae and Heterophyidae. These parasites depend on the aquatic environment and include marine and freshwater species. Some species, such as Clonorchis sinensis and Opisthorchis viverrini, have a high impact on public health with millions of infected people worldwide and have thus been the object of many studies and tool developments. However, for many species, tools for identification and detection are scarce. Although morphological descriptions have been used and are still important, they are often not efficient on the immature stages of these parasites. Thus, during the past few decades, molecular approaches for parasite identification have become commonplace. These approaches are efficient, quick and reliable. Nonetheless, for some parasites of the superfamily Opisthorchioidea, reference genomic data are limited. This study reviews available genetic data and molecular tools for the identification and/or the detection of this superfamily. Molecular data on this superfamily are mostly based on mitochondrial and ribosomal gene sequence analyses, especially on the cytochrome c oxidase subunit 1 gene and internal transcribed spacer regions respectively.

Stemmatostoma cribbi n. sp. (Digenea: Cryptogonimidae) from Freshwater Fishes in the Wet Tropics Bioregion of Queensland, Australia

A survey of the parasite fauna of freshwater fishes from the Wet Tropics Bioregion in Queensland, Australia, revealed the presence of a new species of Stemmatostoma Cribb, 1986 (Digenea: Cryptogonimidae). Stemmatostoma cribbi n. sp. is described from the intestine and pyloric caeca of 2 species of grunter (Terapontidae), Hephaestus fuliginosus (Macleay) and Hephaestus tulliensis (De Vis), and the Jungle perch (Kuhliidae), Kuhlia rupestris (Lacepède), collected from the Barron and Mulgrave-Russell River drainage divisions in tropical north Queensland, Australia. Stemmatostoma cribbi is primarily distinguished morphologically from the type and only other species in the genus, Stemmatostoma pearsoni Cribb, 1986, in having consistently fewer oral spines (14 in S. cribbi vs. 16 in S. pearsoni). Alignment of novel molecular data for S. cribbi and S. pearsoni revealed that they differ genetically by 26 nucleotides (2.1%) over the 1,258 bp partial large subunit (LSU) region, 1 nucleotide (0.8%) over the 121 bp partial 5.8S region, and 23 nucleotides (7.2%) over the entire 318 bp ITS2 rDNA region. Bayesian inference and maximum likelihood phylogenetic analyses of the partial LSU region for the species of Stemmatostoma sequenced here were used to explore the relationships of these species to other cryptogonimid species reported from freshwater ecosystems.

Phylogenetic Position of Pseudosellacotyla lutzi (Freitas, 1941) (Digenea: Cryptogonimidae), A Parasite of Hoplias malabaricus (Bloch) in South America, through 28S rDNA Sequences, and New Observations of the Ultrastructure of Their Tegument

The freshwater fish digenean Pseudosellacotyla lutzi ( Freitas, 1941 ) Yamaguti, 1954 has had an unsettled taxonomic history, and has at various times been classified as a member of Nanophyetidae, Heterophyidae, Microphallidae, Faustulidae, and Cryptogonimidae. Nine individual specimens of the trahira, Hoplias malabaricus (Bloch, 1794), were sampled in the Paraná River basin, Paraná State, Brazil; 22 specimens of P. lutzi were collected. One specimen of P. lutzi was used to obtain a sequence of the domains D1-D3 of the 28S rRNA gene, and to perform a phylogenetic analysis to assess their position and classification within Plagiorchiida. The resulting tree unequivocally shows that the species, along with acanthostomines, belong to the Cryptogonimidae, corroborating recent findings based on the morphology of the cercariae, and in the characteristics of the life cycle. In addition, the study of the ultrastructure of the tegumental spines through scanning electron microscopy allowed us to characterize them as pectinate spines possessing 3 to 8 digitiform projections at their distal end and extending from the anterior to the posterior extremity of the body. This study also provides the first molecular data for a cryptogonimid from South America.

