1
|
Yartasi E, Durmaz R, Ari O, Mumcuoglu I, Dinc B. Molecular characterization of the multi-drug resistant Myroides odoratimimus isolates: a whole genome sequence-based study to confirm carbapenem resistance. Int Microbiol 2023:10.1007/s10123-023-00472-9. [PMID: 38127105 DOI: 10.1007/s10123-023-00472-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 12/08/2023] [Accepted: 12/15/2023] [Indexed: 12/23/2023]
Abstract
The bacteria belonging to the Myroides genus are opportunistic pathogens causing community or hospital-acquired infections that result in treatment failure due to antibiotic resistance. This study aimed to investigate molecular mechanisms of antibiotic resistance, clonal relatedness, and the biofilm forming capacity of the 51 multi-drug resistant Myroides odoratimimus. All isolates were screened for blaKPC, blaOXA, blaVIM, blaIMP, blaMUS, blaTUS, blaNDM, and blaB genes by using PCR amplification. Whole genome sequencing (WGS) was applied on three randomly selected isolates for further investigation of antibiotic resistance mechanisms. Clonal relatedness was analyzed by Pulsed-field gel electrophoresis (PFGE) and the microtiter plate method was used to demonstrate biofilm formation. All isolates were positive for biofilm formation. PCR analysis resulted in a positive for only the blaMUS-1 gene. WGS identified blaMUS-1, erm(F), ere(D), tet(X), and sul2 genes in all strains tested. Moreover, the genomic analyses of three strains revealed that genomes contained a large number of virulence factors (VFs). PFGE yielded a clustering rate of 96%. High clonal relatedness, biofilm formation, and multi-drug resistance properties may lead to the predominance of these opportunistic pathogens in hospital environments and make them cause nosocomial infections.
Collapse
Affiliation(s)
- Esra Yartasi
- Department of Clinical Microbiology, Ankara Bilkent City Hospital, University of Health Sciences, Ankara, Turkey
| | - Rıza Durmaz
- Department of Clinical Microbiology, Faculty of Medicine, Ankara Yildirim Beyazit University, Ankara, Turkey.
| | - Oguz Ari
- Central Research and Application Center, Ankara Yildirim Beyazit University, Ankara, Turkey
| | - Ipek Mumcuoglu
- Department of Clinical Microbiology, Ankara Bilkent City Hospital, University of Health Sciences, Ankara, Turkey
| | - Bedia Dinc
- Department of Clinical Microbiology, Ankara Bilkent City Hospital, University of Health Sciences, Ankara, Turkey
| |
Collapse
|
2
|
Aygar IS, Aydogan CN, Ozcan H, Unat I, Fatsa T, Tekin K, Yalci A, Hosbul T, Sahiner F, Gumral R. Myroides odoratimimus: a New Threat with Persistent Infections, Multidrug Resistance, and the Potential for Hospital Outbreaks. Jpn J Infect Dis 2023; 76:335-342. [PMID: 37394461 DOI: 10.7883/yoken.jjid.2023.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Myroides species have recently been reported more frequently in outbreaks in clinics and intensive care units (ICUs). In this study, we aimed to investigate the epidemic potential, antibiotic resistance profile, and risk factors of M. odoratimimus isolates that are increasingly being isolated from the ICUs of our hospital. Data from patients whose Myroides spp. were isolated from their clinical specimens over a 5-year period (September 2016 to January 2022) were retrospectively analyzed. Bacterial identification was performed using a matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). The presence of antibiotic resistance genes was analyzed using polymerase chain reaction (PCR). Possible clonal associations between isolates were investigated using enterobacterial repetitive intergenic consensus (ERIC)-PCR. As a result, 66 isolates were identified as M. odoratimimus and one isolate was identified as M. odoratus. The blaMUS resistance gene was detected in all M. odoratimimus isolates, whereas sul2 was detected in ten isolates and tetX was detected in 11 isolates. No other resistance genes, such as blaTUS, were detected. Additionally, two different clonal association patterns were discovered in the 24 selected isolates through the ERIC-PCR method. The increase in the immunosuppressive patient population indicate the possibility of encountering this agent and other opportunistic pathogens more frequently in the future.
Collapse
Affiliation(s)
- Ismail Selcuk Aygar
- Medical Microbiology Laboratory, Gülhane Training and Research Hospital, University of Health Sciences, TÜRKİYE
| | - Canset Nur Aydogan
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Hande Ozcan
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Irem Unat
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Tugba Fatsa
- Molecular Laboratory, Gülhane Health Institute, University of Health Sciences, TÜRKİYE
| | - Kemal Tekin
- Medical Microbiology Laboratory, Gülhane Training and Research Hospital, University of Health Sciences, TÜRKİYE
| | - Aysun Yalci
- Department of Infectious Diseases and Clinical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Tugrul Hosbul
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Fatih Sahiner
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| | - Ramazan Gumral
- Department of Medical Microbiology, Gülhane Faculty of Medicine, University of Health Sciences, TÜRKİYE
| |
Collapse
|
3
|
Do S, Rebentish A, Ravichandran Kumar P. Case Report of Myroides odoratimimus Cellulitis in Chronic Venous Stasis Dermatitis With Literature Review. Cureus 2023; 15:e45319. [PMID: 37846255 PMCID: PMC10577044 DOI: 10.7759/cureus.45319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/14/2023] [Indexed: 10/18/2023] Open
Abstract
Myroides spp.-induced cutaneous infections are rare, with only 17 reported cases in the literature. Myroides spp. behave like low-grade opportunistic pathogens, with symptomatic infections observed typically in severely immunocompromised patients and seldom in immunocompetent patients. In this paper, we present an immunocompetent 61-year old male with a past medical history of hypertension, hyperlipidemia, morbid obesity, and patient-reported peripheral neuropathy who presented to the transitional care clinic with bilateral lower extremity swelling and hemosiderin-pigmented dry wounds consistent with diagnosis of chronic venous stasis dermatitis with resolved secondary Myroides odoratimimus infection. Further literature review about Myroides spp. and its resistance mechanism, antibiotic susceptibility, and biofilm production are also included in this paper.
Collapse
Affiliation(s)
- Stephen Do
- Medicine, Touro University Nevada, Henderson, USA
| | | | | |
Collapse
|
4
|
Zhang L, Guo H, Gu J, Hu T, Wang X, Sun Y, Li H, Sun W, Qian X, Song Z, Xie J, An L. Metagenomic insights into dietary remodeling of gut microbiota and antibiotic resistome in meat rabbits. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 874:162006. [PMID: 36791852 DOI: 10.1016/j.scitotenv.2023.162006] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 01/28/2023] [Accepted: 01/30/2023] [Indexed: 06/18/2023]
Abstract
The gut microbiota is a repository of antibiotic resistance genes (ARGs), which may affect the health of humans and animals. The intestinal flora is affected by many factors but it is unclear how the intestinal microflora and antibiotic resistome in rabbits might change under dietary intervention. Feeding with lettuce led to the amplification and transfer of exogenous ARGs in the intestinal flora, but there were no significant differences when fed lettuces grown with different manure types. For example, the lsaC of lettuce fed with bovine, chicken and pig manure without adding organic fertilizer increased by 0.143, 0.151, 0.179 and 0.169 logs respectively after 4 weeks, and the efrB also increased by 0.074, 0.068, 0.079 and 0.106 logs respectively. Network analysis showed that Clostridium_ sensu_ stricto_ 18 was a potential host of type 6 virulence factor genes (VFGs). Mantel analysis showed that ARGs were directly influenced by mobile genetic elements (MGEs) and VFGs. Thus, feeding rabbits lettuce grown with different manure types contribute to the transmission of ARGs by remodeling the intestinal microenvironment. In addition, diet may affect exogenous ARGs to change the intestinal antibiotic resistome and possibly threaten health.
Collapse
Affiliation(s)
- Li Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Honghong Guo
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Jie Gu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Northwest A&F University, Yangling, Shaanxi 712100, China.
| | - Ting Hu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiaojuan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yifan Sun
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Huakang Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Wei Sun
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xun Qian
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Zilin Song
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jun Xie
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lu An
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| |
Collapse
|
5
|
Oyardi O, Eltimur T, Demir ES, Alkan B, Savage PB, Akcali A, Bozkurt-Guzel C. Antibacterial and Antibiofilm Activities of Ceragenins Alone and in Combination with Levofloxacin Against Multidrug Resistant Myroides spp. Clinical Isolates from Patients with Urinary Tract Infections. Curr Microbiol 2023; 80:210. [PMID: 37191731 DOI: 10.1007/s00284-023-03321-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 05/02/2023] [Indexed: 05/17/2023]
Abstract
Myroides spp. are rare opportunistic pathogens, but they can be life-threatening because of their multidrug-resistant drug properties and their potential to cause outbreaks, especially in immunosuppressed patients. In this study, 33 isolates isolated from intensive care patients with urinary tract infections were examined for drug susceptibility. All isolates except three proved to be resistant to the tested conventional antibiotics. The effects of ceragenins, a class of compounds developed to mimic endogenous antimicrobial peptides, were evaluated against these organisms. The MIC values of nine ceragenins were determined, and the most effective ceragenins were CSA-131 and CSA-138. Three isolates that were susceptible to levofloxacin and two isolates resistant to all antibiotics underwent 16 s rDNA analysis, and whereas resistant isolates were identified as M. odoratus, susceptible isolates were identified as M. odoratimimus. CSA-131 and CSA-138 showed rapid antimicrobial effects observed in time-kill analyses. Combinations of ceragenins and levofloxacin caused a significant increase in antimicrobial and antibiofilm activities against M. odoratimimus isolates. In this study, Myroides spp. were found to be multidrug-resistant and have biofilm forming capacity, and ceragenins CSA-131 and CSA-138 were found to be especially effective on both planktonic and biofilm forms of Myroides spp.
Collapse
Affiliation(s)
- Ozlem Oyardi
- Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Gazi University, 06330, Ankara, Turkey.
| | - Tuba Eltimur
- Department of Medical Microbiology, Faculty of Medicine, Canakkale Onsekiz Mart University, Terzioglu Campus, 17100, Canakkale, Turkey
| | - Elif Sena Demir
- Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Istanbul University, 34116, Istanbul, Turkey
| | - Busra Alkan
- Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Istanbul University, 34116, Istanbul, Turkey
| | - Paul B Savage
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, 84602, USA
| | - Alper Akcali
- Department of Medical Microbiology, Faculty of Medicine, Canakkale Onsekiz Mart University, Terzioglu Campus, 17100, Canakkale, Turkey
| | - Cagla Bozkurt-Guzel
- Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Istanbul University, 34116, Istanbul, Turkey
| |
Collapse
|
6
|
Khan U, Pandey E, Gandham N, Das N, Mukhida S, Kannuri S, Bhaumik S, Mirza S. A case series and literature review of infections due to Myroides spp.: identification of contributing factors and emerging antibiotic susceptibility trends. Access Microbiol 2023; 5:acmi000549.v2. [PMID: 37323940 PMCID: PMC10267660 DOI: 10.1099/acmi.0.000549.v2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 03/09/2023] [Indexed: 06/17/2023] Open
Abstract
Introduction Infections forby Myroides spp. can lead to significant morbidity and mortality, particularly in immunocompromised patients with underlying co-morbidities. Recent reports have highlighted its intrinsic and acquired drug resistance, making it a particularly challenging infectious agent to combat. Methods Myroides spp. isolated and reported in clinically significant urine samples were considered for the study. Identification of the organism was done via the VITEK 2C system. Antibiotic susceptibility testing was done using both manual and automated methods following Clinical and Laboratory Standards Institute (CLSI) guidelines. Existing literature was searched on MEDLINE using PubMed. Results We present a series of five catheter-associated urinary tract infections due to Myroides odoratimimus , with sensitivity to only minocycline. This is the first case from Western India, and the third case in the existing literature that shows Myroides sensitivity only to minocycline. Our literature review is the first to systematically describe contributory factors to infection, allowing us to devise a clinically relevant tool that delineates contributory factors and efficacious drugs in Myroides spp. infection. Conclusion Myroides spp. infections, previously considered rare and opportunistic, need cognizance and diagnostic suspicion especially in particular associated conditions.
