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Kutluer F. Effect of formaldehyde exposure on phytochemical content and functional activity of Agaricus bisporus (Lge.) Sing. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:35581-35594. [PMID: 38730218 PMCID: PMC11136853 DOI: 10.1007/s11356-024-33625-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 05/06/2024] [Indexed: 05/12/2024]
Abstract
In this study, the effect of formaldehyde on phytochemical content and antioxidant activity of Agaricus bisporus was investigated. Synthetic compost based on wheat straw was prepared by fermentation and disinfection. After steam pasteurization, 5 g of A. bisporus mycelia were inoculated into 1 kg of compost. To determine the effects of formaldehyde, 2, 4, and 6% concentrations were added to the composts, while compost without formaldehyde was used for the control group. The harvesting period was set at 10 weeks. Total phenolic and flavonoid content, macro- and microelement profile, and phenolic content were analyzed in the harvested A. bisporus samples. Macro- and microelement content was determined by ICP-OES, and phenolic compound profile was determined by LC-MS/MS analysis. Formaldehyde levels in A. bisporus samples were determined by the acetylacetone spectrophotometry method. The antioxidant capacity of A. bisporus samples was determined by DPPH scavenging activity; antimutagenic effects of samples were determined by Allium test. Application of 2, 4, and 6% formaldehyde resulted in a 1.12-, 1.19-, and 2.07-fold reduction in total phenolic content, respectively. The total phenolic content was reduced between 34.4% and 71.8%. These changes were confirmed by LC-MS/MS analysis. Compounds such as protocatechuic acid, salicylic acid, ferulic acid, and 4-OH benzoic acid, which were detected in the control group, could not be detected in the samples treated with 6% formaldehyde, and it was found that the application of formaldehyde reduced the phenolic content. Similar changes were also observed in macro- and microelements, and significant changes in elemental contents were observed after formaldehyde application. While the presence of formaldehyde at a low level, which may be due to natural production, was detected in the control group, a residue of 11.41 ± 0.93 mg/kg was determined in the 6% FMD applied group. All these changes resulted in a decrease in the antioxidant activity of A. bisporus. The DPPH scavenging activity, which was determined in the range of 21.6-73.3% in the control samples, decreased to 12.3-56.7% in the samples treated with formaldehyde. These results indicate that the application of formaldehyde at different stages of A. bisporus cultivation leads to significant changes in the nutritional value and biological activity of A. bisporus.
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Affiliation(s)
- Fatih Kutluer
- Department of Herbal and Animal Production, Kırıkkale Vocational School, Kırıkkale University, Kırıkkale, Turkey.
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Himtaş D, Yalçin E, Çavuşoğlu K, Acar A. In-vivo and in-silico studies to identify toxicity mechanisms of permethrin with the toxicity-reducing role of ginger. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:9272-9287. [PMID: 38191734 PMCID: PMC10824804 DOI: 10.1007/s11356-023-31729-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 12/22/2023] [Indexed: 01/10/2024]
Abstract
In this study, the toxic effects of permethrin on Allium cepa L. and the protective role of Zingiber officinale rhizome extract (Zoex) were investigated. In this context, 6 different groups were formed. While the control group was treated with tap water, the groups II and III were treated with 10 µg/mL and 20 µg/mL Zoex, respectively, and the group IV was treated with 100 µg/L permethrin. The protective effect of Zoex against permethrin toxicity was studied as a function of dose, and groups V and VI formed for this purpose were treated with 10 µg/mL Zoex + 100 µg/L permethrin and 20 µg/mL Zoex + 100 µg/L permethrin, respectively. After 72 h of germination, cytogenetic, biochemical, physiological, and anatomical changes in meristematic cells of A. cepa were studied. As a result, permethrin application decreased the mitotic index (MI) and increased the frequency of micronuclei (MN), and chromosomal abnormalities. The increase in malondialdehyde (MDA), superoxide dismutase (SOD), and catalase (CAT) and the decrease in glutathione (GSH) indicate that permethrin causes oxidative damage. Compared to the control group, a 68.5% decrease in root elongation (p < 0.05) and an 81.8% decrease (p < 0.05) in weight gain were observed in the permethrin-treated group. It was found that the application of Zoex together with permethrin resulted in regression of all detected abnormalities, reduction in the incidence of anatomical damage, MN and chromosomal aberrations, and improvement in MI rates. The most significant improvement was observed in group VI treated with 20 µg/mL Zoex, and Zoex was also found to provide dose-dependent protection. The toxicity mechanism of permethrin was also elucidated by molecular docking and spectral studies. From the data obtained during the study, it was found that permethrin has toxic effects on A. cepa, a non-target organism, while Zoex plays a protective role by reducing these effects.
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Affiliation(s)
- Damla Himtaş
- Department of Biology, Institute of Natural Sciences, University of Giresun, 28200, Giresun, Turkey
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, University of Giresun, 28200, Giresun, Turkey.