Two species of Neometadena Hafeezullah & Siddiqi, 1970 (Digenea: Cryptogonimidae) from Moreton Bay, Australia, including the description of Neometadena paucispina n. sp. from Australian Lutjanidae

A survey of the trematode fauna of lutjanid fishes off the east coast of Queensland (QLD), Australia revealed the presence of two species of Neometadena Hafeezullah & Siddiqi, 1970 (Digenea: Cryptogonimidae). Neometadena paucispina n. sp. is described from the intestine and pyloric caeca of Lutjanus fulviflamma (Forsskål) and L. russellii (Bleeker) from Moreton Bay, in southeast QLD. Specimens of the type- and only other species, N. ovata (Yamaguti, 1952) Miller & Cribb, 2008, were recovered from L. carponotatus (Richardson), L. fulviflamma, L. fulvus (Forster), L. russellii, and L. vitta (Quoy & Gaimard) off Lizard Island, on the northern Great Barrier Reef (GBR). Neometadena paucispina is distinguished from N. ovata in having fewer oral spines (55-65 vs 67-80). Alignment of novel molecular data for these two taxa revealed that they differ consistently by 13 nucleotides (1.5%) over the partial large subunit (LSU), 34 nucleotides (6.6%) over the internal transcribed spacer 1 (ITS1), 0 nucleotides over the 5.8S, and 21 nucleotides (7.3%) over the ITS2 rDNA regions. Despite relatively large samples of L. carponotatus, L. fulviflamma and L. russellii from three distinct locations along the east coast of QLD (i.e. Moreton Bay in the south, Heron Island in central QLD and Lizard Island in northern QLD), these two species have been found at only one site each with neither species at Heron Island. These distributions are discussed in the context of the wide distribution of other cryptogonomid species in the same hosts elsewhere in the Indo-West Pacific.

A molecular phylogenetic appraisal of the acanthostomines Acanthostomum and Timoniella and their position within Cryptogonimidae (Trematoda: Opisthorchioidea)

The phylogenetic position of three taxa from two trematode genera, belonging to the subfamily Acanthostominae (Opisthorchioidea: Cryptogonimidae), were analysed using partial 28S ribosomal DNA (Domains 1-2) and internal transcribed spacers (ITS1-5.8S-ITS2). Bayesian inference and Maximum likelihood analyses of combined 28S rDNA and ITS1 + 5.8S + ITS2 sequences indicated the monophyly of the genus Acanthostomum (A. cf. americanum and A. burminis) and paraphyly of the Acanthostominae. These phylogenetic relationships were consistent in analyses of 28S alone and concatenated 28S + ITS1 + 5.8S + ITS2 sequences analyses. Based on molecular phylogenetic analyses, the subfamily Acanthostominae is therefore a paraphyletic taxon, in contrast with previous classifications based on morphological data. Phylogenetic patterns of host specificity inferred from adult stages of other cryptogonimid taxa are also well supported. However, analyses using additional genera and species are necessary to support the phylogenetic inferences from this study. Our molecular phylogenetic reconstruction linked two larval stages of A. cf. americanum cercariae and metacercariae. Here, we present the evolutionary and ecological implications of parasitic infections in freshwater and brackish environments.

The complete mitochondrial genome of the Plectorhinchus cinctus (Teleostei, Haemulidae)

We present the complete mitochondrial genome of the Plectorhinchus cinctus in this study. The mitochondrial genome is 16,523 bp in length and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a control region. The nucleotide compositions of the light strand are 31.30% of C, 27.66% of A, 24.54% of T, and 16.50% of G. With the exception of ND6 and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. All the protein-coding genes begin with an ATG initiation codon except for COX1 with GTG. Five types of termination codons revealed are TAA (ND1, ND2, ATP8, ND4L, ND5), T (COXП, ND3, ND4, CYTB), TA (ATP6, COXШ), AGG (COXІ) and TAG (ND6).

Are cryptic species a problem for parasitological biological tagging for stock identification of aquatic organisms?

The effective use of biological tags in stock assessment relies on the reliable identification of the parasites concerned. This may be compromised if cryptic species are not recognized. Here we review what is known about cryptic species in aquatic hosts and its potential importance in this respect. Although strictly cryptic species may be considered as species which can be distinguished only by molecular data, we accept the far looser but more practical definition of species that cannot be readily distinguished morphologically. Cryptic species appear to have been identified most frequently as occurring in separate host species; this is heartening in that this has no significant impact on tagging studies. But cryptic species have occasionally been identified in single hosts sympatrically and are relatively common in geographically distinct populations of the same host species. Ignorance of both kinds of occurrences has the capacity to undermine the reliability of tagging analysis. We review in detail what is known of intra- and interspecific genetic variation over geographical ranges in the trematodes, based on recent molecular studies. Although the existence of cryptic species and evidence of intraspecific variability may appear daunting, we suspect that these complexities will add, and indeed have already added, to the sophistication of the information that can be derived from tagging studies.