Collapse
Affiliation(s)
- Uzair Khan
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Ellora Pandey
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Nageswari Gandham
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Nikunja Das
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Sahjid Mukhida
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Sriram Kannuri
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Shalini Bhaumik
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| | - Shahzad Mirza
- Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. Patil Vidyapeeth, Pune, India
| |
Collapse
|
7
|
Gülmez A, Ceylan AN, Özalp O. An Increasing Threat in Intensive Care Units, Evaluation of Multi-Drug-Resistant Myroides spp. Infections and Risk Factors. J Hosp Infect 2023:S0195-6701(23)00123-8. [PMID: 37094716 DOI: 10.1016/j.jhin.2023.04.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/24/2023] [Accepted: 04/12/2023] [Indexed: 04/26/2023]
Abstract
BACKGROUND Myroides species are gram-negative bacilli that are commonly found in soil and water, acting as low-level opportunistic pathogens and causing a variety of infections. AIM The purpose of this study is to assess the risk factors for multidrug-resistant Myroides infections, their association with comorbid illnesses, patient care, and their susceptibility to antibiotics. METHODS This retrospective analytical study was conducted in Istanbul Başakşehir Çam and Sakura City Hospital by including patients with Myroides spp isolation in their culture samples. The total hospitalization days, first isolation days, and 30-day mortality values of the patients were analysed statistically, and the significance level was accepted as p < 0.05. RESULTS Myroides spp. were isolated from 228 patients' 437 culture samples. Of these cases, 210 (92.1%) were classified as having asymptomatic bacteriuria, and 18 (7.9%) as having an infection caused by Myroides spp. 174 (76.3%) of these patients were followed up in the intensive care unit, and the total hospitalization days (median = 24.50) and the first isolation day (median = 9.50) of infected patients were shorter than colonized patients (p = 0.023, p = 0.030), no difference was found between 30-day mortality (p = 0.312). CONCLUSIONS It was observed that Myroides infections could be seen more frequently in patients who were hospitalized for a long time, used broad-spectrum antimicrobials, had invasive procedures, and had co-factors such as diabetes and cerebrovascular disease. In addition, it was observed that the resistance rates of M. odoratus strains were higher than M. odoratimimus strains and the use of quinolone antimicrobials in the treatment of patients with M. odoratimimus infection provided more cure.
Collapse
Affiliation(s)
- Abdurrahman Gülmez
- Istanbul Basaksehir Cam and Sakura City Hospital, Medical Microbiology Laboratory, Istanbul, Turkey.
| | - Ayse Nur Ceylan
- Istanbul Basaksehir Cam and Sakura City Hospital, Medical Microbiology Laboratory, Istanbul, Turkey.
| | - Onur Özalp
- Istanbul Basaksehir Cam and Sakura City Hospital, Infectious Diseases and Clinical Microbiology, Istanbul, Turkey.
| |
Collapse
|
8
|
Jiang LZ, Shen Y, Liang F, Ye XM, Chen J, Yu YM. Intracranial Myroides odoratimimus Infection After EVD Successfully Treated with Intravenous Plus Intraventricular Tigecycline: A Case Report. Infect Drug Resist 2023; 16:1955-1963. [PMID: 37034395 PMCID: PMC10075215 DOI: 10.2147/idr.s403088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/16/2023] [Indexed: 04/03/2023] Open
Abstract
Intracranial infections are the most serious and common postoperative complications with significant mortality and morbidity. Myroides odoratimimus (M. odoratimimus), a Gram-negative environmental species and an opportunistic microorganism, predominantly infects immunocompromised individuals. Limited clinical experiences and documented multidrug resistance have resulted in a scarcity of data on the treatment of M. odoratimimus infections. As far as we know, this is the first reported case of an intracranial M. odoratimimus infection with external ventricular drains (EVD) that was effectively treated with a combination of intravenous and intraventricular tigecycline in an immunocompetent adult host.
Collapse
Affiliation(s)
- Ling-Zhi Jiang
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
| | - Ye Shen
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
| | - Feng Liang
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
| | - Xiang-Ming Ye
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
- Correspondence: Xiang-Ming Ye, Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China, Tel +86-13750814756, Email
| | - Jing Chen
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
| | - Yan-Mei Yu
- Center for Rehabilitation Medicine, Rehabilitation & Sports Medicine Research Institute of Zhejiang Province, Department of Rehabilitation Medicine, Zhejiang Provincial People’s Hospital, Affiliated People’s Hospital, Hangzhou Medical College, Hangzhou, Zhejiang, People’s Republic of China
| |
Collapse
|
9
|
Saticioglu IB, Ay H, Altun S, Karakaya E, Gunduz ES, Aydogdu D, Yarim D, Erkek N, Duman M. Genomic insight into Myroides oncorhynchi sp. nov., a new member of the Myroides genus, isolated from the internal organ of rainbow trout (Oncorhynchus mykiss). Antonie Van Leeuwenhoek 2023; 116:291-302. [PMID: 36586048 DOI: 10.1007/s10482-022-01804-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 12/24/2022] [Indexed: 01/01/2023]
Abstract
The strain M-43T was isolated from the Oncorhynchus mykiss from a fish farm in Mugla, Turkey. Pairwise 16S rRNA gene sequence analysis was used to identify strain M-43T. The strain was a member of the genus Myroides sharing the highest 16S rRNA gene sequence identity levels of 98.7%, 98.3%, and 98.3% with the type strains of M. profundi D25T, M. odoratimimus subsp. odoratimimus CCUG 39352T and M. odoratimimus subsp. xuanwuensis DSM27251T, respectively. A polyphasic taxonomic approach including whole genome-based analyses was employed to confirm the taxonomic provenance of strain M-43T within the genus Myroides. The overall genome relatedness indices (OGRI) for strain M-43T compared with its most closely related type strains M. odoratimimus subsp. xuanwuensis DSM 27251T, M. profundi D25T, and M. odoratimimus subsp. odoratimimus ATCC BAA-634T, were calculated as 25.3%, 25.1%, and 25% for digital DNA-DNA hybridization (dDDH), 83.3%, 83.6%, and 83.4% for average nucleotide identity (ANI) analyses, respectively. The OGRI values between strain M-43T and its close neighbors confirmed that the strain represents a novel species in the genus Myroides. The DNA G + C content of the strain is 33.7%. The major fatty acids are iso-C15:0 and summed feature 9 (iso-C17:1 ω9c and/or 10-methyl C16:0). The predominant polar lipids are phosphatidylethanolamine, an amino-lipid and five unidentified lipids. The major respiratory quinone is MK-6. Chemotaxonomic and phylogenomic analyses of this isolate confirmed that the strain represents a novel species for which the name Myroides oncorhynchi sp. nov. is proposed, with M-43T as the type strain (JCM 34205T = KCTC 82265T).
Collapse
Affiliation(s)
- Izzet Burcin Saticioglu
- Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey.
- Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059, Bursa, Turkey.
| | - Hilal Ay
- Department of Molecular Biology and Genetics, Faculty of Science, Ondokuz Mayis University, 55139, Samsun, Turkey
| | - Soner Altun
- Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059, Bursa, Turkey
| | - Emre Karakaya
- Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey
| | - Enes Said Gunduz
- Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey
| | - Duygu Aydogdu
- Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey
| | - Dogancan Yarim
- Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey
| | - Neslihan Erkek
- Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey
| | - Muhammed Duman
- Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059, Bursa, Turkey
| |
Collapse
|
10
|
Han Y, Li L, Liu J. Distribution characteristics and potential risks of bacterial aerosol in waste transfer station. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 326:116599. [PMID: 36368203 DOI: 10.1016/j.jenvman.2022.116599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/06/2022] [Accepted: 10/20/2022] [Indexed: 06/16/2023]
Abstract
The waste transfer station (WTS) is an important link in the transfer of municipal solid waste (MSW) between the community and disposal terminals. While WTSs facilitate waste collection in communities, odorous gases and bioaerosols can escape from them, thereby negatively affecting their surroundings. In this study, the concentration, particle size distribution, pathogen population, and health risks of bioaerosols were analyzed at different locations in a transfer station. The results showed that the highest viable bacterial aerosol concentration was 10,353 ± 3701 CFU/m3, which was at 5 m from the disposal site. Fifty-three bacterial species, including pathogens, were detected. Of these, 39 were human pathogenic bacteria directly originating from the WTS. Furthermore, health risk assessments indicated unacceptable levels of non-carcinogenic risk for operational workers caused by bacterial aerosols of the WTS work area. In addition, bacterial aerosols may pose a severe health risk to children within a 15 m area of the WTS. The results of this study provide a scientific basis to control and reduce the risk associated with bioaerosol exposure in solid WTSs.
Collapse
Affiliation(s)
- Yunping Han
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 101408, China.
| | - Lin Li
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 101408, China.
| | - Junxin Liu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 101408, China.
| |
Collapse
|
11
|
Wang Y, Chen Z, Ma J, Wang J, Li L. Migration and transformation of main components during perishable waste bio-drying process. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 319:115720. [PMID: 35853308 DOI: 10.1016/j.jenvman.2022.115720] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 07/05/2022] [Accepted: 07/09/2022] [Indexed: 06/15/2023]
Abstract
Bio-drying can significantly reduce the moisture content of waste. The factors, functional microorganisms, and the transformation of main components were investigated during bio-drying of perishable waste. This study provides a scientific basis for the improvement of the bio-drying process and the necessity for secondary pollutant control. Reaction temperature and microbial biomass were main factors during the bio-drying process. The ideal bio-drying conditions included an initial temperature above 20 °C, intermittent ventilation, and appropriate microbial inoculation. The main microorganisms included Alcaligenes, Aquamicrobium, and Brevundimonas. From each gram of the carbonaceous, nitrogenous, sulfur-containing compounds, and phosphorus-containing substances in the perishable waste, approximately 0.74 g, 0.66 g, 0.40 g, and 0.94 g, respectively, were transferred as gas-phase products; consisting mainly of ammonia and volatile organic compounds: 2-heptanone, dimethyl heptanone, and benzene. In the leachate, the respective amounts of the carbonaceous, nitrogenous, sulfur-containing compounds, and phosphorus-containing substances were 3.20 × 10-3 g, 4.08 × 10-3 g, 0.33 g, and 9.52 × 10-3 g, while those of the residual substances remaining in solid were 0.26 g, 0.33 g, 0.28 g, and 0.05 g.
Collapse
Affiliation(s)
- Ying Wang
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
| | - Zexiang Chen
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, PR China.
| | - Jiawei Ma
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
| | - Jun Wang
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, PR China.
| | - Lin Li
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; National Engineering Laboratory for VOCs Pollution Control Material & Technology, University of Chinese Academy of Sciences, Beijing, 101408, PR China.
| |
Collapse
|
12
|
Assessment of Bacterial Diversity of Industrial Poultry Wastewater by Denaturing Gradient Gel Electrophoresis (DGGE) and the Cultivation Method in Order to Inform Its Reuse in Agriculture. BIOMED RESEARCH INTERNATIONAL 2022; 2022:6065305. [PMID: 36177057 PMCID: PMC9514947 DOI: 10.1155/2022/6065305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 08/07/2022] [Accepted: 08/24/2022] [Indexed: 11/30/2022]
Abstract
Effluents discharged by poultry meat industries are heavily polluted with raw materials, such as fat, blood residues, and proteins. Thus, untreated effluents directly discharged into the environment may constitute a public health threat. This study aims to evaluate the bacterial diversity of three water qualities: industrial poultry wastewater (PWW), tap water (TW), and PWW diluted with TW (50 : 50) (V/V) (TWPWW) by the combination of culture-independent and culture-dependent approaches. The total bacterial DNA was extracted using phenol/chloroform method. The hypervariable 16S rRNA region V3-V5 was amplified by PCR using universal primers. The amplicons were separated by vertical electrophoresis on a polyacrylamide gel of increasing denaturing gradient according to their richness in GC bases. Selected bands were reamplified and sequenced. Pure isolated bacteria from nutrient agar medium were characterized according to their morphological and biochemical characteristics. Genomic DNA from pure strains was extracted by boiling method, and a molecular amplification of the 16S–23S ITS region of the 16S rRNA gene was performed using the universal primers. Selected isolates were identified by sequencing. Results showed a high bacterial load and diversity in PWW in comparison with TW and TWPWW. A collection of 44 strains was obtained, and 25 of them were identified by sequencing. Proteobacteria represented 76% of isolated bacteria Gamma-Proteobacteria was the predominate isolate (68%). Other isolates were Firmicutes (8%), Bacteroidetes (12%), and Actinobacteria (8%). These isolates belong to different genera, namely, Pseudomonas, Acinetobacter, Proteus, Empedobacter, Corynebacterium, Enterobacter, Comamonas, Frondibacter, Leclercia, Staphylococcus, Atlantibacter, Klebsiella, and Microbacterium.
