Total nitrogen influence bacterial community structure of active layer permafrost across summer and winter seasons in Ny-Ålesund, Svalbard

Soil Microbial Co-Occurrence Networks Across Climate and Land Use Gradient in Southern Italy

Despite extensive research on microbiota across land use gradients, it remains unclear if microbial co-occurrence relationships exhibit consistent patterns. Here, we assessed microbial co-occurrence networks of seven natural ecosystems-Quercus ilex forest, Fagus sylvatica forest, Abies alba forest, Mediterranean and mountain grasslands, and subalpine and Mediterranean shrublands-and five agroecosystems, including vineyards, horticulture, greenhouse, a polluted agricultural system, and an arid greenhouse. Soil chemistry, such as pH, organic carbon and total nitrogen, was characterised, and soil microbiota were profiled using high-throughput sequencing from 242 soil samples. Our results revealed that mountain grasslands had the highest organic carbon (86.4 g/kg), while the arid greenhouse had the lowest (6.1 g/kg). Mediterranean grasslands had the lowest pH of 5.79, and vineyards had the highest electrical conductivity of 0.901 dS/m. Notably, natural ecosystem networks exhibited greater modularity, with protected horticulture showing exceptionally the highest (0.937), while intensive agriculture within agroecosystems had a significantly lower modularity of 0.282. Modularity and the number of modules were positively correlated with soil P2O5, while network diameter, path length and clustering coefficient were correlated with soil pH. Additionally, edges and nodes number, average degree and microbial diversity were positively associated with organic carbon and total nitrogen. These findings highlight that natural ecosystems foster more complex and resilient microbial networks, underscoring sustainable land management's importance to preserve soil health and microbial diversity.

Profiling and metabolic analysis of microorganisms in bioretention cells vegetated with vetiver and cattail species treating nitrogen and phosphorous

Bioretention cells (BRCs) are increasingly used to treat nutrients in stormwater runoff, with plants known to enhance nitrogen (TN) and phosphorus (TP) uptake. This study investigated the role of rhizosphere microbial communities in TN, TP, and COD removal across three BRCs: an unvegetated control (CP), one vegetated with vetiver (P1), and another with cattail (P2). Detailed microbiome profiling revealed key taxa across phylum, family, and genus levels contributing to nutrient cycling, with P2 showing the highest species richness and diversity based on OTU counts and diversity indices. Proteobacteria, Acidobacteria, and Verrucomicrobiota were the most prominent phyla, aligning with their known roles in nutrient uptake. Key functional taxa included denitrifiers (e.g., Ramlibacter, TRA3-20), Ammonia Oxidizing Bacteria (AOBs) (e.g., MND1, Ellin 6067), and Phosphate Accumulating Organisms (PAOs) (e.g., Comamonadaceae, Vicinamibacteria), supporting TN (>79%) and TP (>84%) removal rates. Distinct microbial compositions between vegetated BRCs confirmed the role of root exudates in microbial selection and enhanced nutrient removal. These findings emphasize the importance of plant-specific rhizosphere effects and microbial selection in optimizing BRC design for stormwater treatment applications.

A psychrotolerant extracellular phosphatase from Krossfjorden sediment bacterium Bacillus cereus KR_O9: purification and functional characterization

This study reports the identification of a phosphatase-producing psychrotolerant bacterium, Bacillus cereus KR_O9, isolated from Arctic Krossfjorden sediments. The extracellular KR_O9 phosphatase was purified to homogeneity through acetone precipitation and ion exchange chromatography, achieving a specific activity of 12.51 U mg⁻1 min⁻1, a 17.3-fold purification, and a 64.94% yield. The molecular mass of the enzyme was estimated as 37 kDa by SDS-PAGE. Km, and Vmax for KR_O9 phosphatase towards substrate p-NPP were determined as 0.033 M L-1, 1.67 mg-1 min-1. The enzyme exhibited optimal activity at 40 °C and pH 6.0, with stability up to ≤ 40 °C and at pH levels ≤ 7.0, highlighting its thermolability and sensitivity to alkaline pH. At 10 mM level, Cu2+, Hg2+, Co2+, Pb2+, urea, EDTA, and GSH significantly stimulated the enzyme, and Ca2+, Zn2+, Mn2+, SDS, and CTAB were, strong inhibitors. The kinetic efficiency, resilience to low to neutral pH, and tolerance to various metal ions, including heavy metals, underscore the potential of B. cereus KR_O9 phosphatase for bioremediation and biofertilizer applications, paving the way for industrial exploration.

