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Rissanen S, Grzybek M, Orłowski A, Róg T, Cramariuc O, Levental I, Eggeling C, Sezgin E, Vattulainen I. Phase Partitioning of GM1 and Its Bodipy-Labeled Analog Determine Their Different Binding to Cholera Toxin. Front Physiol 2017; 8:252. [PMID: 28536532 PMCID: PMC5422513 DOI: 10.3389/fphys.2017.00252] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Accepted: 04/10/2017] [Indexed: 12/19/2022] Open
Abstract
Driven by interactions between lipids and proteins, biological membranes display lateral heterogeneity that manifests itself in a mosaic of liquid-ordered (Lo) or raft, and liquid-disordered (Ld) or non-raft domains with a wide range of different properties and compositions. In giant plasma membrane vesicles and giant unilamellar vesicles, specific binding of Cholera Toxin (CTxB) to GM1 glycolipids is a commonly used strategy to label raft domains or Lo membrane environments. However, these studies often use acyl-chain labeled bodipy-GM1 (bdGM1), whose headgroup accessibility and membrane order or phase partitioning may differ from those of GM1, rendering the interpretation of CTxB binding data quite problematic. To unravel the molecular basis of CTxB binding to GM1 and bdGM1, we explored the partitioning and the headgroup presentation of these gangliosides in the Lo and Ld phases using atomistic molecular dynamics simulations complemented by CTxB binding experiments. The conformation of both GM1 and bdGM1 was shown to be largely similar in the Lo and Ld phases. However, bdGM1 showed reduction in receptor availability when reconstituted into synthetic bilayer mixtures, highlighting that membrane phase partitioning of the gangliosides plays a considerable role in CTxB binding. Our results suggest that the CTxB binding is predominately modulated by the partitioning of the receptor to an appropriate membrane phase. Further, given that the Lo and Ld partitioning of bdGM1 differs from those of GM1, usage of bdGM1 for studying GM1 behavior in cells can lead to invalid interpretation of experimental data.
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Affiliation(s)
- Sami Rissanen
- Department of Physics, Tampere University of TechnologyTampere, Finland
| | - Michal Grzybek
- Paul Langerhans Institute Dresden of the Helmholtz Centre Munich at the University Clinic Carl Gustav Carus, TU DresdenDresden, Germany.,German Center for Diabetes ResearchNeuherberg, Germany
| | - Adam Orłowski
- Department of Physics, Tampere University of TechnologyTampere, Finland.,Department of Physics and Energy, University of LimerickLimerick, Ireland
| | - Tomasz Róg
- Department of Physics, Tampere University of TechnologyTampere, Finland.,Department of Physics, University of HelsinkiHelsinki, Finland
| | - Oana Cramariuc
- Department of Physics, Tampere University of TechnologyTampere, Finland
| | - Ilya Levental
- Department of Integrative Biology and Pharmacology, University of Texas Health Science CenterHouston, TX, USA
| | - Christian Eggeling
- MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of OxfordOxford, UK
| | - Erdinc Sezgin
- MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of OxfordOxford, UK
| | - Ilpo Vattulainen
- Department of Physics, Tampere University of TechnologyTampere, Finland.,Department of Physics, University of HelsinkiHelsinki, Finland.,MEMPHYS-Center for Biomembrane Physics, University of Southern DenmarkOdense, Denmark
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Abstract
Detailed knowledge of the three-dimensional structure of ganglioside headgroups has allowed the successful design of structural and functional mimics of ganglioside GMI oligosaccharide. Our recent work in this area is reviewed in this paper.
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Affiliation(s)
- Anna Bernardi
- Universita' di Milano, Dipartimento di Chimica Organica e Industriale, Italy.