Collapse
|
13
|
Extensively Drug-Resistant Myroides odoratus in Critically Ill Patients: A Case Series and Literature Review. Case Rep Infect Dis 2022; 2022:6422861. [PMID: 35873406 PMCID: PMC9303506 DOI: 10.1155/2022/6422861] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 07/01/2022] [Indexed: 11/18/2022] Open
Abstract
The bacterial genus Myroides, like other members of the Flavobacteriaceae family, consists of aerobic, non-motile, Gram-negative bacilli. Myroides spp. is considered predominantly opportunistic pathogens as, historically, most documented infections have been in immunocompromised individuals. Along with advancements in molecular assay testing, there are growing reports of clinically relevant Myroides spp. infections in immunocompetent individuals. These organisms display broad antimicrobial resistance, and while research into their mechanisms of resistance is progressing, genetic testing has revealed metallo-β-lactamases present in their genome. The sporadic identification of Myroides spp. and ongoing clarification of resistance patterns make empiric treatment difficult. This report documents two cases of extensively drug-resistant Myroides odoratus isolated from critically ill but otherwise immunocompetent patients followed by a review of available literature on Myroides spp. antibiotic sensitivities. Our findings indicate that minocycline and moxifloxacin have the highest documented in vitro activity against Myroides spp.
Collapse
|
14
|
Taşkın Kafa AH, Hasbek M. Synergistic efficacy of meropenem, ciprofloxacin and colistin antibiotics against planktonic and biofilm forms of Myroides odoratimimus bacterial isolates. Indian J Med Microbiol 2022; 40:399-403. [PMID: 35491280 DOI: 10.1016/j.ijmmb.2022.04.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 04/03/2022] [Accepted: 04/13/2022] [Indexed: 11/16/2022]
Abstract
PURPOSE In this study, it was aimed to investigate the combined synergistic efficacy of colistin (CT), meropenem (MEM), and ciprofloxacin (CIP) antibiotics on planktonic and biofilm forms in Myroidesodoratimimus strains isolated from various clinical specimens. METHODS Antibiotic susceptibility was determined by the Kirby-Bauer disk diffusion method. In addition, minimum inhibitory concentrations (MIC) of CIP, MEM, and CT were studied using the standardized broth microdilution method. In vitro synergistic activity of antibiotics against M. odoratimimus planktonic bacteria strains was studied by the Micro Broth Checkerboard method. The microtiter plate (MtP) method was used to determine the effectiveness of antibiotics on M. odoratimimus biofilm formation. RESULTS A zone of inhibition was not observed against other antibiotics used except amikacin and linezolid in all strains. While CT/MEM and CT/CIP combinations have a synergistic effect on all strains, the combination CIP/MEM has an additive effect. According to the biofilm inhibition results, all three antibiotics inhibited biofilm formation. However, the efficacy of MEM (60.3-76.5%) and CIP (60.2-77.8%) was approximately two times higher than that of CT (25.4-34.5%). In addition, the effectiveness of combinations of antibiotics on biofilm formation was examined and the percentage of inhibition was 30.8% when CT was used alone, while the biofilm inhibition rates of CT/MEM and CT/CIP were 92.4% and 91.7%, respectively. MEM/CIP combination was inhibited biofilm formation by 75.7%. CONCLUSIONS This study is the first report showing the efficacy of CT, MEM and CIP antibiotics, which are frequently used in clinical practice, in combination on M. odoratimimus planktonic and biofilm forms. The findings of our study are particularly guiding for combined antibiotic treatment options in immunosuppressed patients admitted to an intensive care unit (ICU). The CT/MEM combination is currently used frequently. In addition, these results are important in terms of supporting in vitro that CT/CIP and MEM/CIP combinations can also be used as a treatment option in M. odoratimimus related infections.
Collapse
Affiliation(s)
- Ayşe Hümeyra Taşkın Kafa
- Sivas Cumhuriyet University, Faculty of Medicine, Department of Medical Microbiology, 58140, Sivas, Turkey.
| | - Mürşit Hasbek
- Sivas Cumhuriyet University, Faculty of Medicine, Department of Medical Microbiology, 58140, Sivas, Turkey.
| |
Collapse
|
15
|
Zhu Y, Ma L, Wei W, Li X, Chang Y, Pan Z, Gao H, Yang R, Bi Y, Ding L. Metagenomics analysis of cultured mucosal bacteria from colorectal cancer and adjacent normal mucosal tissues. J Med Microbiol 2022; 71. [PMID: 35467501 DOI: 10.1099/jmm.0.001523] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Introduction. Colorectal cancer (CRC) is one of the most common cancers worldwide. Multiple risk factors are involved in CRC development, including age, genetics, lifestyle, diet and environment. Of these, the role of the gut microbiota in cancer biology is increasingly recognized.Hypothesis/Gap Statement. Micro-organisms have been widely detected in stool samples, but few mucosal samples have been detected and sequenced in depth.Aim. Analysis of cultured mucosal bacteria from colorectal cancer and adjacent normal mucosal tissues with metagenomics sequencing.Methodology. Twenty-eight paired tumour and non-tumour tissues from 14 patients undergoing surgery for CRC were analysed. We removed the influence of eukaryotic cells via culture. The composition of mucosal microbiota in intestinal mucosa were detected and analysed with metagenomic sequencing.Results. Compared with non-cultured mucosal sample, 80 % bacteria species could be detected after culture. Moreover, after culture, additional 30 % bacteria could be detected, compared with non-cultured samples. Since after culture it was difficult to estimate the original abundance of microbiome, we focused on the identification of the CRC tissue-specific species. There were 298 bacterial species, which could only be cultured and detected in CRC tissues. Myroides odoratimimus and Cellulophaga baltica could be isolated from all the tumour samples of 14 CRC patients, suggesting that these species may be related to tumour occurrence and development. Further functional analysis indicated that bacteria from CRC tissues showed more active functions, including basic metabolism, signal transduction and survival activities.Conclusion. We used a new method based on culture to implement information on prokaryotic taxa, and related functions, which samples were from colorectal tissues. This method is suitable for removing eukaryotic contamination and detecting micro-organisms from other tissues.
Collapse
Affiliation(s)
- Yubing Zhu
- Department of Colorectal Surgery and Department of General Surgery, Beijing Shijitan Hospital, Capital Medical University, Beijing, PR China
| | - Ling Ma
- Department of Colorectal Surgery and Department of General Surgery, Beijing Shijitan Hospital, Capital Medical University, Beijing, PR China
| | - Wenting Wei
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Xiang Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Yuxiao Chang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Zhiyuan Pan
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Hong Gao
- Department of Colorectal Surgery and Department of General Surgery, Beijing Shijitan Hospital, Capital Medical University, Beijing, PR China
| | - Ruifu Yang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Yujing Bi
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, PR China
| | - Lei Ding
- Department of Colorectal Surgery and Department of General Surgery, Beijing Shijitan Hospital, Capital Medical University, Beijing, PR China
| |
Collapse
|
16
|
Qiao JJ, Wang SN, Li JJ, Chen LY, Wang MM, Yi B, Liu QX, Liu YB, Zhang C, Honess P, Gao CQ. Effectiveness of treatment of bedding and feces of laboratory animal with ozone. PLoS One 2022; 17:e0266223. [PMID: 35385528 PMCID: PMC8985978 DOI: 10.1371/journal.pone.0266223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/16/2022] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND The incineration and burying of the soiled bedding of laboratory animals, as well as using detergents to treat their feces, is hazardous to the environment. This highlights the need for an alternative, environmentally friendly solution for the treatment of the waste of laboratory animal facilities. This study aims to evaluate the efficacy of ozone disinfection of the soiled bedding and feces of laboratory animals. METHODS Two grams of soiled beddings were randomly sampled from the cages of mice and rats. These samples were mixed in a beaker with 40ml saline. Ozone was piped into the beaker at a concentration of 500mg/h. Samples were taken from the beaker at time 0min, 30min, 45min and 60min after ozone treatment for microbiological culturing in an incubator for 48h. Colony form unit of each plate (CFU/plate) at each time point were counted, the mean CFU/plate at each time point after ozone treatment were compared with that present at time zero. Feces of rabbits and dogs were treated and pathogens were counted the similar way as that of bedding of the mice and rats; samples being taken at 0min, 15min, 30min, 45min and 60min. RESULTS Pathogens were observed in beddings of both mice and rats as well as in feces of rabbits and dogs. Ozone treatment for 30min killed more than 93% of pathogens in the bedding of the two rodent species and 60min of treatment killed over 99% of pathogens. Treatment of rabbit and dog feces for 30min killed over 96% pathogens present, and 60min's treatment killed nearly all the pathogens. Both Gram positive and Gram negative pathogens were sensitive to ozone treatment. CONCLUSION Ozone treatment of bedding and feces is an effective and environment friendly way to deal with the waste of animal facilities, saving energy and potentially enabling their reuse as fertilizer.
Collapse
Affiliation(s)
- Jiao-Jiao Qiao
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
- Center for the Study of Laboratory Animals, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Shan-Ni Wang
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
- Center for the Study of Laboratory Animals, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Jing-Jing Li
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
- Center for the Study of Laboratory Animals, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Li-Yu Chen
- Department of Microbiology, Xiang-Ya School of Medicine, Central South University, Changsha, China
| | - Mei-Mei Wang
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
- Center for the Study of Laboratory Animals, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Bin Yi
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Qing-Xia Liu
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
| | - Yun-Bo Liu
- Institute of Laboratory Animal Sciences, CAMS & PUMC, Beijing, China
| | - Chen Zhang
- Department of Neurobiology, Beijing Key Laboratory of Neural Regeneration and Repair, School of Basic Medical Sciences, Capital Medical University, Beijing, China
| | - Paul Honess
- School of Veterinary Medicine and Science, University of Nottingham, Nottingham, United Kingdom
| | - Chang-Qing Gao
- Department of Clinical Laboratory, Xiang-Ya Hospital, Central South University, Changsha, China
- Center for the Study of Laboratory Animals, Xiang-Ya Hospital, Central South University, Changsha, China
| |
Collapse
|
17
|
Kurt AF, Mete B, Houssein FM, Tok Y, Kuskucu MA, Yucebag E, Urkmez S, Tabak F, Aygun G. A pan-resistant Myroides odoratimimus catheter-related bacteremia in a COVID-19 patient and review of the literature. Acta Microbiol Immunol Hung 2022. [PMID: 35312630 DOI: 10.1556/030.2022.01702] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 03/04/2022] [Indexed: 11/19/2022]
Abstract
Myroides spp. are opportunistic environmental Gram-negative bacteria. These affect mostly immunocompromised hosts and generally lead to soft tissue, and urinary tract infections. Bacteremia most commonly develop secondary to soft tissue or catheter related infections and may lead rarely to mortality. Myroides spp. are generally suscetible to fluoroquinolones, piperacillin/tazobactam, trimethoprim/sulfamethoxazole, carbapenems or tetracyclines however, pan-resistant isolates and multiple resistance genes have been reported in clinical isolates of Myroides spp. We report a pan-resistant Myroides odoratimimus bacteremia in a patient with severe COVID-19 ending with fatality and in this context a review of reported Myroides bacteremias are also described. In this study, a 64-year old male patient with history of coronary artery bypass was admitted to ICU with severe COVID-19 pneumonia accompanied by pneumomediastinum and pneumopericardium. Continous renal replacement therapy and extracorporeal membraneous-oxygenation were initiated due to acute renal failure and persistent hypercarbia/hypoxia, respectively. Within four weeks of hospitalization various episodes of bacteremia developed and multiple antibiotics were used. On the 5th week of follow-up, acute phase reactants increased and empirical broad spectrum antibiotics were initiated. Blood culture revealed Gram-negative rods. The patient became hypotensive and despite maximum medical care he was lost due to cardiac arrest. M. odoratimimus was identified by MALDI-TOF and the bacterium was pan-resistant. According to Center for Genomic Epidemiology results the strain was identified as M. odoratimimus PR63039 and the genome analysis revealed antibiotic resistance genes associated with resistance to beta-lactams (bla OXA-347, bla MUS-1, bla EBR-1), tetracyclines (tetX), sulfonamides (sul2), macrolides (ereD), (ermF).