PRA Melting-ICE Project: Svalbard 2022 Expeditions Report

Arctic regions are among the fastest warming areas of the planet. Increasing average temperatures over the last five decades have deepened the thawing of the upper-most layer of permafrost across the Arctic, which contains significant amounts of organic carbon. The progressive deepening of seasonal thawing releases carbon that is used by active microorganisms which also produce greenhouse gases, potentially onsetting a positive feedback on global warming. Despite their importance in controlling organic matter degradation and greenhouse gas fluxes to the atmosphere, there is a lack of data on activity and dynamics of microbial communities in High Arctic soils in response to seasonal thaw. This report describes three specific expeditions performed on the Svalbard archipelago, carried out within the framework of the PRA (Italian Arctic Research Program) project Melting-ICE, performed between February and October 2022, reporting site characteristics and samples collected. The project aims to investigate the diversity and activity of active layer microbial communities across a full season thaw cycle, correlating microbial diversity with gas fluxes and composition. During these expeditions, a total of eight different sites were selected to investigate the microbiology and geochemistry of soils, as well as to estimate the gas fluxes from the soil to the atmosphere. The data collected in the field, combined with the results obtained in the laboratory, will provide a snapshot of the seasonal activity of the microbial communities present in the permafrost's active layer. The three campaigns will provide data to estimate the impact of permafrost melting on the carbon cycle and the role of microorganisms in the release of greenhouse gases.

Enhancing Morchella Mushroom Yield and Quality Through the Amendment of Soil Physicochemical Properties and Microbial Community with Wood Ash

Morchella mushroom is a nutritionally rich and rare edible fungus. The traditional cultivation model, which relies on expanding the cultivation area to meet market demand, is no longer sufficient to address the rapidly growing market demand. Enhancing the yield and quality of Morchella without increasing the cultivation area is an intractable challenge in the development of the Morchella mushroom industry. Against this backdrop, this study investigates the effects of different amounts of wood ash (WA) application on the yield and quality of Morchella, and conducts an in-depth analysis in conjunction with soil physicochemical properties and microbial communities. The results indicate that the application of WA improves both the yield and quality of Morchella, with the highest yield increase observed in the WA2 treatment (4000 kg/hm2), which showed a 118.36% increase compared to the control group (CK). The application of WA also modified the physicochemical properties of the soil, significantly improving the integrated fertility index of the soil (IFI, p < 0.05). The soil microbial community structure was altered by the addition of WA. Redundancy analysis (RDA) revealed that pH and total potassium (TK) were the main environmental factors influencing the bacterial community, while pH, TK, and total nitrogen (TN) were the main factors influencing the fungal community structure. In addition, bacterial community diversity tended to increase with higher WA application rates, whereas fungal community diversity generally showed a decreasing trend. Furthermore, the relative abundance of beneficial microbial communities, such as Acidobacteriota, which promote the growth of Morchella, increased with higher WA application, while the relative abundance of detrimental microbial communities, such as Xanthomonadaceae, decreased. Partial least squares path model (PLS-PM) analysis of external factors affecting Morchella yield and quality indicated that WA application can alter soil physicochemical properties and soil microbial communities, thereby improving Morchella yield and quality. Among these factors, soil fertility was identified as the most important determinant of Morchella yield and quality.

Depth-specific distribution of bacterial MAGs in permafrost active layer in Ny Ålesund, Svalbard (79°N)

Arctic soil microbial communities may shift with increasing temperatures and water availability from climate change. We examined temperature and volumetric liquid water content (VWC) in the upper 80 cm of permafrost-affected soil over 2 years (2018-2019) at the Bayelva monitoring station, Ny Ålesund, Svalbard. We show VWC increases with depth, whereas in situ temperature is more stable vertically, ranging from -5°C to 5 °C seasonally. Prokaryotic metagenome-assembled genomes (MAGs) were obtained at 2-4 cm vertical resolution collected while frozen in April 2018 and at 10 cm vertical resolution collected while thawed in September 2019. The most abundant MAGs were Acidobacteriota, Actinomycetota, and Chloroflexota. Actinomycetota and Chloroflexota increase with depth, while Acidobacteriota classes Thermoanaerobaculia Gp7-AA8, Blastocatellia UBA7656, and Vicinamibacteria Vicinamibacterales are found above 6 cm, below 6 cm, and below 20 cm, respectively. All MAGs have diverse carbon-degrading genes, and Actinomycetota and Chloroflexota have autotrophic genes. Genes encoding β -glucosidase, N-acetyl-β-D-glucosaminidase, and xylosidase increase with depth, indicating a greater potential for organic matter degradation with higher VWC. Acidobacteriota dominate the top 6 cm with their classes segregating by depth, whereas Actinomycetota and Chloroflexota dominate below ∼6 cm. This suggests that Acidobacteriota classes adapt to lower VWC at the surface, while Actinomycetota and Chloroflexota persist below 6 cm with higher VWC. This indicates that VWC may be as important as temperature in microbial climate change responses in Arctic mineral soils. Here we describe MAG-based Seqcode type species in the Acidobacteriota, Onstottus arcticum, Onstottus frigus, and Gilichinskyi gelida and in the Actinobacteriota, Mayfieldus profundus.