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3
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Iida-Tanaka N, Fukase K, Utsumi H, Ishizuka I. Conformational studies on a unique bis-sulfated glycolipid using NMR spectroscopy and molecular dynamics simulations. EUROPEAN JOURNAL OF BIOCHEMISTRY 2000; 267:6790-7. [PMID: 11082189 DOI: 10.1046/j.1432-1033.2000.01773.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The time-averaged solution conformation of a unique bis-sulfated glycolipid (HSO3)2-2,6Manalpha-2Glcalpha-1-sn-2,3-O-alkylglycerol , was studied in terms of the torsional angles of two glycosidic linkages, phi (H1-C1-O-Cx) and psi (C1-O-Cx-Hx), derived from heteronuclear three-bond coupling constants (3JC,H), and inter-residual proton-proton distances from J-HMBC 2D and ROESY experiments, respectively. The dihedral angles of Glcalpha1Gro in glycolipids were determined for the first time. The C1-C4 diagonal line of the alpha-glucose ring makes an angle of approximately 120 degrees with the glycerol backbone, suggesting that the alpha-glucose ring is almost parallel to the membrane surface in contrast with the perpendicular orientation of the beta-isomer. Furthermore, minimum-energy states around the conformation were estimated by Monte Carlo/stochastic dynamics (MCSD) mixed-mode simulations and the energy minimization with assisted model building and energy refinement (AMBER) force field. The Glcalpha1Gro linkage has a single minimum-energy structure. On the other hand, three conformers were observed for the Manalpha2Glc linkage. The flexibility of Manalpha2Glc was further confirmed by the absence of inter-residual hydrogen bonds which were judged from the temperature coefficients of the chemical shifts, ddelta/dT (-10-3 p.p.m. degrees C-1), of hydroxy protons. The conformational flexibility may facilitate interaction of extracellular substances with both sulfate groups.
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Affiliation(s)
- N Iida-Tanaka
- Department of Biochemistry, Teikyo University School of Medicine, Tokyo, Japan
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4
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Brocca P, Bernardi A, Raimondi L, Sonnino S. Modeling ganglioside headgroups by conformational analysis and molecular dynamics. Glycoconj J 2000; 17:283-99. [PMID: 11261837 DOI: 10.1023/a:1007161319700] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The conformations and dynamics of gangliosides GM1, GM2, 6'-GM2 and GM4 have been studied by computational means, and the results compared to NMR data. Unconstrained conformational searches were run using the AMBER* force field augmented by MNDO derived parameters for the Neu5Ac anomeric torsion, the GB/SA water solvation model, and the MC/EM alogorithm; extended (10-12 ns) dynamic simulations in GB/SA water were performed with the MC/SD protocol, and the stored structures were minimized. The overall mobility of the Neu5Ac alpha2,3Gal linkage and the position of its minimum energy conformation have been shown to depend mainly on the presence or the absence of a GalNAc residue at the adjacent position. The best quantitative agreement with the available NOE data was achieved after minimization of the structures stored during the MC/SD dynamic runs. The latter protocol appears to reproduce satisfactorily the available experimental data, and can be used with confidence to build three-dimensional models of ganglioside headgroups.
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Affiliation(s)
- P Brocca
- Università di Milano, Dipartimento di Chimica Organica e Industriale, Italy
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5
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Brocca P, Berthault P, Sonnino S. Conformation of the oligosaccharide chain of G(M1) ganglioside in a carbohydrate-enriched surface. Biophys J 1998; 74:309-18. [PMID: 9449331 PMCID: PMC1299383 DOI: 10.1016/s0006-3495(98)77788-4] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The solution structure of ganglioside G(M1) carbohydrate moiety at the surface of a 102-kDa lipid-modified-G(M1) micelle is investigated by high-resolution 1H-NMR in H2O. The micellar surface can be considered a cluster-like lateral distribution of the gangliosides, each single monomer being anchored in a carbohydrate-enriched model membrane matrix. 1H NOESY measurements at short mixing times reveal a rigid trisaccharide core -beta-GalNAc-(1-4)-[alpha-Neu5Ac-(2-3)]-beta-Gal- and a more flexible beta-Gal-(1-3)-beta-GalNAc- terminal glycosidic bond. In the lipid-modified G(M1) ganglioside micellar system, there is no evidence that intermolecular side-by-side carbohydrate interactions modulate, or alter in any way, the head-group spatial arrangement. Possible intermonomer interactions at the level of the branched trisaccharide portion were further investigated on mixed micelles of natural N-glycolyl- and N-acetylneuraminic acid containing G(M1) in D2O, taking advantage of the different NMR features of N-glycolyl- and N-acetylneuraminic acids, which allow discrimination between sialic acid ring proton signals. Measurements of the water/ganglioside-OH proton chemical exchange rates suggest hydroxyl group involvement at position 8 of sialic acid in strong intramolecular interaction processes.