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, University of Giresun, 28200, Giresun, Turkey
| | - Ali Acar
- Department of Medical Services and Techniques, Vocational School of Health Services, University of Giresun, 28200, Giresun, Turkey
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3
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Çakir F, Kutluer F, Yalçin E, Çavuşoğlu K, Acar A. Deep neural network and molecular docking supported toxicity profile of prometryn. CHEMOSPHERE 2023; 340:139962. [PMID: 37633608 DOI: 10.1016/j.chemosphere.2023.139962] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 08/21/2023] [Accepted: 08/23/2023] [Indexed: 08/28/2023]
Abstract
In this study, the versatile toxicity profile of prometryn herbicide on Allium cepa was investigated. In this context, 4 different groups were formed. While the control group was treated with distilled water, Groups II, III and IV were treated with 200 mg/L, 400 mg/L and 800 mg/L prometryn, respectively. After 72 h of germination, cytogenetic, biochemical, physiological and anatomical changes were investigated. As a result increase in malondialdehyde levels, decrease in glutathione level, changes in superoxide dismutase and catalase activities in root tip cells show that prometryn causes oxidative stress. The decrease in mitotic index values and the increase in the frequency of micronucleus and chromosomal abnormalities observed after prometryn treatment indicate genotoxic effects. The genotoxic effects may be due to the induced oxidative stress as well as the promethryn-DNA interaction. Molecular docking analyses revealed that prometryn interacts with various bases in DNA. As a result of the Comet assay, exposure to prometryn was found to cause DNA fragmentation. In physiological parameters final weight, germination percentage and root length decreased by 23.8%, 59.1% and 87.3%, respectively, in the 800 mg/L prometryn applied group. Deep neural network (DNN) model was optimized to predict the effects of different doses of prometryn on 4 different endpoints: micronucleus, mitotic index, chromosomal abnormalities and DNA Damage. The predicted data was found to be very similar to the actual data. The performance of the model was evaluated using MAE, MAPE, RMSE and R2, and these metrics indicate that the model performed well. Overall, the findings of this study suggest that the DNN model developed here is a valuable tool for predicting genotoxicity biomarkers in response to the application doses of prometryn, and has the potential to contribute to the development of safer and more sustainable agricultural practices.
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Affiliation(s)
- Feride Çakir
- Department of Biology, Institute of Science, Giresun University, Giresun, Turkiye.
| | - Fatih Kutluer
- Department of Herbal and Animal Production, Kırıkkale Vocational School, Kırıkkale University, Kırıkkale, Turkiye.
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkiye.
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkiye.
| | - Ali Acar
- Department of Medical Services and Techniques, Vocational School of Health Services, Giresun University, Giresun, Turkiye.
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Akgeyik AU, Yalçın E, Çavuşoğlu K. Phytochemical fingerprint and biological activity of raw and heat-treated Ornithogalum umbellatum. Sci Rep 2023; 13:13733. [PMID: 37612432 PMCID: PMC10447479 DOI: 10.1038/s41598-023-41057-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 08/21/2023] [Indexed: 08/25/2023] Open
Abstract
The plants that we use as food in our daily diet and as risk preventers against many diseases have many biological and pharmacological activities. The heat treatments applied during the cooking of the plants cause changes in the phytochemical content and bioactivity. In this study, the phytochemical fingerprint and biological activities of raw and heat-treated extracts of Ornithogalum umbellatum L., which is widely consumed in the Black Sea region, were investigated. The bulb and leaf parts of the plant consumed as food were dried in an oven at 35 °C and then ground into powder. For heat treatment, the plant was boiled at 100 °C for 20 min. Differences in phytochemical contents of raw and heat-treated extracts were determined by ICP-MS, LC-MS/MS, and FTIR analysis. Biological activity was investigated with antiradical, antimicrobial, antimutagenic and antiproliferative activity tests. In this way, the effect of heat treatment on both the phytochemical content and biological activity of the O. umbellatum extract was determined. Gallic acid, procateuic acid and caffeic acid were found as the main compounds in the O. umbellatum extract, while the presence of procateuic aldehyde, vanillin and kaempferol in minor proportions was determined. There was a significant decrease in phenolic compound levels after heat treatment and gallic acid content decreased by 92.6%, procateuic acid content by 90% and caffeic acid content by 84.8%. Significant differences were detected in macro and micro element levels after heat treatment in ICP-MS results. While Cd, Ba and Zn levels of the raw extract increased; Na, Mg, K, Fe, U, Co levels decreased significantly. In FTIR spectrum, shifts and disappearances were observed in some of the vibrations and the emergence of new vibrations was also determined after heat treatment. Raw extract exhibited strong scavenging activity against H2O2 and DPPH and had a broad spectrum antimicrobial property. As a result of heat application, regressions were detected in antiradicalic, antibacterial and antifungal activities. Antimutagenic and antiproliferative activities were determined by the Allium test and a significant decrease in both activities and loss of activity against some chromosomal abnormalities were determined after heat treatment. While the antiproliferative activity of the raw extract was 20%, the activity of the heat-treated extract decreased to 7.6%. The raw extract showed the strongest antimutagenic effect with 69.8% against the unequal distribution of chromatin. Similarly, the antimutagenic activity of the extract, which reduced the bridges by 56.1%, decreased to 0.74% after heat treatment and almost lost its antimutagenic activity. The biological activities of raw O. umbellatum are closely related to the major compounds it contains, and the decrease in the levels of these compounds with the effect of heat was reflected in the activity. Studies investigating the phytochemical contents of plants are very important and the studies investigating biological activities related to phytochemical content are more remarkable. In this study, the phytochemical fingerprint of O. umbellatum was determined, its biological activities were related to the compounds it contained, and the biological activity was found to be heat sensitive.