The role of plant uptake in total phosphorous and total nitrogen removal in vegetated bioretention cells using vetiver and cattail

Bioretention cells have emerged as a prominent strategy for mitigating pollutant loads within urban stormwater runoff. This study delves into the role of plant uptake in the simultaneous removal of nitrogen and phosphorus compounds within these systems. Three bioretention cells-CP, P1, and P2-were constructed using local soil, C33 sand, and gravel. CP served as the unvegetated control, while P1 and P2 were vegetated with vetiver and cattail, respectively. The removal efficiencies of NO₃⁻-N, NH₃⁻-N, NO₂⁻-N, TN, TP, and COD from rainwater were evaluated under saturated and unsaturated conditions. The unvegetated control reactor (CP) achieved TN and TP removal rates of 40.44% and 82.52%, respectively. Reactor P1 (vetiver) demonstrated TN and TP removal rates of 62.92% and 97.19%, respectively. Reactor P2 (cattail) showed TN and TP removal rates of 49.71% and 87.78%, respectively. With the introduction of a saturation zone, TN removal efficiencies increased to 51.69%, 89.22%, and 79.91% for CP, P1, and P2, respectively. However, TP removal efficiencies decreased to 74.81%, 95.04%, and 84.58% for CP, P1, and P2, respectively. Plant tissue uptake tests indicated that vetiver could retain 5 times more TN and twice as much TP compared to cattail. This enhanced performance is attributed to vetiver's high photosynthetic potential as a C4 plant, resilience to varying environmental and nutrient conditions, extensive root network, secretion of oil sesquiterpenes from its root cortex, and the presence of arbuscular mycorrhizal fungi, which secrete glomalin, a substance that promotes water retention and nutrient uptake. Findings from this study indicate that the efficacy of traditional bioretention cells can be augmented through the strategic selection and integration of locally adapted plant species, coupled with the incorporation of saturation zones, to enhance pollutant removal capabilities and resilience to drought conditions.

The hidden network of biocrust successional stages in the High Arctic: Revealing abiotic and biotic factors shaping microbial and metazoan communities

Despite the important role that biocrust communities play in maintaining ecosystem structure and functioning in deglaciated barren soil, few studies have been conducted on the dynamics of biotic communities and the impact of physicochemical characteristics in shaping the different successional stages. In this study an integrated approach encompassing physicochemical parameters and molecular taxonomy was used for identifying the indicator taxa and the presence of intra- and inter-kingdom interactions in five different crust/biocrust successional stages: i) physical crust, ii) cyanobacteria-dominated biocrust, iii) cyanobacteria/moss-dominated biocrust, iv) moss-dominated biocrust and v) bryophyte carpet. The phylum Gemmatimonadota was the bacterial indicator taxon in the early stage, promoting both inter- and intra-kingdom interactions, while Cyanobacteria and Nematoda phyla played a pivotal role in formation and dynamics of cyanobacteria-dominated biocrusts. A multitrophic community, characterized by a shift from oligotrophic to copiotrophic bacteria and the presence of saproxylic arthropod and herbivore insects was found in the cyanobacteria/moss-dominated biocrust, while a more complex biota, characterized by an increased fungal abundance (classes Sordariomycetes, Leotiomycetes, and Dothideomycetes, phylum Ascomycota), associated with highly trophic consumer invertebrates (phyla Arthropoda, Rotifera, Tardigrada), was observed in moss-dominated biocrusts. The class Bdelloidea and the family Hypsibiidae (phyla Rotifera and Tardigrada, respectively) were metazoan indicator taxon in bryophyte carpet, suggesting their potential role in shaping structure and function of this late successional stage. Nitrogen and phosphorus were the main physicochemical limiting factors driving the shift among different crust/biocrust successional stages. Identification and characterization of indicator taxa, biological intra- and inter-kingdom interactions and abiotic factors driving the shift among different crust/biocrust successional stages provide a detailed picture on crust/biocrust dynamics, revealing a strong interconnection among micro- and macrobiota systems. These findings enhance our understanding of biocrust ecosystems in High Arctic, providing valuable insights for their conservation and management in response to environmental shifts due to climate change.

