Thymidine kinase enzyme variants in Physarum polycephalum; change of pattern during the synchronous mitotic cycle

Lack of correlation between histone H4 acetylation and transcription during the Physarum cell cycle

The interaction between nucleosomal proteins and DNA is expected to change during DNA replication as well as during transcription. A possible way of achieving the necessary structural changes is the modification of histones and high mobility group (HMG) proteins. The acetylation of core histones has been studied in various systems (for a review see ref. 1) and a correlation between histone acetylation and transcriptional activity of chromatin has frequently been proposed. In particular, Bradbury and co-workers have reported a cell cycle dependence of histone H4 acetylation in Physarum polycephalum which revealed two correlations: (1) tetraacetylated H4 (H4Ac4) correlated with the rate of transcription and (2) H4 acetylation was inversely correlated with H1 phosphorylation in mitosis. We present evidence here that H4 acetylation does not fit these correlations. Our data clearly show that the acetate content of H4 is high during the S phase, but low during later stages of the cell cycle. H4Ac4 remains at a nearly constant level during the whole cycle, with an elevation during the S phase. Furthermore, experiments with the deacetylase inhibitor sodium-n-butyrate do not support the proposed connection between diacetylated H4 (H4Ac2) and DNA replication. Our data imply that a correlation of H4 acetylation and transcription is unlikely during the cell cycle of Physarum. The conclusions of Bradbury and co-workers are therefore invalid.

Identification and changes in activity of five thymidine kinase forms during the cell cycle of Physarum polycephalum

Five forms of thymidine kinase have been identified on isoelectric focusing gels of Physarum polycephalum supernatants. Their isoelectric points are 5.9, 6.4, 6.7, 6.9 and 7.1. All are inhibited by deoxythymidine 5'-triphosphate (dTTP). The activity of the pI 7.1 form does not change significantly during the cell cycle. The other four forms change in activity. About 1 h before metaphase the activity of the four more acidic forms is first detected. Their activity peaks during telophase, and by 1 h after metaphase there is a 50% decrease in activity of the 5.9 form. By 3 h after metaphase the activity of the 6.4 form has dropped more sharply than the activity of the 6.7 form. By 6 h after metaphase only the activity of the 6.9 form is present in significant amounts in addition to the 7.1 form. The activity of these new acidic forms probably accounts for the reported increase in total thymidine kinase activity during mitosis and early S phase.

Thymidylate synthetase during synchronous nuclear division cycle and differentiation of Physarum polycephalum

Thymidylate synthetase and thymidine kinase activities in wild type strain M3b and in thymidine kinase-deficient mutant TU63 of Physarum polycephalum are studied. Whenever nuclear division occurs in macroplasmodia of wild type, thymidine kinase and thymidylate synthetase activities sharply increase, although the increase of thymidylate synthetase activity is less pronounced than thymidine kinase activity. This is also true for other investigated nuclear divisions during the life cycle of P. polycephalum. It is shown for the first time that thymidylate synthetase is a periodically fluctuating enzyme during the naturally synchronous nuclear division cycle of P. polycephalum with a peak of specific activity in the S phase. In macroplasmodia, as well as after germination of microsclerotia of M3b, thymidine kinase is the dominant enzyme, whereas at the time of the precleavage mitosis in sporulating macroplasmodia thymidylate synthetase is the predominant enzyme. This study describes and compares both dTMP-synthesizing enzymes during proliferation and differentiation of the same organism.

Physarum thymidine kinase. A step or a peak enzyme depending upon temperature of growth

The variations of thymidine kinase or ATP:thymidine 5'-phosphotransferase (EC 2.7.1.21) during the cell cycle of Physarum polycephalum plasmodia have been studied at two extreme physiological temperatures: 22 degrees C and 32 degrees C. At 22 degrees C the enzyme activity increases near mitosis and stays constant during late S and G2 phases, exhibiting the typical pattern of a 'step enzyme'. But at 32 degrees C thymidine kinase activity goes through a maximum 1 h 30 min after mitosis and decreases during the subsequent phases as expected for a 'peak enzyme'. The rate of enzyme degradation and/or inactivation, measured in the presence of metabolic poisons (cycloheximide or dinitrophenol), appears to follow a simple exponential function with a half-life of approximately 3 h and 1 h at 22 degrees C and 32 degrees C respectively. The effect of growth temperature on the decrease of thymidine kinase activity can account entirely for the differences in the pattern of enzyme activity at the two extreme temperatures. Tentative calculations indicate that the rate of enzyme synthesis is nearly constant during the cell cycle except near mitosis, where it is temporarily increased. The results suggest the existence of a regulatory mechanism able to modulate the rate of synthesis of thymidine kinase during the cell cycle.

Pyrimidine metabolism in microplasmodia of Physarum polycephalum

If microplasmodia of Physarum polycephalum are exposed to 14C-labelled pyrimidine nucleosides or bases, an unusual pattern of metabolism is found. Only the nucleosides are taken up. Analysis of the distribution of the radioactivity in the cells revealed that ribonucleosides and deoxyribonucleosides are incorporated into nucleotides; however, a substantial catabolism takes place. Thus incubation with [2-14C]pyrimidine nucleosides readily gives rise to [14C]O2, particularly in the case of [2-14C]thymidine. Due to this a significant part of the trichloroacetic-acid-insoluble radioactivity from exogenously supplied [2-14C]thymidine is not associated with DNA. The pattern of labelling of nucleoside triphosphates from exogenously supplied nucleosides indicated that the de novo synthesis of nucleotides was only partly repressed. An unusual conversion of deoxycytidine into cytidine was noted. Enzyme analysis on cell-free extracts revealed that pyrimidine nucleosides can be salvaged by kinases and that their initial catabolism is initiated by hydrolases. Incubation of microplasmodia with pyrimidine analogues showed that only nucleoside analogues are toxic. The experimental results have led us to propose a scheme for the metabolism of pyrimidine nucleosides and bases in Physarum polycephalum.