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Affiliation(s)
- Aytül Uzun Akgeyik
- Science and Technology Application and Research Center, Yozgat Bozok University, Yozgat, Turkey
| | - Emine Yalçın
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey.
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
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Altunkaynak F, Çavuşoğlu K, Yalçin E. Detection of heavy metal contamination in Batlama Stream (Turkiye) and the potential toxicity profile. Sci Rep 2023; 13:11727. [PMID: 37474634 PMCID: PMC10359263 DOI: 10.1038/s41598-023-39050-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 07/19/2023] [Indexed: 07/22/2023] Open
Abstract
In this study, heavy metal pollution in Batlama stream flowing into the Black Sea from Giresun (Turkiye) province and the toxicity induced by this pollution were investigated by Allium test. Heavy metal concentrations in stream water were analyzed by using ICP-MS. Germination percentage, weight gain, root length, micronucleus (MN), mitotic index (MI), chromosomal abnormalities (CAs), proline, chlorophyll, malondialdehyde (MDA), antioxidant enzyme activities were used as indicators of physiological, cytogenetic and biochemical toxicity. In addition, Comet assay was performed for detecting DNA fragmentation. Anatomical changes caused by heavy metals in the root meristem cells were observed under the microscope. A. cepa bulbs are divided into two groups as control and treatment. The bulbs in the control group were germinated with tap water and the bulbs in the treatment group were germinated with stream water. As a result, heavy metals such as Al, Ti and Co and radioactive heavy metals such as Rb, Sr, Sb and Ba were detected in the stream water above the acceptable parametric values. Heavy metals in the water caused a decrease in germination, root elongation, weight gain, MI and chlorophyll values, and an increase in MDA, proline, SOD, CAT, MN and CAs values. Comet assays indicated the presence of severe DNA damage. In addition, heavy metals in stream water caused different types of CAs and anatomical damage in root meristem cells. As a result, it was determined that there is intense heavy metal pollution in the stream water and this pollution promotes multi-dimensional toxicity in A. cepa, which is an indicator organism. For this reason, the first priority should be to prevent pollution of water resources in order to prevent heavy metal-induced toxicity in water.
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Affiliation(s)
- Fikriye Altunkaynak
- Department of Biology, Institute of Science, Giresun University, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey.
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Bakir Çilesizoğlu N, Yalçin E, Çavuşoğlu K, Sipahi Kuloğlu S. Qualitative and quantitative phytochemical screening of Nerium oleander L. extracts associated with toxicity profile. Sci Rep 2022; 12:21421. [PMID: 36504046 PMCID: PMC9742154 DOI: 10.1038/s41598-022-26087-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 12/09/2022] [Indexed: 12/14/2022] Open
Abstract
In this study, phytochemical analysis and toxicity profile of leaf and flower extracts of Nerium oleander L. species collected from Giresun province (Turkey) were investigated. In phytochemical analyzes, the cardiac glycoside, alkaloid, saponin and tannin contents of the extracts were analyzed qualitatively and quantitatively. The physiological effects of extracts were determined by examining root elongation, weight gain and germination rates. Biochemical effects were determined by measuring the levels of malondialdehyde (MDA), glutathione (GSH), superoxide dismutase (SOD) and catalase (CAT), which are indicators of oxidative stress. Cytotoxic and genotoxic effects were investigated by mitotic index (MI), micronucleus (MN) and chromosomal abnormality (CA) tests. N. oleander leaf and flower extract applications caused significant decreases in the physiological parameters of Allium bulbs. SOD and CAT activity in root tip cells increased significantly after the application of leaf extract compared to the control group. Similar changes were observed in the application of flower extract, but these increases were found to be at a lower level compared to the increases induced by the leaf extract. An increase in MDA levels and a decrease in GSH levels were observed in groups treated with leaf and flower extracts. These changes show that the extracts cause deterioration in antioxidant/oxidant balance. It was determined that the extracts, which caused a decrease in MI rates and an increase in MN and CAs frequencies, showed the most prominent cytotoxic and genotoxic effects at 250 μg/mL doses. These toxic effects were associated with the phytochemical content of the extracts, and it was thought that cardiac glycosides and alkaloids, whose presence were detected in qualitative and quantitative analyzes, may play an important role in toxicity. Studies investigating the therapeutic properties of plants as well as their toxic effects are insufficient, which leads to the fact that plants exhibiting potential toxicity are not well known. Therefore, this study will lead many studies on the toxicity profile of the phytochemical contents of plants. Therefore, this study will draw attention to the investigation of the toxicity profile and phytochemical contents of plants and will lead to similar studies.
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Affiliation(s)
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, Giresun University, 28200, Giresun, Turkey.