Collapse
Affiliation(s)
- Ahmet Furkan Kurt
- 1 Department of Infectious Diseases and Clinical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Bilgul Mete
- 1 Department of Infectious Diseases and Clinical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Fatouma Moustapha Houssein
- 1 Department of Infectious Diseases and Clinical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Yesim Tok
- 2 Department of Medical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Mert Ahmet Kuskucu
- 2 Department of Medical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Ebru Yucebag
- 2 Department of Medical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Seval Urkmez
- 3 Department of Anesthesiology and Reanimation, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Fehmi Tabak
- 1 Department of Infectious Diseases and Clinical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Gokhan Aygun
- 2 Department of Medical Microbiology, Cerrahpasa School of Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
| |
Collapse
|
18
|
Illumina Short-Read Sequencing of the Mitogenomes of Novel Scarites subterraneus Isolates Allows for Taxonomic Refinement of the Genus Scarites Fabricius 1775, within the Carabidae Family. INSECTS 2022; 13:insects13020190. [PMID: 35206763 PMCID: PMC8874491 DOI: 10.3390/insects13020190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 02/04/2022] [Accepted: 02/09/2022] [Indexed: 02/04/2023]
Abstract
Simple Summary Ground beetles (Carabidae) have important ecological functions and serve as food, biological pest control, and models in biological research. Although there are over 40,000 ground beetle species worldwide, only a small fraction of those has genomic information currently available, which limits their classification and understanding of diversity. Since next-generation genome sequencing has become more mainstream, we used Illumina short-read sequencing to obtain complete mitogenomes from two Scarites beetles that we collected ourselves in Nebraska and Arkansas. Scarites are large ground beetles that resemble tropical beetles with a big head and large mandibles, and their role as predator and prey helps maintain sustainability in local ecosystems. This straightforward sequencing and analysis was found to be accurate and sufficient to help classify these isolates to the subspecies level. This is the first report of mitogenomes for Scarites subterraneus and only the second in that genus. This method is easily applicable to more beetle species and can be used to increase our understanding of beetles worldwide. Abstract We sequenced the complete mitogenomes, 18S and 28S rRNA of two new Scarites isolates, collected in Eastern Nebraska and Northern Arkansas (US). Based on molecular sequence data comparison and morphological characteristics, the new isolates were identified as a subspecies of Scarites subterraneus Fabricius 1775, for which we propose the subspecies names ‘nebraskensis’ and ‘arkansensis’. The new 18S and 28S rRNA sequences were found to be 99% and 98% identical to Scarites subterraneus. There are no other Scarites 18S or 28S rRNA sequences in the Genbank database, however, phylogenetic analysis of the Cox1 genes showed S. vicinus Chaudoir, 1843, and S. aterrimus Morawitz, 1863, as the closest relatives. This is the first report of a mitogenome for S. subterraneus, and only the second mitogenome for that genus. The nucleotide sequence identity between the mitogenomes of the two isolates is 98.8%, while the earlier sequenced S. buparius Forster 1771 mitogenome is more distantly related, with only 90% (to ssp. nebraskensis) and 89% (to ssp. arkansensis) overall nucleotide sequence identity. These new mitogenomes, and their phylogenetic analysis, firmly establish the position of Scarites on the Carabidae family tree and further refine the genus. In addition to the molecular data provided for the Scarites species, this approach also allowed us to identify bacterial and viral signatures for Providencia, Myroides, Spiroplasma, and a giant Nucleocytoviricota virus, associated with the Scarites species. We hereby present a simple and efficient protocol for identification and phylogenetic analysis of Scarites, that is applicable to other Coleoptera, based on total DNA extraction and Illumina short-read Next-Gen sequencing.
Collapse
|
19
|
KÜÇÜK B. MYROİDES ODORATUS/ODORATİMİMUS’A BAĞLI İDRAR YOLU ENFEKSİYONU: OLGU SUNUMU. KAHRAMANMARAŞ SÜTÇÜ İMAM ÜNIVERSITESI TIP FAKÜLTESI DERGISI 2021. [DOI: 10.17517/ksutfd.655652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
|
20
|
Myroides cellulitis and bacteremia: A case report. IDCases 2021; 24:e01061. [PMID: 33850715 PMCID: PMC8024596 DOI: 10.1016/j.idcr.2021.e01061] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 02/20/2021] [Accepted: 03/09/2021] [Indexed: 11/30/2022] Open
Abstract
Formerly classified under the genus Flavobacterium, Myroides species are common gram-negative, environmental bacterium ubiquitous in soil and water. While infrequent, infections of human hosts can result in devastating consequences due the bacteria’s intrinsic multidrug resistance, particularly in those who are immunocompromised. The pathogenicity and mechanisms for resistance remain poorly understood at this time. The case presented in this report details Myroides bacteremia secondary to a soft tissue infection of the lower extremities and adds to the 60 documented infections to date, of which 15 were also characterized by a similar infection.
Collapse
|
21
|
Mahendran AJ, Agrawal S, Rastogi N, Gupta N. Myroides: A Rare but Hard-to-crack Villain in a Critical Care Setup. Indian J Crit Care Med 2021; 25:735-736. [PMID: 34316160 PMCID: PMC8286405 DOI: 10.5005/jp-journals-10071-23845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
How to cite this article: Mahendran AJ, Agrawal S, Rastogi N, et al. Myroides: A Rare but Hard-to-crack Villain in a Critical Care Setup. Indian J Crit Care Med 2021;25(6):735–736.
Collapse
Affiliation(s)
| | - Sumita Agrawal
- Department of Pulmonary, Critical Care and Sleep Medicine, Medipulse Hospital, Jodhpur, Rajasthan, India
| | - Neha Rastogi
- Department of Infectious Diseases, AIIMS, Delhi, India
| | - Nitesh Gupta
- Department of Pulmonary, Critical Care and Sleep Medicine, VMMC and Safdarjung Hospital, Delhi, India
| |
Collapse
|
22
|
Kutlu HH, Avcı M, Dal T, Arı O, Durmaz R. A Healthcare-Associated Outbreak of Urinary Tract Infections Due to Myroides odoratimimus. Jpn J Infect Dis 2020; 73:421-426. [PMID: 33208588 DOI: 10.7883/yoken.jjid.2019.536] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Myroides spp. are low-grade opportunistic pathogens. Outbreaks due to Myroides spp. have rarely been described in the literature to date. We report a healthcare-associated outbreak of urinary tract infections (UTIs), caused by Myroides odoratimimus, in a Turkish hospital. As of March 2019 until May 2019, 6 strains of M. odoratimimus were isolated from the urine samples of patients, all of whom were hospitalized in intensive care units. After identification and antibiotic susceptibility testing using the VITEK 2 system, MALDI-TOF-MS and 16S rRNA-based sequencing methods were performed for confirmation and species-level identification. Pulsed-field gel electrophoresis (PFGE) was performed in order to investigate the clonal relatedness of the isolates. All the patients were immunocompromised and underwent urinary catheterization. None of the patients had urinary neoplasm, surgery, or calculi. VITEK 2 and MALDI-TOF-MS systems revealed that the isolates belonged to the Myroides genus; however, the aforementioned systems neglected to identify the isolates at the species level. The isolates were all successfully identified as M. odoratimimus through 16S rRNA-based sequencing. The isolates were resistant to every antibiotic tested. All isolates had an indistinguishable PFGE pattern, thus indicating cross-transmission between cases. Although M. odoratimimus is rarely isolated from human specimens, clinicians should be aware of its ability to cause UTIs and infectious outbreaks.
Collapse
Affiliation(s)
| | - Meltem Avcı
- Infectious Diseases and Clinical Microbiology, Faculty of Medicine, Usak University, Turkey
| | - Tuba Dal
- Medical Microbiology Department, Faculty of Medicine, Ankara Yildirim Beyazit University, Turkey
| | - Oğuz Arı
- Central Research Laboratory, Ankara Yildirim Beyazit University, Turkey
| | - Rıza Durmaz
- Medical Microbiology Department, Faculty of Medicine, Ankara Yildirim Beyazit University, Turkey.,Central Research Laboratory, Ankara Yildirim Beyazit University, Turkey
| |
Collapse
|
23
|
Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory. Clin Microbiol Rev 2020; 33:33/4/e00053-19. [PMID: 32907806 DOI: 10.1128/cmr.00053-19] [Citation(s) in RCA: 106] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
This review provides a state-of-the-art description of the performance of Sanger cycle sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical microbiology laboratory. A detailed description of the technology and current methodology is outlined with a major focus on proper data analyses and interpretation of sequences. The remainder of the article is focused on a comprehensive evaluation of the application of this method for identification of bacterial pathogens based on analyses of 16S multialignment sequences. In particular, the existing limitations of similarity within 16S for genus- and species-level differentiation of clinically relevant pathogens and the lack of sequence data currently available in public databases is highlighted. A multiyear experience is described of a large regional clinical microbiology service with direct 16S broad-range PCR followed by cycle sequencing for direct detection of pathogens in appropriate clinical samples. The ability of proteomics (matrix-assisted desorption ionization-time of flight) versus 16S sequencing for bacterial identification and genotyping is compared. Finally, the potential for whole-genome analysis by next-generation sequencing (NGS) to replace 16S sequencing for routine diagnostic use is presented for several applications, including the barriers that must be overcome to fully implement newer genomic methods in clinical microbiology. A future challenge for large clinical, reference, and research laboratories, as well as for industry, will be the translation of vast amounts of accrued NGS microbial data into convenient algorithm testing schemes for various applications (i.e., microbial identification, genotyping, and metagenomics and microbiome analyses) so that clinically relevant information can be reported to physicians in a format that is understood and actionable. These challenges will not be faced by clinical microbiologists alone but by every scientist involved in a domain where natural diversity of genes and gene sequences plays a critical role in disease, health, pathogenicity, epidemiology, and other aspects of life-forms. Overcoming these challenges will require global multidisciplinary efforts across fields that do not normally interact with the clinical arena to make vast amounts of sequencing data clinically interpretable and actionable at the bedside.
Collapse
|
24
|
Fernandez M, Pereira PP, Agostini E, González PS. Impact assessment of bioaugmented tannery effluent discharge on the microbiota of water bodies. ECOTOXICOLOGY (LONDON, ENGLAND) 2020; 29:973-986. [PMID: 32556791 DOI: 10.1007/s10646-020-02237-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/30/2020] [Indexed: 05/09/2023]
Abstract
Effluents are commonly discharged into water bodies, and in order for the process to be as environmentally sound as possible, the potential effects on native water communities must be assessed alongside the quality parameters of the effluents themselves. In the present work, changes in the bacterial diversity of streamwater receiving a tannery effluent were monitored by high-throughput MiSeq sequencing. Physico-chemical and microbiological parameters and acute toxicity were also evaluated through different bioassays. After the discharge of treated effluents that had been either naturally attenuated or bioaugmented, bacterial diversity decreased immediately in the streamwater samples, as evidenced by the over-representation of taxa such as Brachymonas, Arcobacter, Marinobacterium, Myroides, Paludibacter and Acinetobacter, typically found in tannery effluents. However, there were no remarkable changes in diversity over time (after 1 day). In terms of the physico-chemical and microbiological parameters analyzed, chemical oxygen demand and total bacterial count increased in response to discharge of the treated effluents. No lethal effects were observed in Lactuca sativa L. seeds or Rhinella arenarum embryos exposed to the streamwater that had received the treated effluents. All of these results contribute to the growing knowledge about the environmental safety of effluent discharge procedures.