Seasonality in land-ocean connectivity and local processes control sediment bacterial community structure and function in a High Arctic tidal flat

Climate change is altering patterns of precipitation, cryosphere thaw, and land-ocean influxes, affecting understudied Arctic estuarine tidal flats. These transitional zones between terrestrial and marine systems are hotspots for biogeochemical cycling, often driven by microbial processes. We investigated surface sediment bacterial community composition and function from May to September along a river-intertidal-subtidal-fjord gradient. We paired metabarcoding of in situ communities with in vitro carbon-source utilization assays. Bacterial communities differed in space and time, alongside varying environmental conditions driven by local seasonal processes and riverine inputs, with salinity emerging as the dominant structuring factor. Terrestrial and riverine taxa were found throughout the system, likely transported with runoff. In vitro assays revealed sediment bacteria utilized a broader range of organic matter substrates when incubated in fresh and brackish water compared to marine water. These results highlight the importance of salinity for ecosystem processes in these dynamic tidal flats, with the highest potential for utilization of terrestrially derived organic matter likely limited to tidal flat areas (and times) where sediments are permeated by freshwater. Our results demonstrate that intertidal flats must be included in future studies on impacts of increased riverine discharge and transport of terrestrial organic matter on coastal carbon cycling in a warming Arctic.

Rhizosphere microbial community structure differs between constant subzero and freeze-thaw temperature regimes in a subarctic soil

In the Arctic and subarctic, climate change is causing reduced snowpack extent and earlier snowmelt. Shallower snowpack decreases the thermal insulation of underlying soil and results in more freeze-thaw conditions reflective of dynamic air temperatures. The aim of this study was to determine the effect of alternative temperature regimes on overall microbial community structure and rhizosphere recruitment across representatives of three subarctic plant functional groups. We hypothesized that temperature regime would influence rhizosphere community structure more than plant type. Planted microcosms were established using a tree, forb, grass, or no plant control and subjected to either freeze-thaw cycling or static subzero temperatures. Our results showed rhizosphere communities exhibited reduced diversity compared to bulk soils, and were influenced by temperature conditions and to a lesser extent plant type. We found that plants have a core microbiome that is persistent under different winter temperature scenarios but also have temperature regime-specific rhizosphere microbes. Freeze-thaw cycling resulted in greater community shifts from the pre-incubation soils when compared to constant subzero temperature. This finding suggests that wintertime snowpack conditions may be a significant factor for plant-microbe interactions upon spring thaw.

Soil Microbial Communities Associated with Three Arctic Plants in Different Local Environments in Ny-Ålesund, Svalbard

Understanding soil microbial community structure in the Arctic is essential for predicting the impact of climate change on interactions between organisms living in polar environments. The hypothesis of the present study was that soil microbial communities and soil chemical characteristics would vary depending on their associated plant species and local environments in Arctic mature soils. We analyzed soil bacterial communities and soil chemical characteristics from soil without vegetation (bare soil) and rhizosphere soil of three Arctic plants (Cassiope tetragona [L.] D. Don, Dryas octopetala L. and Silene acaulis [L.] Jacq.) in different local environments (coal-mined site and seashore-adjacent site). We did not observe any clear differences in microbial community structure in samples belonging to different plant rhizospheres; however, samples from different environmental sites had distinct microbial community structure. The samples from coal-mined site had a relatively higher abundance of Bacteroidetes and Firmicutes. On the other hand, Acidobacteria was more prevalent in seashore-adjacent samples. The relative abundance of Proteobacteria and Acidobacteria decreased toward higher soil pH, whereas that of Bacteroidetes and Firmicutes was positively correlated with soil pH. Our results suggest that soil bacterial community dissimilarity can be driven by spatial heterogeneity in deglaciated mature soil. Furthermore, these results indicate that soil microbial composition and relative abundance are more affected by soil pH, an abiotic factor, than plant species, a biotic factor.