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, 28200, Giresun, Turkey
| | - Selin Sipahi Kuloğlu
- Department of Biology, Institute of Science, Giresun University, Giresun, Turkey
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Kuloğlu SS, Yalçin E, Çavuşoğlu K, Acar A. Dose-dependent toxicity profile and genotoxicity mechanism of lithium carbonate. Sci Rep 2022; 12:13504. [PMID: 35931740 PMCID: PMC9355992 DOI: 10.1038/s41598-022-17838-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 08/01/2022] [Indexed: 11/29/2022] Open
Abstract
The increasing widespread use of lithium, which is preferred as an energy source in batteries produced for electric vehicles and in many electronic vehicles such as computers and mobile phones, has made it an important environmental pollutant. In this study, the toxicity profile of lithium carbonate (Li2CO3) was investigated with the Allium test, which is a bio-indicator test. Dose-related toxic effects were investigated using Li2CO3 at doses of 25 mg/L, 50 mg/L, and 100 mg/L. The toxicity profile was determined by examining physiological, cytotoxic, genotoxic, biochemical and anatomical effects. Physiological effects of Li2CO3 were determined by root length, injury rate, germination percentage and weight gain while cytotoxic effects were determined by mitotic index (MI) ratio and genotoxic effects were determined by micronucleus (MN) and chromosomal aberrations (CAs). The effect of Li2CO3 on antioxidant and oxidant dynamics was determined by examining glutathione (GSH), malondialdehyde (MDA), catalase (CAT) and superoxide dismutase (SOD) levels, and anatomical changes were investigated in the sections of root meristematic tissues. As a result, Li2CO3 exhibited a dose-dependent regression in germination-related parameters. This regression is directly related to the MI and 100 mg/L Li2CO3 reduced MI by 38% compared to the control group. MN and CAs were observed at high rates in the groups treated with Li2CO3. Fragments were found with the highest rate among CAs. Other damages were bridge, unequal distribution of chromatin, sticky chromosome, vagrant chromosome, irregular mitosis, reverse polarization and multipolar anaphase. The genotoxic effects were associated with Li2CO3-DNA interactions determined by molecular docking. The toxic effects of Li2CO3 are directly related to the deterioration of the antioxidant/oxidant balance in the cells. While MDA, an indicator of lipid peroxidation, increased by 59.1% in the group administered 100 mg/L Li2CO3, GSH, which has an important role in cell defense, decreased by 60.8%. Significant changes were also detected in the activities of SOD and CAT, two important enzymes in antioxidant defense, compared to the control. These toxic effects, which developed in the cells belonging to the lithium-treated groups, were also reflected in the tissue anatomy, and anatomical changes such as epidermis cell damage, cortex cell damage, flattened cell nucleus, thickening of the cortex cell wall and unclear vascular tissue were observed in the anatomical sections. The frequency of these changes also increased depending on the Li2CO3 dose. As a result, Li2CO3, which is one of the lithium compounds, and has become an important contaminant in the environment with increasing technological developments, caused a combined and versatile toxicity in Allium cepa L. meristematic cells, especially by causing deterioration in antioxidant/oxidant dynamics.
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Affiliation(s)
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
| | - Ali Acar
- Department of Medical Services and Techniques, Vocational School of Health Services, Giresun University, Giresun, Turkey.
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Çavuşoğlu K, Kalefetoğlu Macar T, Macar O, Çavuşoğlu D, Yalçın E. Comparative investigation of toxicity induced by UV-A and UV-C radiation using Allium test. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:33988-33998. [PMID: 35032264 PMCID: PMC8760590 DOI: 10.1007/s11356-021-18147-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
Abstract
Organisms are increasingly exposed to ultraviolet (UV) rays of sunlight, due to the thinning of the ozone layer and its widespread use in sterilization processes, especially against the SARS-CoV-2 virus. The present study was conducted with the purpose of evaluating the damages of UV-A and UV-C radiations in Allium cepa L. roots. The effects of two different types of UV on some physiological, biochemical, cytogenotoxic, and anatomical parameters were investigated in a multifaceted study. Three groups were formed from Allium bulbs, one of which was the control group. One of the other groups was exposed to 254 nm (UV-C) and the other to 365 nm (UV-A) UV. Growth retardation effect of UV was investigated with respect to germination percentage, total weight gain, and root elongation, while cytogenotoxicity arisen from UV exposure was analyzed using mitotic index (MI) and chromosomal aberration (CA) and micronucleus (MN) frequency. Oxidative stress due to UV application was investigated based on the accumulation of malondialdehyde (MDA) and the total activities of superoxide dismutase (SOD) and catalase (CAT) enzymes. Also, anatomical changes induced by UV-A and UV-C were analyzed in root meristematic cells. UV treatments caused significant reductions in growth-related parameters. Both UV treatments caused a significant increase in MDA levels and induction of SOD and CAT enzymes in root meristematic cells. A decrease in MI and an increase in the frequency of MN and CAs were observed in root tip cells, indicating the cytogenotoxic effect of UV application. Anatomical damages such as epidermis cell damage, cortex cell damage, necrotic zones, giant cell nucleus, and indistinct transmission tissue occurred in cells exposed to UV. All of the physiological, biochemical, cytogenetic, and anatomical damages observed in this study were more severe in cells treated with UV-C compared to UV-A. This study suggested that UV exposure triggered growth inhibition, cytogenotoxicity, oxidative stress, and meristematic cell damages in A. cepa roots depending on the wavelength.