Collapse
Affiliation(s)
- Marilina Fernandez
- Departamento de Biología Molecular, FCEFQyN, INBIAS-CONICET, Universidad Nacional de Río Cuarto, 5800 Río Cuarto, Córdoba, Argentina
| | - Paola P Pereira
- Departamento de Biología Molecular, FCEFQyN, INBIAS-CONICET, Universidad Nacional de Río Cuarto, 5800 Río Cuarto, Córdoba, Argentina
| | - Elizabeth Agostini
- Departamento de Biología Molecular, FCEFQyN, INBIAS-CONICET, Universidad Nacional de Río Cuarto, 5800 Río Cuarto, Córdoba, Argentina.
| | - Paola S González
- Departamento de Biología Molecular, FCEFQyN, INBIAS-CONICET, Universidad Nacional de Río Cuarto, 5800 Río Cuarto, Córdoba, Argentina
| |
Collapse
|
25
|
Yang S, Liu Q, Shen Z, Wang H, He L. Molecular Epidemiology of Myroides odoratimimus in Nosocomial Catheter-Related Infection at a General Hospital in China. Infect Drug Resist 2020; 13:1981-1993. [PMID: 32612373 PMCID: PMC7323792 DOI: 10.2147/idr.s251626] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 06/14/2020] [Indexed: 11/30/2022] Open
Abstract
Purpose Catheter-related infection (CRI) is one of the most frequent causes of hospitalizations for immunocompromised patients. A major challenge is the increased prevalence of Myroides odoratimimus. The purpose of the present study was to evaluate the clinical features and molecular characteristics of M. odoratimimus collected from a general hospital in Shanghai, China. Patients and Methods From July 2015 to August 2016, a total of 22 isolates of M. odoratimimus were collected from inpatients respectively from the biliary and pancreatic surgery (6/22) and the urology department (16/22). Clonal relatedness among the isolates was assessed using pulsed-field gel electrophoresis (PFGE) and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Moreover, the antimicrobial susceptibility tests were carried out using the Clinical and Laboratory Standards Institute (CLSI) broth microdilution method. The presence of antibiotic resistance genes was screened using the polymerase chain reaction (PCR) assay. Additionally, protein structure prediction was analyzed using PSIPRED and RaptorX. Results PFGE differentiated these isolates into six possibly related clones from two different departments obtained during a distinct period, indicating clonal dissemination in the two departments. We compared the dendrograms of M. odoratimimus isolates obtained by MALDI-TOF MS with those obtained by PFGE and found that the coincidence rate between them was only 68.2%. All the M. odoratimimus isolates were highly resistant to most available antibiotics, including carbapenems. Furthermore, chromosome-encoded β-lactamases MUS-1 was confirmed by PCR in 6 of 22 Myroides odoratimimus isolates. Herein, we also reported a novel variant of blaMUS-1 in the remaining 16 isolates, which encodes MUS-3 protein at position 60 (Valine to Alanine), differing from the structure of MUS-1. Conclusion The opportunistic and extensively antibiotic-resistant Myroides odoratimimus has a small range of epidemics in these two different departments. Clinicians should be aware that M. odoratimimus may induce a severe nosocomial outbreak of catheter-related infections, particularly in immunocompromised patients.
Collapse
Affiliation(s)
- Shuang Yang
- Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| | - Qian Liu
- Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| | - Zhen Shen
- Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| | - Hua Wang
- Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| | - Lei He
- Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| |
Collapse
|
26
|
Zhang P, Liu M, Fu J, Zhong C, Zong G, Cao G. Identification of a mobilizable, multidrug-resistant genomic island in Myroides odoratimimus isolated from Tibetan pasture. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 723:137970. [PMID: 32217404 DOI: 10.1016/j.scitotenv.2020.137970] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/28/2020] [Accepted: 03/14/2020] [Indexed: 06/10/2023]
Abstract
Strains of the environmental bacterium Myroides odoratimimus can cause human infections. However, treating M. odoratimimus infections can be difficult because of multidrug resistance in this organism. In this study, we isolated strain M. odoratimimus G13 from pastureland in Tibet, China. The minimum inhibitory concentration analysis suggested that strain G13 has resistance to multiple antibiotics, with an MIC for tetracycline of 168 mg/L. Whole-genome sequencing and bioinformatic analysis revealed that the genome of G13 was rich in virulence factor-encoding genes and antibiotic resistance genes (ARGs). The mobilizable genomic island MGI1313 was also identified and characterized, and six resistance genes related to four types of antibiotics were annotated in MGI1313. Conjugation assays indicated that MGI1313 could be transferred from G13 to Escherichia coli 25DN by horizontal gene transfer, resulting in multidrug-resistant E. coli conjugants. In conclusion, multidrug-resistant M. odoratimimus G13 and the mobility of MGI1313 raise the risk of difficult-to-treat bacterial infections and should be under close surveillance.
Collapse
Affiliation(s)
- Peipei Zhang
- The State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China; Department of Epidemiology, the First Affiliated Hospital of Shandong First Medical University, Jinan 250062, China; Shandong Medicinal Biotechnology Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan 250062, China
| | - Meng Liu
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan 250101, China
| | - Jiafang Fu
- Department of Epidemiology, the First Affiliated Hospital of Shandong First Medical University, Jinan 250062, China; Shandong Medicinal Biotechnology Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan 250062, China; Key Laboratory for Biotech-Drugs of National Health Commission, Jinan 250062, China
| | - Chuanqing Zhong
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan 250101, China
| | - Gongli Zong
- Department of Epidemiology, the First Affiliated Hospital of Shandong First Medical University, Jinan 250062, China; Shandong Medicinal Biotechnology Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan 250062, China; Key Laboratory for Biotech-Drugs of National Health Commission, Jinan 250062, China
| | - Guangxiang Cao
- Department of Epidemiology, the First Affiliated Hospital of Shandong First Medical University, Jinan 250062, China; Shandong Medicinal Biotechnology Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan 250062, China.
| |
Collapse
|
27
|
Kutlu HH, Avcı M, Dal T, Arı O, Durmaz R. A healthcare-associated outbreak of urinary tract infections due to Myroides odoratimimus. Jpn J Infect Dis 2020. [PMID: 32475882 DOI: 10.7883/yoken.jjjid.2019.536] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Myroides spp. are low-grade opportunistic pathogens. There were only a few outbreaks due to Myroides spp. described in the literature to date. We report a healthcare-associated outbreak of urinary tract infections caused by Myroides odoratimimus in a Turkish hospital. From March to May 2019, six strains of M. odoratimimus were isolated from the urine samples of patients hospitalized in the intensive care units (ICUs). After identification and antibiotic susceptibility testing with VITEK 2 system, MALDI-TOF-MS and 16S rRNA based sequencing methods were performed for confirmation and species level identification. Pulsed-field gel electrophoresis (PFGE) was used to investigate clonal relatedness of the isolates. All the patients were immunocompromised and underwent urinary catheterization. None of them had urinary neoplasm, surgery or calculi. VITEK 2 and MALDI-TOF-MS systems revealed that the isolates belong to the Myroides genus but lacked to identify the isolates at the species level. 16S rRNA based sequencing successfully identified all the isolates as M. odoratimimus. The isolates were resistant to all antibiotics tested. All isolates had indistinguishable PFGE pattern indicating cross-transmission between cases. Although M. odoratimimus is rarely isolated from human specimens, clinicians should be aware of its ability to cause UTIs and outbreaks.
Collapse
Affiliation(s)
| | - Meltem Avcı
- Infectious Diseases and Clinical Microbiology, Faculty of Medicine, Usak University
| | - Tuba Dal
- Medical Microbiology Department, Faculty of Medicine, Ankara Yildirim Beyazit University
| | - Oğuz Arı
- Central Research Laboratory, Ankara Yildirim Beyazit University
| | - Rıza Durmaz
- Medical Microbiology Department, Faculty of Medicine, Ankara Yildirim Beyazit University
- Central Research Laboratory, Ankara Yildirim Beyazit University
| |
Collapse
|
28
|
Rissardo JP, Caprara ALF. Myroides and Neurology: An Overview. Indian J Med Paediatr Oncol 2020. [DOI: 10.4103/ijmpo.ijmpo_219_19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Affiliation(s)
- Jamir Pitton Rissardo
- Department of Medicine, Federal University of Santa Maria, Santa Maria, Rio Grand do Sul, Brazil
| | | |
Collapse
|
29
|
Host Genetic and Environmental Factors Shape the Composition and Function of Gut Microbiota in Populations Living at High Altitude. BIOMED RESEARCH INTERNATIONAL 2020; 2020:1482109. [PMID: 32190648 PMCID: PMC7071804 DOI: 10.1155/2020/1482109] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 01/20/2020] [Accepted: 01/29/2020] [Indexed: 01/16/2023]
Abstract
The human gut microbiota is affected by genetic and environmental factors. It remains unclear how host genetic and environmental factors affect the composition and function of gut microbiota in populations living at high altitudes. We used a metagenome-wide analysis to investigate the gut microbiota composition in 15 native Tibetans and 12 Hans living on the Tibetan Plateau. The composition of gut microbiota differed significantly between these two groups (P < 0.05). The Planctomycetes was the most abundant phyla both in native Tibetans and in Hans. Furthermore, the most relatively abundant phyla for native Tibetans were Bacteroidetes (15.66%), Firmicutes (11.10%), Proteobacteria (1.32%), Actinobacteria (1.10%), and Tenericutes (0.35%), while the most relatively abundant phyla for Hans were Bacteroidetes (16.28%), Firmicutes (8.41%), Proteobacteria (2.93%), Actinobacteria (0.49%), and Cyanobacteria (0.21%). The abundance of the majority of genera was significantly higher in Tibetans than in Hans (P < 0.01). The number of microbial genes was 4.9 times higher in Tibetans than in Hans. The metabolic pathways and clusters of orthologous groups differed significantly between the two populations (P < 0.05). The abundance of carbohydrate-active enzyme modules and antibiotic resistance genes was significantly lower in Tibetans compared to Hans (P < 0.05). Our results suggest that different genetic factors (race) and environmental factors (diets and consumption of antibiotics) may play important roles in shaping the composition and function of gut microbiota in populations living at high altitudes.
Collapse
|
30
|
Lu Y, Xia W, Zhang X, Ni F, Mei Y. A Confirmed Catheter-Related Blood Stream Infection (CRBSI) in an Immunocompetent Patient Due to Myroides odoratimimus: Case Report and Literature Review. Infect Drug Resist 2020; 13:139-144. [PMID: 32021328 PMCID: PMC6959507 DOI: 10.2147/idr.s234778] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 12/17/2019] [Indexed: 01/12/2023] Open
Abstract
The genus Myroides are gram-negative bacilli which are completely aerobic, non-motile, non-fermenting and yellow-pigmented with a characteristic fruity odor. Myroides species are widely found in the environment, especially in water and soil, and are considered as low-grade opportunistic pathogens for humans. Myroides infections are most commonly seen in immunocompromised patients and only rarely occur in immunocompetent patients. We here report the first confirmed catheter-related bloodstream infection (CRBSI) due to Myroides odoratimimus in an immunocompetent patient. We also review the literature related to Myroides infections.
Collapse
Affiliation(s)
- Yanfei Lu
- Department of Laboratory Medicine, Jiangsu Province Hospital and Nanjing Medical University First Affiliated Hospital, Nanjing, People's Republic of China.,National Key Clinical Department of Laboratory Medicine, Nanjing, People's Republic of China
| | - Wenying Xia
- Department of Laboratory Medicine, Jiangsu Province Hospital and Nanjing Medical University First Affiliated Hospital, Nanjing, People's Republic of China.,National Key Clinical Department of Laboratory Medicine, Nanjing, People's Republic of China
| | - Xiaohui Zhang
- Department of Laboratory Medicine, Jiangsu Province Hospital and Nanjing Medical University First Affiliated Hospital, Nanjing, People's Republic of China.,National Key Clinical Department of Laboratory Medicine, Nanjing, People's Republic of China
| | - Fang Ni
- Department of Laboratory Medicine, Jiangsu Province Hospital and Nanjing Medical University First Affiliated Hospital, Nanjing, People's Republic of China.,National Key Clinical Department of Laboratory Medicine, Nanjing, People's Republic of China
| | - Yaning Mei
- Department of Laboratory Medicine, Jiangsu Province Hospital and Nanjing Medical University First Affiliated Hospital, Nanjing, People's Republic of China.,National Key Clinical Department of Laboratory Medicine, Nanjing, People's Republic of China
| |
Collapse
|
31
|
Pérez-Lazo G, Morales-Moreno A, Soto-Febres F, Jove-Químper H, Morales-Castillo L, Palomares-Reyes C, Del Valle-Mendoza J, Aguilar-Luis M, Silva-Caso W. First report of Myroides phaeus bacteraemia identified by Polymerase chain reaction and genetic sequencing. IDCases 2020; 19:e00695. [PMID: 32021799 PMCID: PMC6994844 DOI: 10.1016/j.idcr.2020.e00695] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 12/31/2019] [Accepted: 01/01/2020] [Indexed: 11/15/2022] Open
Abstract
We report the first case of Myroides phaeus isolated from blood, causing bacteremia in an immunocompromised patient. The relevance of this species is that most strains are resistant to multiple drugs. For identification it was used MicroScan Panel in addition to PCR – genetic sequencing.