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Affiliation(s)
- P Brocca
- Department of Medical Chemistry and Biochemistry, Medical School, University of Milan, Italy
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6
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Morrow MR, Singh D, Grant CW. Glycosphingolipid acyl chain order profiles: substituent effects. BIOCHIMICA ET BIOPHYSICA ACTA 1995; 1235:239-48. [PMID: 7756331 DOI: 10.1016/0005-2736(95)80010-d] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Fatty acid order parameter profiles were determined by 2H-NMR in order to characterize the arrangement and behaviour of the hydrophobic region of glycosphingolipids (GSLs) dispersed as minor components in phosphatidylcholine/cholesterol membranes. Direct comparison was made amongst species with important fatty acid structural features found in natural glycosphingolipids. Galactosyl ceramides (GalCer) were prepared by partial synthesis having 18:0[d35], D-alpha-OH 18:0[d34], 18:1[d33], and 24:0[d47] fatty acids. Unsonicated multilamellar liposomes of the common natural phospholipid, 1-palmitoyl-2-oleoylphosphatidylcholine (POPC), containing 23% cholesterol, were employed as host matrix. Smoothed profiles of the order parameter, SCD, for 18:0[d35] GalCer proved to be very similar to profiles known for 16:0 and 18:0 fatty acids of glycerolipids in cholesterol-containing bilayers. In general, order along the GSL chain was slightly higher than anticipated for equivalent chain segments in phospholipids. Order parameter profiles for the GSL 18-carbon saturated fatty acids were strikingly similar. However, small quantitative differences were found for glycolipids having D- and L-alpha-hydroxylation at C-2 - the D-stereoisomer being marginally more ordered in the plateau region. Although order profiles have not been reported for unsaturated glycerolipid fatty acids in cholesterol-rich membranes, spectra of 18:1[d33] GalCer appeared to be assignable by applying known ordering effects of cholesterol to existing data for unsaturated glycerolipids. The unsaturated chain was found to be less ordered than saturated 18-carbon chains toward the membrane surface, but more ordered in the region of the bilayer midplane. The ordering may result from cholesterol-induced restriction of isomerisation at the cis-double bond, and represents an apparent exaggeration of a phenomenon known for glycerolipids. Addition of an 'extra' 6 carbons to the fatty acid (24:0[d47] GalCer) produced no significant effect on the order profile to a membrane depth of C-12-C-13. These results suggest that fluid membrane area requirements for GSLs with saturated fatty acids are not strongly influenced by the nature of that fatty acid when the GSL is a minor component. Order parameter profiles for the very long chain GSL deviated to higher order below this point, and formed a second 'plateau' of reduced negative slope toward the methyl terminus: this is characteristic of profiles for very long chain GSLs. These features were essentially unchanged over a range of temperatures providing different degrees of spatial constraint.
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Affiliation(s)
- M R Morrow
- Department of Physics, Memorial University of Newfoundland, St. John's, Canada
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7
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Singh DM, Shan X, Davis JH, Jones DH, Grant CW. Oligosaccharide behavior of complex natural glycosphingolipids in multicomponent model membranes. Biochemistry 1995; 34:451-63. [PMID: 7819237 DOI: 10.1021/bi00002a009] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Wideline 2H NMR of model membranes was used to consider the molecular consequences of factors often suggested as modulators of complex glycosphingolipid oligosaccharide arrangement and motional characteristics at cell surfaces. GM1, asialo-GM1, and globoside were studied as examples of plasma membrane recognition sites. The experimental approach involved substitution of deuterons (D) for protons at specific locations within the carbohydrate chains. Deuterated glycolipids were then dispersed at 7-10 mol% in unsonicated bilayers of 1-palmitoyl-2-oleoylphosphatidylcholine. Factors tested for their significance to carbohydrate chain conformation and dynamics included glycolipid natural alkyl and acyl chain variability, membrane fluidity, and the presence of cholesterol and a charged sugar residue (neuraminic acid). Effects of Ca2+ and membrane-associated protein were briefly considered. Two distinct strategies were employed in substituting deuterons for selected protons of carbohydrate residues. Neither approach necessitated alteration of the glycolipid natural fatty acid composition. (i) Protons of the exocyclic hydroxymethyl group on the terminal Gal residue of GM1 and asialo-GM1, and on the terminal N-acetylgalactosamine (GalNAc) residue of globoside, were replaced with deuterium (producing -CDHOH) by an enzymatic oxidation/reduction cycle. This represents the first application of such an approach to deuteration of complex neutral glycolipids. Spectral results were compared to