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Affiliation(s)
- Kültiğin Çavuşoğlu
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
| | - Tuğçe Kalefetoğlu Macar
- Department of Food Technology, Şebinkarahisar School of Applied Sciences, Giresun University, 28400, Giresun, Turkey.
| | - Oksal Macar
- Department of Food Technology, Şebinkarahisar School of Applied Sciences, Giresun University, 28400, Giresun, Turkey
| | - Dilek Çavuşoğlu
- Department of Plant and Animal Production, Atabey Vocational School, Isparta Applied Sciences University, 32200, Isparta, Turkey
| | - Emine Yalçın
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
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Durhan B, Yalçın E, Çavuşoğlu K, Acar A. Molecular docking assisted biological functions and phytochemical screening of Amaranthus lividus L. extract. Sci Rep 2022; 12:4308. [PMID: 35279686 PMCID: PMC8918320 DOI: 10.1038/s41598-022-08421-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 02/24/2022] [Indexed: 12/29/2022] Open
Abstract
In this study, the phytochemical content of Amaranthus lividus extract and its multi-biological activities were investigated. Total protein, phenol, flavonoid, saponin and condensed tannin contents were determined for phytochemical analysis. In addition, GC-MS and HPLC analyzes were carried out for the determination of the active components of the extract. In determining the multi-biological activities, radical scavenging, anti-mutagenic, anti-proliferative and anti-microbial activities of the extract were investigated. GC-MS analysis revealed that the leaf extract of A. lividus contains phytol and β-sitosterol as major compounds and the presence of gallic acid, caffeic acid, quercetin, vanillin and kaemferol compounds were determined with HPLC analysis. The radical scavenging effect of A. lividus extract was determined as 75.6% against 2,2-diphenyl-1-picrylhydrazyl and 85.2% against superoxide. In anti-bacterial studies, it was determined that A.lividus extract formed different inhibition zones against all tested bacteria. The highest inhibition zone was 14.3 ± 0.7 mm against Bacillus subtilis. In addition, the anti-microbial activity of the extract was demonstrated by molecular docking studies of the binding of gallic acid and phytol to aquaporin and arginase enzyme of bacteria, and the mechanism of anti-microbial activity was explained. A. lividus extract, which provided a 68.59-33.13% reduction in the formation of chromosomal aberrations such as unequal distribution of chromatin, micronucleus formation, fragment, sticky chromosome, bridge and vagrant chromosome, exhibited a strong anti-mutagenic effect. A. lividus extract has a reducing effect on the number of dividing cells and exhibits an anti-proliferative effect of 25.7% compared to the control group. The antiproliferative mechanism of action was investigated by molecular docking and it was determined that the gallic acid and phytol in the extract decreased proliferation by interacting with telomerase. As a result, A.lividus extract consumed as food is a potential natural anti-microbial, anti-oxidant, anti-mutagenic and anti-proliferative source with its rich phytochemical content.
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Affiliation(s)
- Burhan Durhan
- Institute of Science, Giresun University, Giresun, Turkey
| | - Emine Yalçın
- Department of Biology, Faculty of Science and Art, Giresun University, 28200, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, 28200, Giresun, Turkey.
| | - Ali Acar
- Department of Medical Services and Techniques, Vocational School of Health Services, Giresun University, Giresun, Turkey
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Kurt D, Acar A, Çavuşoğlu D, Yalçin E, Çavuşoğlu K. Genotoxic effects and molecular docking of 1,4-dioxane: combined protective effects of trans-resveratrol. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:54922-54935. [PMID: 34021451 DOI: 10.1007/s11356-021-14387-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 05/10/2021] [Indexed: 06/12/2023]
Abstract
In this study, the protective effects of trans-resveratrol (t-resv) against 1,4-dioxane-induced toxicity in meristematic cells were investigated. For this purpose, Allium test was used and the alterations in all experimental groups were examined by using physiological, cytogenetic, biochemical, and anatomical parameters. In order to elucidate the toxicity mechanism, interactions of 1,4-dioxane and intracellular antioxidant molecules were investigated by molecular docking. As a result of the analysis, it was determined that 1,4-dioxane causes serious abnormalities in Allium cepa meristematic cells. In 1,4-dioxane-treated group, germination percentage was regressed 1.6 times, root length was reduced 12.7 times, and weight gain was decreased 7.7 times compared to control group. T-resv administration with 1,4-dioxane resulted in an improvement in physiological parameters and reduced the relative injury rate from 0.4 to 0.16. Mitotic index (MI), micronucleus (MN), and chromosomal abnormality (CAs) frequencies were investigated as cytogenetic parameters. 1,4-Dioxane decreased MI index, and increased CAs and MN frequency. In addition, it was determined by the comet test that 1,4-dioxane caused deterioration in DNA integrity. T-resv treatment was found to cause a dose-dependent improvement in genotoxic effects. Changes in the antioxidant system in all experimental groups were determined by measuring malondialdehyde (MDA) and glutathione (GSH) levels, superoxide dismutase (SOD), and catalase (CAT) enzyme activities. 1,4-Dioxane caused alterations in all tested parameters, causing deterioration in the oxidant/antioxidant balance in the cell. A 200-mg/L t-resv+1,4-dioxane treatment caused a 1.9-fold decrease in MDA level which is indicator of lipid peroxidation compared to only 1,4-dioxane-treated group. The mechanism of the disruption in antioxidant/oxidant dynamics and genetic integrity was elucidated by molecular docking analysis of 1,4-dioxane with antioxidant molecules and DNA. In 1,4-dioxane treatment group, anatomical changes such as cell deformation, flattened cell nucleus, and thickening of cortex cell wall were observed. The frequency of these changes decreased with t-resv administration. As a result, it was determined that 1,4-dioxane caused a versatile toxicity in A. cepa meristematic cells, while t-resv was found to have a dose-dependent protective feature against 1,4-dioxane-induced toxicity.