We report the first case of Myroides phaeus isolated from blood, causing bacteremia in an immunocompromised patient using the automated MicroScan Walk Away 96 system, followed by bacterial identification by amplification-sequencing of the 16S rDNA. The sequences obtained were compared with the reference sequence of the BLAST ® platform - National Library of Medicine, USA, and the isolation was identified as Myroides phaeus strain with 99.67 % identity in Blast report. In the literature we did not find previous reported cases of infections by this bacterium, however its pathogenic role is still controversial; therefore, this isolation alerts us to carry out an exhaustive surveillance of other possible acquisition routes.
Collapse
Affiliation(s)
- G Pérez-Lazo
- Unidad de Infectología, Hospital Nacional Guillermo Almenara Irigoyen, EsSalud, Lima, Peru
| | - A Morales-Moreno
- Unidad de Infectología, Hospital Nacional Guillermo Almenara Irigoyen, EsSalud, Lima, Peru
| | - F Soto-Febres
- Unidad de Infectología, Hospital Nacional Guillermo Almenara Irigoyen, EsSalud, Lima, Peru
| | - H Jove-Químper
- Servicio de Microbiología, Hospital Nacional Guillermo Almenara Irigoyen, EsSalud, Lima, Peru
| | - L Morales-Castillo
- Servicio de Microbiología, Hospital Nacional Guillermo Almenara Irigoyen, EsSalud, Lima, Peru
| | - C Palomares-Reyes
- School of Medicine, Research and Innovation Centre of the Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas, Av. San Marcos cuadra 2, Chorrillos, Lima, Peru.,Instituto de Investigación Nutricional, Lima, Peru
| | - J Del Valle-Mendoza
- School of Medicine, Research and Innovation Centre of the Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas, Av. San Marcos cuadra 2, Chorrillos, Lima, Peru.,Instituto de Investigación Nutricional, Lima, Peru
| | - M Aguilar-Luis
- School of Medicine, Research and Innovation Centre of the Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas, Av. San Marcos cuadra 2, Chorrillos, Lima, Peru.,Instituto de Investigación Nutricional, Lima, Peru
| | - W Silva-Caso
- Facultad de Ciencias de la Salud, Universidad Tecnológica del Perú, Lima, Peru
| |
Collapse
|
32
|
Deguenon JM, Travanty N, Zhu J, Carr A, Denning S, Reiskind MH, Watson DW, Michael Roe R, Ponnusamy L. Exogenous and endogenous microbiomes of wild-caught Phormia regina (Diptera: Calliphoridae) flies from a suburban farm by 16S rRNA gene sequencing. Sci Rep 2019; 9:20365. [PMID: 31889104 PMCID: PMC6937299 DOI: 10.1038/s41598-019-56733-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 12/17/2019] [Indexed: 01/12/2023] Open
Abstract
The black blow fly, Phormia regina (Meigen) (Diptera: Calliphoridae) is one of the most abundant carrion flies in North America. Calliphorids are important in agriculture and animal production, veterinary sciences, forensics and medical entomology. While the role of flies in the epidemiology of human and animal diseases is an active area of research, little is known about the microorganisms associated with these insects. We examined the diversity of wild-caught black blow fly endogenous (internal body) and exogenous (external body) microbial communities using 16S rRNA gene sequencing. Overall, 27 phyla, 171 families and 533 genera were detected, and diversity was significantly higher (P < 0.05) on external body surfaces. At the genus level, Dysgonomonas, Ignatzschineria, Acinetobacter, Vagococcus, Myroides, and Wohlfahrtiimonas were predominant. Cloning and sequencing of nearly full-length fragments of the 16S rRNA gene showed that some of the species identified are known to be pathogenic to humans, animals, and plants. Myroides odoratimimus and Acinetobacter radioresistens are well-known, multi-drug resistant bacteria. These results provide a snapshot of the microbial communities harbored by adult black blow flies and call for more comprehensive studies to better characterize the role these flies may play in the transmission of pathogenic microorganisms.
Collapse
Affiliation(s)
- Jean M Deguenon
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - Nicholas Travanty
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - Jiwei Zhu
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - Ann Carr
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - Steven Denning
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - Michael H Reiskind
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - David W Watson
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA
| | - R Michael Roe
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA.,Comparative Medicine Institute, North Carolina State University, Raleigh, NC, 27695, USA
| | - Loganathan Ponnusamy
- Department of Entomology and Plant Pathology, 3230 Ligon Street, Campus Box 7647, North Carolina State University, Raleigh, NC, 27695-7647, USA. .,Comparative Medicine Institute, North Carolina State University, Raleigh, NC, 27695, USA.
| |
Collapse
|
33
|
Choudhary M, Choudhary BK, Bera BC, Chaudhari SP, Giri DK, Ghosh RC, Barbuddhe SB. Association of Myroides odoratimimus in immunocompromized piglets with post weaning multisystemic wasting syndrome. J Appl Microbiol 2019; 127:1635-1645. [PMID: 31517421 DOI: 10.1111/jam.14448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 09/05/2019] [Accepted: 09/05/2019] [Indexed: 11/29/2022]
Abstract
AIM To study the association of opportunistic infection due to Myroides odoratimimus in piglets immunocompromised by porcine circovirus type 2 (PCV2) infection. METHODS AND RESULTS The clinical samples (n = 101) were analysed bacteriologically. The isolates were identified by their phenotypes and MALDI TOF-MS analysis as Myroides species. The phylogram constructed based on nucleotide sequences of the 16S rRNA gene showed identity (~99%) with the M. odoratimimus isolates. The minimum inhibitory concentration values for antibiotics revealed M. odoratimimus to be resistant against carbapenem, cephalosporins, aminoglycosides and fluoroquinolones. The presence of PCV2 in affected tissue samples was confirmed by amplification of the 565 bp region of ORF2 of the PCV2 genome. The topology of the phylogenetic tree grouped the PCV2 with cluster-2d. CONCLUSIONS PCV2 being immunosuppressive in nature might have impaired the immunity thereby increasing the susceptibility of immunocompromised piglets to opportunistic pathogens such as M. odoratimimus leading to disease severity and high mortality. The M. odoratimimus isolates were found to be multidrug resistant and evidenced for uncertain clinical relevance and hence could act as hidden source of public health hazard. SIGNIFICANCE AND IMPACT OF THE STUDY Myroides odoratimimus is a rarely reported human pathogen. We reported the incidence of infection due to seemingly rare isolates of M. odoratimimus causing an outbreak of pneumonia in piglets. This appears, to the best of authors' knowledge, to be the first outbreak due to Myroides recorded in animal clinical cases described in the literature.
Collapse
Affiliation(s)
- M Choudhary
- ICAR-National Institute of Biotic Stress Management, Raipur, Chhattisgarh, India
| | - B K Choudhary
- ICAR-National Institute of Biotic Stress Management, Raipur, Chhattisgarh, India
| | - B C Bera
- ICAR-NCVTC, National Research Centre on Equines, Hisar, Haryana, India
| | - S P Chaudhari
- Department of Veterinary Public Health, Centre for Zoonoses, Nagpur Veterinary College, Maharashtra Animal and Fishery Sciences University, Nagpur, India
| | - D K Giri
- Department of Veterinary Pathology, College of Veterinary Science & A.H., Chhattisgarh Kamdhenu Vishwavidylaya, Raipur, Chhattisgarh, India
| | - R C Ghosh
- Department of Veterinary Pathology, College of Veterinary Science & A.H., Chhattisgarh Kamdhenu Vishwavidylaya, Raipur, Chhattisgarh, India
| | - S B Barbuddhe
- ICAR-National Research Centre on Meat, Chengicherla, Hyderabad, India
| |
Collapse
|
34
|
Fernandez M, Pereira PP, Agostini E, González PS. How the bacterial community of a tannery effluent responds to bioaugmentation with the consortium SFC 500-1. Impact of environmental variables. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 247:46-56. [PMID: 31229785 DOI: 10.1016/j.jenvman.2019.06.055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 05/17/2019] [Accepted: 06/11/2019] [Indexed: 06/09/2023]
Abstract
Bioaugmentation with the consortium SFC 500-1 is a promising alternative to remediate wastewaters, such as tannery effluents. With the aim of assessing the changes produced in response to bioaugmentation, bacterial 16S rDNA genes were sequenced with Illumina MiSeq Platform. Additionally, bacterial and fungal groups were analyzed through standard culture dependent methods. The impact of diverse physico-chemical and microbiological parameters on the prokaryotic diversity was also evaluated throughout. Bacteroidetes, Firmicutes and Proteobacteria, represented together up to 91% of the total number of sequences obtained from the tannery effluent. Diversity decreased immediately after inoculation, due to an increase in the representation of the taxa to which the added consortium belongs. However, bioaugmentation produced no greater variations since only a 10% of unique operational taxonomic units were found in the inoculated treatment. An increase in the abundance of Myroides and a reduction in the representation of Proteiniclasticum and Halomonas were major observed variations. On the other hand, pH and dissolved oxygen constituted main environmental factors affecting the structure of the prokaryotic communities. In all treatments yeasts increased over time, to the detriment of filamentous fungi. Together, data from this report may contribute to the development of improved bioremediation strategies of industrial wastewaters.
Collapse
Affiliation(s)
- Marilina Fernandez
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Paola P Pereira
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Elizabeth Agostini
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Paola S González
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| |
Collapse
|
35
|
Meyer A, Dang H, Roland W. Myroides spp. cellulitis and bacteremia: A case report. IDCases 2019; 18:e00638. [PMID: 31538047 PMCID: PMC6745435 DOI: 10.1016/j.idcr.2019.e00638] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 09/05/2019] [Accepted: 09/06/2019] [Indexed: 11/07/2022] Open
Abstract
Myroides spp., formerly Flavobacterium spp., are gram-negative, non-motile, traditionally opportunistic pathogens that are infrequent clinical isolates. Myroides spp. have been pathogenically implicated in only 52 reported cases since the discovery of the Flavobacterium genus in the 1920s. We present a case of Myroides spp. lower extremity cellulitis and bacteremia. To our knowledge, this is the 16th case of cutaneous infection caused by Myroides spp. Etiology of this patient’s infection was felt to be related to exposure of his pre-existing lower extremity wounds to soil and water versus a dog lick in the context of relative immunosuppression from type 2 diabetes and chronic inhaled steroid use. Given the characteristic multi-drug resistance of Myroides spp., resistance to usual empiric antimicrobials given for cellulitis, and potential for fatal infection in cases of pan-resistance, it is important that clinicians remain alert to the possibility of this rare pathogen.
Collapse
Affiliation(s)
- Amy Meyer
- School of Medicine, University of Missouri, Columbia, MO 65212, United States
| | - Harry Dang
- Department of Medicine, University of Missouri, Columbia, MO 65212, United States
| | - William Roland
- Department of Medicine - Division of Infectious Diseases, University of Missouri, Columbia, MO 65212, United States
| |
Collapse
|
36
|
LaVergne S, Gaufin T, Richman D. Myroides injenensis Bacteremia and Severe Cellulitis. Open Forum Infect Dis 2019; 6:ofz282. [PMID: 31334299 DOI: 10.1093/ofid/ofz282] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 06/13/2019] [Indexed: 12/24/2022] Open
Abstract
Myroides spp. are environmental bacterial organisms that rarely cause disease in humans. Myroides spp. infections are infrequently reported in the literature, and Myroides injenensis infections are quite uncommon. Myroides spp. usually infect immunocompromised hosts and can have highly resistant antibiotic susceptibility patterns. Here we report a case of Myroides injenensis bacteremia and severe cellulitis in a patient with cirrhosis and review the literature of other Myroides spp. infections.