those obtained for the similarly-deuterated monoglycosyl lipid, galactosylceramide (GalCer), with natural fatty acid composition. Efficacy of this labeling method may in principle be influenced by structural variations within a given glycolipid family. Also, asymmetric rotation of the deuterated group made it less attractive than the second method for relating spectral features to receptor geometry. (ii) A general synthetic, nonenzymatic method was investigated for replacing amino sugar N-acetyl groups with deuterated acetate (-COCD3). The acetate group of the GalNAc residue of globoside, GM1, and asialo-GM1, as well as that on neuraminic acid in GM1, was replaced with -COCD3. This second method afforded better signal-to-noise--an important consideration for 2H NMR. The NMR technique employed had the potential for detecting changes of as little as 10% in oligosaccharide orientation or motional order. Each glycolipid demonstrated clear evidence of preferred average oligosaccharide conformations in all (fluid) membrane environments examined. The most striking observation was that, in fluid matrices, conformation and motional order of the complex oligosaccharide chains were only modestly influenced by factors tested, including natural variation in the glycolipid hydrocarbon chains, membrane fluidity, temperature, and the presence of cholesterol or the N-acetylneuraminic acid (NeuAc) residue on GM1.(ABSTRACT TRUNCATED AT 400 WORDS)
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Affiliation(s)
- D M Singh
- Department of Biochemistry, University of Western Ontario, London, Canada
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8
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Morrow MR, Singh D, Lu D, Grant CW. Glycosphingolipid fatty acid arrangement in phospholipid bilayers: cholesterol effects. Biophys J 1995; 68:179-86. [PMID: 7711240 PMCID: PMC1281675 DOI: 10.1016/s0006-3495(95)80173-6] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Deuterium wide line NMR spectroscopy was used to study cholesterol effects on the ceramide portions of two glycosphingolipids (GSLs) distributed as minor components in fluid membranes. The common existence of very long fatty acids on GSLs was taken into account by including one glycolipid species with fatty acid chain length matching that of the host matrix, and one longer by 6 carbons. N-stearoyl and N-lignoceroyl galactosyl ceramide with perdeuterated fatty acid (18:0[d35] GalCer and 24:0[d47] GalCer) were prepared by partial synthesis. They were dispersed in bilayer membranes having the 18-carbon-fatty-acid phospholipid, 1-stearoyl-2-oleoyl-phosphatidylcholine (SOPC), as major component. Glycolipid fatty acid chain behavior and arrangement were analyzed using order profiles derived from their 2H-NMR spectra. Cholesterol effects on order parameter profiles for 18:0[d35] GalCer, with chain length equal to that of the host matrix, followed the pattern known for acyl chains of phospholipids. The presence of sterol led to restriction of trans/gauche isomerization along the length of the chain, with the largest absolute increase in order parameters being toward the surface, but somewhat greater relative effect just below the "plateau" region. In cholesterol-containing membranes, order parameter profiles for the long chain species, 24:0[d47] GalCer, showed a characteristic secondary "plateau" associated with carbon atoms C14 to C23, a feature also present in SOPC bilayers without cholesterol and in pure hydrated 24:0[d47] GalCer. Cholesterol-induced ordering effects on the long chain glycolipid were similar to those described for the shorter chain species, but were minimal at the methyl terminus. Within a given membrane,SCD profiles for 1 8:O[d3] GalCer and 24:0[d47] GalCer were quantitatively similar to a membrane depth of C13 to C14. SCD values at C16 and C17 were about 15% and 28% higher, respectively, for the long chain GSL than for its short chain analogue inSOPC/cholesterol (compared to 21 and 31%, respectively, in membranes without cholesterol). Nitroxide spin labels attached rigidly to C16 of the long chain glycolipid gave EPR order parameters that were twice as high as for the same spin label at C16 on the shorter chain glycolipid in both matrices. It would appear that the above factors impose a tendency for the "extra" portion of the 24-carbon chain to cross the bilayer midplane where it may interact with terminal portions of acyl chains in the opposing monolayer; however, steric constraints, and probably collision events associated with lateral diffusion, induce wide orientation fluctuations in the segment involved.
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Affiliation(s)
- M R Morrow
- Department of Physics, Memorial University of Newfoundland, St. John's, Canada
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9
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Van Halbeek H. NMR developments in structural studies of carbohydrates and their complexes. Curr Opin Struct Biol 1994. [DOI: 10.1016/s0959-440x(94)90168-6] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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