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Affiliation(s)
- Deniz Kurt
- Vocational School of Alucra Turan Bulutçu, Laborant and Veterinary Health Program, Giresun University, Giresun, Turkey
| | - Ali Acar
- Vocational School of Health Services, Department of Medical Services and Techniques, Giresun University, Giresun, Turkey
| | - Dilek Çavuşoğlu
- Atabey Vocational School, Department of Plant and Animal Production, Isparta University of Applied Sciences, Isparta, Turkey.
| | - Emine Yalçin
- Faculty of Science and Art, Department of Biology, Giresun University, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Faculty of Science and Art, Department of Biology, Giresun University, Giresun, Turkey
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11
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Kalefetoğlu Macar T, Macar O, Yalçın E, Çavuşoğlu K. Protective roles of grape seed (Vitis vinifera L.) extract against cobalt(II) nitrate stress in Allium cepa L. root tip cells. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:270-279. [PMID: 32809124 DOI: 10.1007/s11356-020-10532-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 08/13/2020] [Indexed: 06/11/2023]
Abstract
Excessive doses of toxic metals such as cobalt may cause detrimental hazards to exposed organisms. Six groups of onion bulbs were formed to investigate the therapeutic effects of grape seed extract (GSE) against cobalt(II) nitrate (Co(NO3)2) exposure in Allium cepa L. root tips. Control group was irrigated with tap water, while the latter groups were exposed to 150 mg/L GSE, 300 mg/L GSE, 5.5 ppm Co(NO3)2, 5.5 ppm Co(NO3)2 + 150 mg/L GSE and 5.5 ppm Co(NO3)2 + 300 mg/L GSE, respectively. Co(NO3)2 treatment seriously inhibited the root growth, germination and weight gain of the bulbs. Mitotic index was significantly decreased, whereas the chromosomal aberrations and micronuclei incidence exhibited a remarkable increase. In addition, Co(NO3)2 induced a variety of anatomical disorders in onion roots. Lipid peroxidation levels of the cellular membranes were assessed measuring the malondialdehyde content (MDA). MDA amount in Co(NO3)2-treated group reached the highest level among all groups. Co(NO3)2 treatment enhanced the activity of superoxide dismutase and catalase. The addition of GSE to Co(NO3)2 solution substantially suppressed the negative effects of Co(NO3)2 in a dose-dependent manner by strengthening the antioxidant defence system and reducing the cytotoxicity. Moreover, there was a significant recovery in growth parameters following the grape seed addition to Co(NO3)2. GSE had a remarkable reduction in genotoxicity when treated as a mixture with Co(NO3)2. Overall data obtained from this investigation proved that GSE, as a promising functional by-product, had a protective effect on Allium cepa L. against the toxic effects of Co(NO3)2.
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Affiliation(s)
- Tuğçe Kalefetoğlu Macar
- Şebinkarahisar School of Applied Sciences, Department of Food Technology, Giresun University, 28400, Giresun, Turkey
| | - Oksal Macar
- Şebinkarahisar School of Applied Sciences, Department of Food Technology, Giresun University, 28400, Giresun, Turkey.
| | - Emine Yalçın
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
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12
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Öztürk G, Çavuşoğlu K, Yalçın E. Dose-response analysis of potassium bromate-induced toxicity in Allium cepa L. meristematic cells. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:43312-43321. [PMID: 32737776 DOI: 10.1007/s11356-020-10294-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 07/27/2020] [Indexed: 06/11/2023]
Abstract
In this study, the toxic effects of potassium bromate (KBrO3) were tested on Allium cepa L. meristematic cells. In order to determine the toxic effect and dose relationship, KBrO3 toxicity was investigated at doses of 25, 50, and 100 mg/L. The toxic effects were evaluated by using cytogenetic, biochemical, anatomical, and physiological parameters, and serious damages were observed depending on the dose. Significant reductions in germination percentage, weight gain, and radicle length were observed in all KBrO3-treated groups compared with the control. Mitotic activity decreased in meristematic cells after KBrO3 application. and mitotic index was decreased by 1.8 times in 100 mg/L KBrO3-treated group compared with the control group. The frequencies of micronucleus and chromosomal abnormalities tested as cytogenetic parameters were significantly higher in the group treated with 100 mg/L KBrO3 than those in the control group. Fragment and sticky chromosome were the most common types of chromosomal abnormalities. Lipid peroxidation measured in terms of MDA content increased with increasing doses of KBrO3. The activities of catalase and superoxide dismutase as antioxidant enzymes were importantly changed in KBrO3-treated groups. Anatomical changes such as cell deformation, substance accumulation, cell wall thickening, and flattened nucleus were determined after KBrO3 application, and it was observed that these changes reached a maximum level at 100 mg/L dose of KBrO3. As a result, KBrO3 treatments were been found to cause physiological, biochemical, cytogenetic, and anatomically toxic effects in meristematic cells of A. cepa, a eukaryotic model organism. The versatile toxicity induced by KBrO3 increased depending on the dose and reached a maximum level at 100 mg/L.