Collapse
Affiliation(s)
- Stephanie LaVergne
- Division of Infectious Diseases, University of California, San Diego, La Jolla, California
| | - Thaidra Gaufin
- Division of Infectious Diseases, University of California, San Diego, La Jolla, California
| | - Douglas Richman
- VA San Diego Healthcare System and Division of Infectious Diseases, University of California, San Diego, La Jolla, California
| |
Collapse
|
37
|
Pechal JL, Crippen TL, Cammack JA, Tomberlin JK, Benbow ME. Microbial communities of salmon resource subsidies and associated necrophagous consumers during decomposition: Potential of cross-ecosystem microbial dispersal. FOOD WEBS 2019. [DOI: 10.1016/j.fooweb.2019.e00114] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
38
|
Mwakinyali SE, Ming Z, Xie H, Zhang Q, Li P. Investigation and Characterization of Myroides odoratimimus Strain 3J2MO Aflatoxin B 1 Degradation. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:4595-4602. [PMID: 30907589 DOI: 10.1021/acs.jafc.8b06810] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Aflatoxin B1 (AFB1), is a type I carcinogen that is one of the strongest naturally occurring aflatoxins and can be injurious to humans and livestock upon ingestion, inhalation, or skin contact, with carcinogenic and mutagenic effects. It causes significant hazardous effects to the food- and animal-production industries. We found a bacterial strain, 3J2MO, that degraded AFB1 well, and here we tested and characterized its AFB1-degradation ability. The strain degraded about 93.82% of the AFB1 after incubation for 48 h in Luria-Bertani (LB) medium at 37 °C with a final concentration of 100 ppb and an inoculation quantity of 1 × 107 cfu/mL. High-performance liquid chromatography-fluorescence detection (HPLC-FLD) was used to determine AFB1 amounts. The maximum degradation rates were 89.23% at pH 8.5; 55.78% at an inoculation quantity of 1 × 108 cfu/mL; and 71.50 and 71.21% at 34 and 37 °C, respectively. Treatment with sucrose and soluble starch as carbon sources and beef extract and ammonium acetate as nitrogen sources stimulated the degradation rate. Mg2+ and Ca2+ ions were activators for AFB1 degradation; however, Mn2+, Fe3+, Zn2+, and Cu2+ were strong inhibitors. This bacterial strain has potential in bioremediation and the detoxification of aflatoxin contamination for biocontrol strategies in both agricultural products and food-industry matrices.
Collapse
Affiliation(s)
- Silivano E Mwakinyali
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
- National Food Reserve Agency (NFRA) , Ministry of Agriculture , P.O Box 1050, Dodoma 41000 , United Republic of Tanzania
| | - Zhang Ming
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Huali Xie
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Qi Zhang
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Peiwu Li
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Laboratory of Quality & Safety Risk Assessment for Oilseeds Products, Wuhan , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
- Quality Inspection and Test Center for Oilseeds Products , Ministry of Agriculture , Wuhan 430062 , PR China
| |
Collapse
|
39
|
Peng Z, Zhang J, Fanning S, Wang L, Li M, Maheshwari N, Sun J, Li F. Effects of metal and metalloid pollutants on the microbiota composition of feces obtained from twelve commercial pig farms across China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 647:577-586. [PMID: 30092513 DOI: 10.1016/j.scitotenv.2018.08.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 08/02/2018] [Accepted: 08/02/2018] [Indexed: 06/08/2023]
Abstract
Understanding the metal and metalloid contamination and microbiota composition of pig feces is an important step required to support the design and implementation of effective pollution control and prevention strategies. A survey was implemented in 12 locations across China to investigate the content of metals and metalloids, and the main composition of the microbial communities of commercially reared pigs during two growth periods, defined as the early (Q group) and the later fattening growth phases (H group). These data showed widespread Al, Mn, Cu, Zn, and Fe pollution in pig feces. The concentration of Zn in the Q group feces was nearly two times higher than the levels measured in the H group. The microbial composition of the Q group exhibited greater richness of operational taxonomic units (OTUs) and fewer bacteria associated with zoonotic diseases compared with the microbial composition of the H group. Spearman rank correlation analysis showed that Cu and northern latitudes had a significant positive effect on the richness of bacterial communities in pig feces. Zn and Cd exhibited the biggest impact on microbial community composition based on canonical correspondence analysis. Functional metagenomic prediction indicated that about 0.8% genes present in the pig feces bacteria community are related to human diseases, and significantly more predicted pathogenic genes were detected in the H group than in the Q group. These results support the need to monitor heavy metal contamination and to control for zoonotic pathogens disseminated from pig feces in Chinese pig farms.
Collapse
Affiliation(s)
- Zixin Peng
- Key Laboratory of Food Safety Risk Assessment, Ministry of Health, China National Center for Food Safety Risk Assessment, No. 7(th) Panjiayuan Nanli, Chaoyang District, Beijing 100021, P.R. China
| | - Jinling Zhang
- Weifang Entry-Exit Inspection and Quarantine Bureau, No. 39, Siping Road, Kuiwen District, Weifang City, Shandong Province 261401, P.R. China
| | - Séamus Fanning
- Key Laboratory of Food Safety Risk Assessment, Ministry of Health, China National Center for Food Safety Risk Assessment, No. 7(th) Panjiayuan Nanli, Chaoyang District, Beijing 100021, P.R. China; UCD-Centre for Food Safety, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Liangliang Wang
- Weifang Entry-Exit Inspection and Quarantine Bureau, No. 39, Siping Road, Kuiwen District, Weifang City, Shandong Province 261401, P.R. China
| | - Menghan Li
- Key Laboratory of Food Safety Risk Assessment, Ministry of Health, China National Center for Food Safety Risk Assessment, No. 7(th) Panjiayuan Nanli, Chaoyang District, Beijing 100021, P.R. China
| | - Nikunj Maheshwari
- UCD-Centre for Food Safety, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Jun Sun
- Weifang Entry-Exit Inspection and Quarantine Bureau, No. 39, Siping Road, Kuiwen District, Weifang City, Shandong Province 261401, P.R. China
| | - Fengqin Li
- Key Laboratory of Food Safety Risk Assessment, Ministry of Health, China National Center for Food Safety Risk Assessment, No. 7(th) Panjiayuan Nanli, Chaoyang District, Beijing 100021, P.R. China.
| |
Collapse
|
40
|
Mahapatra A, Mohapatra PR, Choudhury S, Deep N. Empyema caused by Myroides odoratimimus in a patient with liver abscess. Lung India 2019; 36:459-460. [PMID: 31464224 PMCID: PMC6710960 DOI: 10.4103/lungindia.lungindia_42_19] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Affiliation(s)
- Ashoka Mahapatra
- Department of Microbiology, All India Institute of Medical Sciences, Bhubaneswar, Odisha, India
| | - Prasanta R Mohapatra
- Department of Pulmonary Medicine, All India Institute of Medical Sciences, Bhubaneswar, Odisha, India
| | | | - Nerbadyswari Deep
- Department of Radiodiagnosis, All India Institute of Medical Sciences, Bhubaneswar, Odisha, India
| |
Collapse
|
41
|
Screening for ESBL producing bacterial isolates of agricultural soil and profiling for multidrug resistance. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.aasci.2018.04.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
42
|
Lorenzin G, Piccinelli G, Carlassara L, Scolari F, Caccuri F, Caruso A, De Francesco MA. Myroides odoratimimus urinary tract infection in an immunocompromised patient: an emerging multidrug-resistant micro-organism. Antimicrob Resist Infect Control 2018; 7:96. [PMID: 30094005 PMCID: PMC6080552 DOI: 10.1186/s13756-018-0391-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Accepted: 07/31/2018] [Indexed: 01/07/2023] Open
Abstract
Background Myroides spp. are common environmental organisms and they can be isolated predominantly in water, soil, food and in sewage treatment plants. In the last two decades, an increasing number of infections such as urinary tract infections and skin and soft tissue infections, caused by these microorganisms has been reported. Selection of appropriate antibiotic therapy to treat the infections caused by Myroides spp. is difficult due to the production of a biofilm and the organism's intrinsic resistance to many antibiotic classes. Case presentation We report the case of a 69-year-old immunocompromised patient who presented with repeated episodes of macroscopic haematuria, from Northern Italy.A midstream urine sample cultured a Gram negative rod in significant amounts (> 105 colony-forming units (cfu)/mL), which was identified as Myroides odoratimimus. The patient was successfully treated with trimethoprim/sulfamethoxazole after antibiotic susceptibility testing confirmed its activity. Conclusion This case underlines the emergence of multidrug resistant Myroides spp. which are ubiquitous in the environment and it demands that clinicians should be more mindful about the role played by atypical pathogens, which may harbour or express multidrug resistant characteristics, in immunocompromised patients or where there is a failure of empiric antimicrobial therapy.
Collapse
Affiliation(s)
- Giovanni Lorenzin
- Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-Spedali Civili, P. le Spedali Civili 1, 25123 Brescia, Italy
- Institute of Microbiology and Virology, Department of Biomedical, Surgical and Dental Sciences, University of Milan, Milan, Italy
| | - Giorgio Piccinelli
- Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-Spedali Civili, P. le Spedali Civili 1, 25123 Brescia, Italy
| | - Lucrezia Carlassara
- Department of Nephrology, University of Brescia, Hospital of Montichiari, Brescia, Italy
| | - Francesco Scolari
- Department of Nephrology, University of Brescia, Hospital of Montichiari, Brescia, Italy
| | - Francesca Caccuri
- Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-Spedali Civili, P. le Spedali Civili 1, 25123 Brescia, Italy
| | - Arnaldo Caruso
- Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-Spedali Civili, P. le Spedali Civili 1, 25123 Brescia, Italy
| | - Maria Antonia De Francesco
- Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-Spedali Civili, P. le Spedali Civili 1, 25123 Brescia, Italy
| |
Collapse
|
43
|
Licker M, Sorescu T, Rus M, Cirlea N, Horhat F, Jurescu C, Botoca M, Cumpănaş A, Timar R, Muntean D. Extensively drug-resistant Myroides odoratimimus - a case series of urinary tract infections in immunocompromised patients. Infect Drug Resist 2018; 11:743-749. [PMID: 29849466 PMCID: PMC5965371 DOI: 10.2147/idr.s161069] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Purpose We report an outbreak of urinary tract infections (UTIs) caused by Myroides odoratimimus, which occurred in the largest clinical hospital in western Romania. Patients and methods From June to August 2017, four strains of M. odoratimimus were isolated from the urine samples of patients hospitalized in the urology, diabetes, and surgery departments. Hospital records of all patients whose urine cultures were positive for M. odoratimimus were reviewed retrospectively. We also reviewed the cases reported in the literature. Results All UTIs, except one, were hospital-acquired infections. All patients with M. odoratimimus UTIs were immunocompromised. Three patients underwent urinary catheterization with a Foley’s catheter upon admission in the emergency department and one presented for replacement of ureterostomy tubes. All Myroides isolates were resistant to almost all the tested antibiotics. Two patients were successfully treated with tigecycline and one was receiving antimicrobial treatment for another infection at the time of isolation of the microorganism. Conclusion Although M. odoratimimus is an uncommon pathogen, clinicians should be aware of its ability to cause UTI outbreaks, especially in the immunocompromised population. Due to its multi-drug resistance, it is important to rapidly identify Myroides spp. in order to choose the best treatment regimen.
