Scrutiny of Metal Ion Binding Sites in Different Alginate Lyases through In Silico Analysis

Integrated insulin-iron nanoparticles: a multi-modal approach for receptor-specific bioimaging, reactive oxygen species scavenging, and wound healing

Metallic nanoparticles have emerged as a promising option for various biological applications, owing to their distinct characteristics such as small size, optical properties, and ability to exhibit luminescence. In this study, we have successfully employed a one-pot method to synthesize multifunctional insulin-protected iron [Fe(II)] nanoparticles denoted as [IFe(II)NPs]. The formation of IFe(II)NPs is confirmed by the presence of FTIR bonds at 447.47 and 798.28 cm-1, corresponding to Fe-O and Fe-N bonds, respectively. Detailed analysis of the HR-TEM-EDS-SAED data reveals that the particles are spherical in shape, partially amorphous in nature, and have a diameter of 28.6 ± 5.2 nm. Additionally, Metal Ion Binding (MIB) and Protein Data Bank (PDB) analyses affirm the binding of iron ions to the insulin hexamer. Our findings underscore the potential of IFe(II)NPs as a promising new platform for a variety of biomedical applications due to their high signal-to-noise ratio, and minimal background fluorescence. The particles are highly luminescent, biocompatible, and have a significant quantum yield (0.632). Exemplar applications covered in this paper include insulin receptor recognition and protection against reactive oxygen species (ROS), harmful molecules known to inflict damage on cells and DNA. The IFe(II)NPs effectively mitigate ROS-induced inflammation, which is a hinderance to wound recovery, thereby facilitating enhanced wound recovery.

Characterization and Mechanism Study of a Novel PL7 Family Exolytic Alginate Lyase from Marine Bacteria Vibrio sp. W13

Alginate lyase can degrade alginate into oligosaccharides through β-elimination for various biological, biorefinery, and agricultural purposes. Here, we report a novel PL7 family exolytic alginate lyase VwAlg7A from marine bacteria Vibrio sp. W13 and achieve the heterologous expression in E. coli BL21 (DE3). VwAlg7A is 348aa with a calculated molecular weight of 36 kDa, containing an alginate lyase 2 domain. VwAlg7A exhibits specificity towards poly-guluronate. The optimal temperature and pH of VwAlg7A are 30 °C and 7.0, respectively. The activity of VwAlg7A can be significantly inhibited by the Ni2+, Zn2+, and NaCl. The Km and Vmax of VwAlg7A are 36.9 mg/ml and 395.6 μM/min, respectively. The ESI and HPAEC-PAD results indicate that VwAlg7A cleaves the sugar bond in an exolytic mode. Based on the molecular docking and mutagenesis results, we further confirmed that R98, H169, and Y303 are important catalytic residues.

Evaluation and analysis of the toxicity of mercury (Hg2+) to allophycocyanin from Spirulina platensis in vitro

As a global environmental pollution problem, heavy metal pollution has brought great harm to human beings. In this work, we studied the toxicity of Hg²⁺ on allophycocyanin (APC) at the molecular level. Firstly, APC was extracted and purified from Spirulina platensis mud and its purity (A₆₅₀/A₂₈₀) reached 3.75. In addition, the fluorescence intensity of APC decreased with increasing Hg²⁺ concentration from 0 to 5 × 10^-6 mol L^-1. The theoretical calculation and experimental results showed that the fluorescence quenching of APC by Hg²⁺ was static and had a good linear relationship. Moreover, the UV-Vis spectra of APC showed a significant decrease at 200 nm and 650 nm with the increase of Hg²⁺ concentration from 0 to 5×10^-6 mol L^-1, and a red-shift at 200 nm, which indicated that Hg²⁺ not only affected the structure of APC but also affected the light absorption and photosynthetic function of APC. Furthermore, the results of molecular simulation demonstrate that Hg²⁺ combinations with the Met77, Cys81 in the α chain and the Arg77, Cys81 in the β chain, which interact between the peptide chain and the chromophore, and Hg²⁺ forms a Hg-S bond with -SH. This study provides new insights into the structure and how Hg²⁺ effect the optical properties of APC.