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Affiliation(s)
- Gökçe Öztürk
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey.
| | - Emine Yalçın
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey
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Çavuşoğlu K, Kurt D, Yalçın E. A versatile model for investigating the protective effects of Ceratonia siliqua pod extract against 1,4-dioxane toxicity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:27885-27892. [PMID: 32405939 DOI: 10.1007/s11356-020-08545-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 03/23/2020] [Indexed: 06/11/2023]
Abstract
In this study, the toxic effects of 1,4-dioxane, a common contaminant, and the protective property of Ceratonia siliqua L. pod extract (Cspe) against this toxicity are aimed to be demonstrated with a versatile model. For this purpose, Allium toxicity test was used and six different experimental groups were formed. While the control group was germinated in tap water, the application groups were germinated in mediums containing 750 mg/L Cspe, 1500 mg/L Cspe, 100 mg/L 1,4-dioxane, 750 mg/L Cspe+100 mg/L 1,4-dioxane, and 1500 mg/L Cspe+100 mg/L 1,4-dioxane. Each group was germinated in related solution for 72 h and alterations in physiological, biochemical, genetic, and anatomical parameters were investigated. Germination percentage, relative injury rate, root length, and weight gain parameters were examined as physiological parameters, and no significant difference was observed in the control group and only-Cspe-treated groups. In groups treated with 100 mg/L 1,4-dioxane, germination percentage, root length, and weight gain were significantly decreased, and the relative injury rate reached the highest value as 0.48. It was determined that all physiological parameters improved in the groups where Cspe and 1,4-dioxane treated together, and the relative injury rate decreased to 0.22 in the group treated with 1500 mg/L Cspe+1,4-dioxane. Genotoxic effects were tested by the micronucleus and chromosomal abnormality frequency, and statistically insignificant micronucleus formation was found in control group and Cspe-treated groups. Micronucleus frequency were found to be 58.00 ± 12.12 and 31.00 ± 07.38 in 1,4-dioxane and 1500 mg/L Cspe+1,4-dioxane-treated groups, respectively. This result showed that the application of 1500 mg/L Cspe had a 46.5% reduction in the frequency of 1,4-dioxane-induced micronucleus and had a protective effect on genomic integrity. It has been found that 1,4-dioxane application induces lipid peroxidation and increases malondialdehyde level 4.5 times compared with control group. Oxidative stress, which was proved by increased malondialdehyde levels in 1,4-dioxane-treated group caused induction of superoxide dismutase and catalase enzymes, and it was determined that enzyme activities increased by 1.99 and 4.9 times, respectively, compared with the control group. Cspe treatment with 1,4-dioxane caused a significant decrease in malondialdehyde level, superoxide dismutase, and catalase enzyme activities, indicating that oxidative stress formation in the cells was repressed. Abnormalities such as cell deformation, cell wall thickening, and flattened cell nuclei were seen in 1,4-dioxane-treated group in the cross sections of root tips, and the frequency of these abnormalities decreased with Cspe application. As a result, it was determined that 1,4-dioxane caused a versatile toxicity in the test material Allium cepa, whereas Cspe application had a dose-dependent protective feature against toxicity in all tested parameters.
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Affiliation(s)
- Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
| | - Deniz Kurt
- Vocational School of Alucra Turan Bulutçu, Laborant and Veterinary Health Program, Giresun University, Giresun, Turkey.
| | - Emine Yalçın
- Department of Biology, Faculty of Science and Art, Giresun University, Giresun, Turkey
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14
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Demirtaş G, Çavuşoğlu K, Yalçin E. Aneugenic, clastogenic, and multi-toxic effects of diethyl phthalate exposure. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:5503-5510. [PMID: 31853848 DOI: 10.1007/s11356-019-07339-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 12/09/2019] [Indexed: 06/10/2023]
Abstract
Diethyl phthalate (DEP) is a compound which is used in many industrial fields, especially in cosmetic sector and causes contamination in air, water, and soil due to its widespread usage. In this study, the potential toxic effects of DEP were investigated by using physiological, anatomical, biochemical, and cytogenetic parameters in Allium cepa. The micronucleus (MN) test specifically aimed to elucidate the aneugenic and clastogenic effects of DEP. Physiological effects were determined by germination percentage, root length, weight gain parameters, and cytogenetic effects were investigated by mitotic index (MI) and chromosomal abnormality (CA) test. Malondialdehyde (MDA) level, catalase (CAT), and superoxide dismutase (SOD) activities were investigated as oxidative damage indicators and structural changes were investigated with anatomical cross sections. For this purpose, Allium cepa bulbs were divided into four groups as control and application groups and the application groups were germinated with 1.0, 2.2, and 4.4 μM DEP for 72 h. As a result, it was determined that germination percentage, weight gain and root length decreased, CA frequency, MDA level, SOD, and CAT activities were increased in DEP-treated groups when compared with the control group. DEP has been found to induce CA in root tip cells such as fragment, chromosome bridge, c-mitosis, sticky chromosome, and unequal chromatin distribution. When MN formations induced by DEP application were examined, both large-scale and small-scale MNs were determined. MN formation in both sizes indicates that DEP has both clastogenic and aneugenic effects. And also, it was found that DEP application caused structural changes and especially anatomic damages such as necrosis in 4.4 μM DEP application. As a result, it was found that DEP caused various toxic effects depending on the dose and that A. cepa test material was a useful indicator in determining these effects.