Collapse
Affiliation(s)
- Monica Licker
- Department of Microbiology, "Victor Babeş" University of Medicine and Pharmacy, TimisŞoara, Romania.,Clinical Laboratory, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Teodora Sorescu
- Department of Internal Medicine II, "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,Diabetes Clinic, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Maria Rus
- "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,"Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Natalia Cirlea
- "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Florin Horhat
- Department of Microbiology, "Victor Babeş" University of Medicine and Pharmacy, TimisŞoara, Romania
| | - Cristiana Jurescu
- "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,"Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Mircea Botoca
- Department of Orthopaedics - Traumatology, Urology and Medical Imaging, "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,Urology Unit, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Alin Cumpănaş
- Department of Orthopaedics - Traumatology, Urology and Medical Imaging, "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,Urology Unit, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Romulus Timar
- Department of Internal Medicine II, "Victor BabesŞ" University of Medicine and Pharmacy, TimisŞoara, Romania.,Diabetes Clinic, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| | - Delia Muntean
- Department of Microbiology, "Victor Babeş" University of Medicine and Pharmacy, TimisŞoara, Romania.,Clinical Laboratory, "Pius Brînzeu" Emergency Clinical County Hospital, TimisŞoara, Romania
| |
Collapse
|
44
|
Gunzer F, Rudolph WW, Bunk B, Schober I, Peters S, Müller T, Oberheitmann B, Schröttner P. Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies. Emerg Microbes Infect 2018; 7:61. [PMID: 29618738 PMCID: PMC5884818 DOI: 10.1038/s41426-018-0061-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Revised: 02/16/2018] [Accepted: 02/25/2018] [Indexed: 12/04/2022]
Abstract
The genus Myroides comprises several species of Gram-negative, non-motile, and non-fermenting bacteria, which have been regarded as non-pathogenic for decades. Multiple recent reports, however, underscore the pathogenic potential that Myroides sp. possesses for humans. These bacteria seem to be resistant to a wide range of antibiotics (including ß-lactams and aminoglycosides). Therefore, treatment options are limited. Knowledge of antimicrobial resistance, however, is based on only one meaningful comprehensive study and on data published from case reports. This lack of data motivated us to test 59 strains from our Myroides collection (43 M. odoratimimus and 16 M. odoratus) for resistance against 20 commonly used antibiotics. We also performed molecular analyses to reveal whether our bacteria harbor the genus-specific M. odoratimimus metallo-ß-lactamase (MUS-1) or the M. odoratus metallo ß-lactamase (TUS-1), and other ß-lactamases, which may provide an explanation for the extended antimicrobial resistance.
Collapse
Affiliation(s)
- Florian Gunzer
- Institut für Medizinische Mikrobiologie und Hygiene, Medizinische Fakultät Carl Gustav Carus, TU Dresden, Fetscherstr. 74, 01307, Dresden, Germany
| | - Wolfram W Rudolph
- Institut für Virologie, Medizinische Fakultät Carl Gustav Carus, TU Dresden, Fetscherstr. 74, 01307, Dresden, Germany
| | - Boyke Bunk
- Leibniz-Institut DSMZ-Deutsche Sammlung für Mikroorganismen und Zellkulturen GmbH, Inhoffenstrasse 7 B, 38124, Braunschweig, Germany
| | - Isabel Schober
- Leibniz-Institut DSMZ-Deutsche Sammlung für Mikroorganismen und Zellkulturen GmbH, Inhoffenstrasse 7 B, 38124, Braunschweig, Germany
| | - Sonja Peters
- Leibniz-Zentrum für Marine Tropenforschung (ZMT), Fahrenheitstrasse 6, 28359, Bremen, Germany.,Q-Bioanalytic GmbH, Fischkai 1, 27572, Bremerhaven, Germany
| | - Theres Müller
- Institut für Medizinische Mikrobiologie und Hygiene, Medizinische Fakultät Carl Gustav Carus, TU Dresden, Fetscherstr. 74, 01307, Dresden, Germany
| | | | - Percy Schröttner
- Institut für Medizinische Mikrobiologie und Hygiene, Medizinische Fakultät Carl Gustav Carus, TU Dresden, Fetscherstr. 74, 01307, Dresden, Germany.
| |
Collapse
|
45
|
Myroides Soft Tissue Infections. INFECTIOUS DISEASES IN CLINICAL PRACTICE 2018. [DOI: 10.1097/ipc.0000000000000510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
46
|
Pompilio A, Galardi G, Verginelli F, Muzzi M, Di Giulio A, Di Bonaventura G. Myroides odoratimimus Forms Structurally Complex and Inherently Antibiotic-Resistant Biofilm in a Wound-Like in vitro Model. Front Microbiol 2017; 8:2591. [PMID: 29312264 PMCID: PMC5744432 DOI: 10.3389/fmicb.2017.02591] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Accepted: 12/12/2017] [Indexed: 12/12/2022] Open
Abstract
Myroides odoratimimus is an aerobic, non-fermenting Gram-negative multidrug-resistant bacterium widely distributed in nature that rarely causes infections in immunocompromised patients. We recently described in a diabetic patient a case of recurrent calcaneal ulcer infection caused by a M. odoratimimus strain showing potential for biofilm formation. For the first time, we therefore evaluated the ability of M. odoratimimus to form biofilm under different pH values and glucose concentrations using an in vitro “skin-like” model, and its susceptibility to levofloxacin, meropenem, and tigecycline. The expression of some antibiotic-resistance related genes was also monitored by RT-PCR during planktonic-to-biofilm transition. Our results indicated that M. odoratimimus can produce relevant amounts of biofilm biomass, in a time-dependent manner, especially at acidic pH and regardless of glucose concentration tested. The comparative analysis of MIC and MBC values between planktonic and sessile cells showed that resistance to antibiotics increased during the planktonic-to-biofilm transition. Viable cell count indicated that none of the tested antibiotics were able to completely eradicate preformed biofilms, although meropenem and levofloxacin were the most active causing a significant, dose-independent, reduction of biofilm's viability, as also confirmed by microscopic analysis. RT-PCR showed that antibiotic-resistance related gyrA and acrB genes are over-expressed during the transition from planktonic to sessile (biofilm) lifestyle. Overall, our findings showed that M. odoratimimus can form relevant amounts of inherently antibiotic-resistant biofilm under conditions relevant to wound site, therefore suggesting a role in the pathogenesis of chronic ulcer infections.
Collapse
Affiliation(s)
- Arianna Pompilio
- Department of Medical, Oral & Biotechnological Sciences, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Aging Research Center and Translational Medicine, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy
| | - Giuseppe Galardi
- Department of Medical, Oral & Biotechnological Sciences, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Aging Research Center and Translational Medicine, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy
| | - Fabio Verginelli
- Aging Research Center and Translational Medicine, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Department of Pharmacy, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy
| | - Maurizio Muzzi
- Department of Science, LIME, University of Roma Tre, Rome, Italy
| | - Andrea Di Giulio
- Department of Science, LIME, University of Roma Tre, Rome, Italy
| | - Giovanni Di Bonaventura
- Department of Medical, Oral & Biotechnological Sciences, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Aging Research Center and Translational Medicine, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy
| |
Collapse
|
47
|
Xu S, Chen Y, Fu Z, Li Y, Shi G, Xu X, Liu Y, Wang M. New Subclass B1 Metallo-β-Lactamase Gene from a Clinical Pathogenic Myroides odoratus Strain. Microb Drug Resist 2017; 24:909-914. [PMID: 29227741 DOI: 10.1089/mdr.2017.0233] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Myroides odoratus is a low-virulence opportunistic human pathogen. Infections caused by M. odoratus are not common, but reports are increasing in recent years. The biggest challenge for treatment is its resistance to most antibiotics. In 2015, we isolated a pathogenic multidrug-resistant strain of M. odoratus from a urinary tract infection (UTI) patient's urine sample. To report the experience in managing M. odoratus-related UTI and investigate the genetic mechanism of this carbapenem-resistant strain, we conducted a series of microbiological and molecular studies. The bacterial strain was identified as M. odoratus by 16S rRNA gene sequencing. The minimum inhibitory concentrations (MICs) of 17 antimicrobial agents were determined against this strain. Whole-genome sequencing was performed and screened for possible β-lactamase genes. A β-lactamase gene, blaMOC, was identified by whole-genome sequencing, then cloned and expressed in Escherichia coli DH5α to characterize its function. Antimicrobial susceptibility testing showed that the strain had relatively low MIC to levofloxacin and sulfamethoxazole/trimethoprim (SMZ/TMP). After unsuccessful empirical therapy, the UTI was controlled by levofloxacin in combination with SMZ/TMP. Whole-genome sequencing identified a subclass B1 metallo-β-lactamase gene, blaMOC, which conferred resistance to most β-lactams except for aztreonam and cefepime. In conclusion, a new β-lactamase gene, blaMOC, was found in an isolate of M. odoratus. The broad antimicrobial resistance of this isolate is at least attributed partially to this gene.
Collapse
Affiliation(s)
- Su Xu
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| | - Yijian Chen
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| | - Zhuyingjie Fu
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| | - Ying Li
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| | - Guixiu Shi
- 3 Department of Infectious Diseases, Maternal and Child Health Care Hospital , Zaozhuang, Shandong, China
| | - Xiaogang Xu
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| | - Yang Liu
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China .,4 Infection Control Unit, Huashan Hospital, Fudan University , Shanghai, China
| | - Minggui Wang
- 1 Institute of Antibiotics, Huashan Hospital, Fudan University , Shanghai, China .,2 Key Laboratory of Clinical Pharmacology of Antibiotics , National Health and Family Planning Commission, Shanghai, China
| |
Collapse
|
48
|
Draft Genome Sequence of Myroides sp. N17-2, a Multidrug-Resistant Bacterium Isolated from Radiation-Polluted Soils. GENOME ANNOUNCEMENTS 2017; 5:5/46/e01301-17. [PMID: 29146839 PMCID: PMC5690346 DOI: 10.1128/genomea.01301-17] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report here the 4.29-Mb draft genome sequence of Myroides sp. N17-2, a new bacterium isolated from radiation-polluted soils in Xinjiang, Uyghur Autonomous Region, China. The acquisition of its genome will provide valuable information to reveal the relationship between radiation and multidrug resistance.
Collapse
|
49
|
Willems P, Muller J, Verhaegen J, Saegeman V, Desmet S. How to treat a fulminant erysipelas and sepsis caused by Myroides odoratimimus: case report and literature review. Acta Clin Belg 2017; 72:331-335. [PMID: 27765000 DOI: 10.1080/17843286.2016.1245173] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
We report a case of a 77-year old male who developed a fulminant erysipelas and sepsis, caused by Myroides odoratimimus. Selecting the optimal antibiotic therapy for the treatment of infections with M. odoratimimus is challenging due to limited clinical experience with this micro-organism and its reported multidrug-resistance. Review of previous studies concerning in vitro antibacterial susceptibility and clinical experience with M. odoratimimus resulted in six case reports describing bacteremia, soft tissue and bone infections, pneumonia and urinary tract infections. In vitro susceptibility to aminoglycosides, fluoroquinolones and trimethoprim/sulfamethoxazole is variable. Treatment of M. odoratimimus infections should be based on antimicrobial susceptibility testing results. In a majority of the case reports, including the present one, treatment with fluoroquinolones proved to be a good therapeutic option.
Collapse
Affiliation(s)
- Philippe Willems
- Department of Microbiology and Immunology, Laboratory of Bacteriology and Mycology, KU Leuven – University of Leuven, University Hospitals Leuven, Leuven, Belgium
| | - Jan Muller
- Department of Intensive Care, University Hospitals Leuven, Leuven, Belgium
| | - Jan Verhaegen
- Department of Microbiology and Immunology, Laboratory of Bacteriology and Mycology, KU Leuven – University of Leuven, University Hospitals Leuven, Leuven, Belgium
| | - Veroniek Saegeman
- Department of Microbiology and Immunology, Laboratory of Bacteriology and Mycology, KU Leuven – University of Leuven, University Hospitals Leuven, Leuven, Belgium
| | - Stefanie Desmet
- Department of Microbiology and Immunology, Laboratory of Bacteriology and Mycology, KU Leuven – University of Leuven, University Hospitals Leuven, Leuven, Belgium
| |
Collapse
|
50
|
Infection of recurrent calcaneal ulcer caused by a biofilm-producer Myroides odoratimimus strain. Folia Microbiol (Praha) 2017; 63:203-207. [PMID: 28956275 DOI: 10.1007/s12223-017-0552-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 09/19/2017] [Indexed: 10/18/2022]
Abstract
We report a case of recurrent post-traumatic ulcer infection due to Myroides odoratimimus in an immunocompromised male. We have also reviewed the medical literature on isolated M. odoratimimus infections. The strain, isolated from ulcer discharge, was multidrug-resistant and treatment with meropenem, based on susceptibility testing, led to resolution of infection. The strain was also able to form a relevant amount of biofilm over time, thus suggesting a possible role of sessile communities in the chronicization of infection. To our knowledge, this is the first description of recurrent ulcer infection caused by a biofilm-producer M. odoratimimus strain. This case reminds us of the need to consider uncommon pathogens as etiology of skin and soft tissue infections, especially in immunocompromised patients. Further, since the treatment of infections due to M. odoratimimus is often difficult both due to multidrug resistance and scarce clinical experience, antibiotic therapy should be adapted to in vitro susceptibility testing.
Collapse
|