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Affiliation(s)
- Güray Demirtaş
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey
| | - Emine Yalçin
- Department of Biology, Faculty of Science and Art, University of Giresun, Giresun, Turkey.
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15
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Macar TK, Macar O, Yalçın E, Çavuşoğlu K. Resveratrol ameliorates the physiological, biochemical, cytogenetic, and anatomical toxicities induced by copper(II) chloride exposure in Allium cepa L. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:657-667. [PMID: 31808086 DOI: 10.1007/s11356-019-06920-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 10/31/2019] [Indexed: 04/16/2023]
Abstract
Excessive copper (Cu) exposure ultimately results in toxicosis in all organisms. The protective potential of resveratrol compound against the CuCl2 toxicity was evaluated in Allium cepa L. root tip cells. For this aim, A. cepa bulbs were divided into six groups and the groups were treated with tap water, 400 mg/L resveratrol, 800 mg/L resveratrol, 20 μM CuCl2, 400 mg/L resveratrol + 20 μM CuCl2, and 800 mg/L resveratrol + 20 μM CuCl2 solutions, respectively for 72 h. The first group irrigated with tap water was accepted as control. All groups were screened for the germination percentage, root elongation, total bulb weight gain, micronucleus (MN) frequency, mitotic index (MI), chromosomal aberrations, and anatomical changes. Furthermore, superoxide dismutase (SOD) and catalase (CAT) activities as well as malondialdehyde (MDA) level as an indicator of lipid peroxidation were investigated. It was found that CuCl2 exposure alone triggered a definite negative effects on all parameters examined. On the other hand, the groups treated with resveratrol did not have statistically different values compared to the control group. Resveratrol doses induced a remarkable recovery in growth parameters including germination percentage, root elongation, and total bulb weight gain when applied with CuCl2. In these groups, MN frequency, chromosomal aberrations, and anatomical abnormalities were alleviated, whereas the MI levels increased significantly. Moreover, lipid peroxidation level and antioxidant enzyme activities showed a marked amelioration when resveratrol and CuCl2 were applied together. Copper compounds have become common pollutants due to their direct uses as pesticides in agricultural areas as well as their spreading to natural areas from industrial fields. The study clearly demonstrated the therapeutic potential of resveratrol against the harmful effects of CuCl2 exposure in Allium roots. So, resveratrol could be considered as a plant-derived restorative agent for the reduction of the risks from the other copper compounds.
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Affiliation(s)
- Tuğçe Kalefetoğlu Macar
- Şebinkarahisar School of Applied Sciences, Department of Food Technology, Giresun University, 28400, Giresun, Turkey.
| | - Oksal Macar
- Şebinkarahisar School of Applied Sciences, Department of Food Technology, Giresun University, 28400, Giresun, Turkey
| | - Emine Yalçın
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Faculty of Science and Art, Department of Biology, Giresun University, 28049, Giresun, Turkey
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Macar O, Kalefetoğlu Macar T, Çavuşoğlu K, Yalçın E. Protective effects of anthocyanin-rich bilberry (Vaccinium myrtillus L.) extract against copper(II) chloride toxicity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:1428-1435. [PMID: 31745808 DOI: 10.1007/s11356-019-06781-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 10/15/2019] [Indexed: 06/10/2023]
Abstract
In this study, the protective effects of 50 mg/L and 100 mg/L doses of anthocyanin-rich bilberry extracts (ABE) against the toxicity caused by 20 μM copper(II) chloride (CuCl2) on Allium cepa L. were investigated. Alterations in weight gain, germination percentage, and root elongation were evaluated as physiological parameters while micronucleus (MN), mitotic index (MI), and chromosomal abnormality (CA) frequency were studied as cytogenetic parameters. Oxidative stress indicators such as malondialdehyde (MDA) formation, superoxide dismutase (SOD) activity, and catalase (CAT) activity were analyzed and also damages in root tip meristem cells were determined by cross sections. As a result, it was found that the percentage of germination, weight gain, root length, and MI decreased and the frequency of MN and CAs increased with CuCl2 treatment. CuCl2 exposure caused a significant increase in SOD and CAT activities and MDA levels. A number of anatomical abnormalities and damages were detected in the cross sections of CuCl2-treated roots. On the other hand, ABE applications ameliorated notably all copper-induced damages in a dose-dependent manner. Therefore, the powerful protective potential of ABE against copper-induced toxicity was proven through an extensive study in a popular plant model.
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Affiliation(s)
- Oksal Macar
- Department of Food Technology, Şebinkarahisar School of Applied Sciences, Giresun University, Giresun, Turkey.
| | - Tuğçe Kalefetoğlu Macar
- Department of Food Technology, Şebinkarahisar School of Applied Sciences, Giresun University, Giresun, Turkey
| | - Kültiğin Çavuşoğlu
- Department of Biology, Faculty of Science and Arts, Giresun University, Giresun, Turkey
| | - Emine Yalçın
- Department of Biology, Faculty of Science and Arts, Giresun University, Giresun, Turkey
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