• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5075703)   Today's Articles (25)
For: del Toro M, Gargallo R, Eritja R, Jaumot J. Study of the interaction between the G-quadruplex-forming thrombin-binding aptamer and the porphyrin 5,10,15,20-tetrakis-(N-methyl-4-pyridyl)-21,23H-porphyrin tetratosylate. Anal Biochem 2008;379:8-15. [PMID: 18492481 DOI: 10.1016/j.ab.2008.04.044] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2007] [Revised: 04/19/2008] [Accepted: 04/24/2008] [Indexed: 11/21/2022]
Number Cited by Other Article(s)
1
Moura NMM, Guedes S, Salvador D, Oliveira H, Neves MGPMS, Ramos CIV. Is Silver a Precious Metal for G-Quadruplex Stabilization Mediated by Porphyrins? Int J Mol Sci 2024;25:13556. [PMID: 39769320 PMCID: PMC11678824 DOI: 10.3390/ijms252413556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Revised: 12/08/2024] [Accepted: 12/13/2024] [Indexed: 01/11/2025]  Open
2
Agrawal P, Nair MS. Binding mechanism of andrographolide with intramolecular antiparallel G-quadruplexes of therapeutic importance: an in-silico analysis. MOLECULAR SIMULATION 2023. [DOI: 10.1080/08927022.2023.2193647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
3
Aliyu AW, Zainuddin BS, Hou LJ, Yew LC, Mustaffa KMF. Serum Stability of 5’ Cholesterol Triethylene Glycol- 26-OKA and 3’ Cholesterol Triethylene Glycol- 24-OKA modified Protoporphyrin IX DNA-Aptamer and their in vitro Heme binding Characteristics. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2022. [DOI: 10.1016/j.cjac.2022.100219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
4
Yum JH, Sugiyama H, Park S. Harnessing DNA as a Designable Scaffold for Asymmetric Catalysis: Recent Advances and Future Perspectives. CHEM REC 2022;22:e202100333. [PMID: 35312235 DOI: 10.1002/tcr.202100333] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/03/2022] [Accepted: 03/04/2022] [Indexed: 12/27/2022]
5
Assays to Estimate the Binding Affinity of Aptamers. Talanta 2022;238:122971. [PMID: 34857318 DOI: 10.1016/j.talanta.2021.122971] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Revised: 10/10/2021] [Accepted: 10/12/2021] [Indexed: 02/07/2023]
6
Thevendran R, Navien TN, Meng X, Wen K, Lin Q, Sarah S, Tang TH, Citartan M. Mathematical approaches in estimating aptamer-target binding affinity. Anal Biochem 2020;600:113742. [PMID: 32315616 DOI: 10.1016/j.ab.2020.113742] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 03/25/2020] [Accepted: 04/14/2020] [Indexed: 12/19/2022]
7
Bazoobandi M, Bozorgmehr MR, Mahmoudi A, Morsali A. The Effect of Temperature on the Interaction of Phenanthroline-based Ligands with G-quadruplex: In Silico Viewpoint. Comb Chem High Throughput Screen 2019;22:546-554. [PMID: 31642773 DOI: 10.2174/1386207322666191022142629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 08/02/2019] [Accepted: 08/09/2019] [Indexed: 11/22/2022]
8
Lu Y, Yu S, Lin F, Lin F, Zhao X, Wu L, Miao Y, Li H, Deng Y, Geng L. Simultaneous label-free screening of G-quadruplex active ligands from natural medicine via a microfluidic chip electrophoresis-based energy transfer multi-biosensor strategy. Analyst 2018;142:4257-4264. [PMID: 28835953 DOI: 10.1039/c7an00692f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
9
Prado E, Bonnat L, Bonnet H, Lavergne T, Van der Heyden A, Pratviel G, Dejeu J, Defrancq E. Influence of the SPR Experimental Conditions on the G-Quadruplex DNA Recognition by Porphyrin Derivatives. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018;34:13057-13064. [PMID: 30293430 DOI: 10.1021/acs.langmuir.8b02942] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
10
Kanat E, Eksin E, Karacicek B, Eraç Y, Erdem A. Electrochemical Detection of Interaction between Dacarbazine and Nucleic Acids in Comparison to Agarose Gel Electrophoresis. ELECTROANAL 2018. [DOI: 10.1002/elan.201800064] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
11
Zhuo Z, Yu Y, Wang M, Li J, Zhang Z, Liu J, Wu X, Lu A, Zhang G, Zhang B. Recent Advances in SELEX Technology and Aptamer Applications in Biomedicine. Int J Mol Sci 2017;18:2142. [PMID: 29036890 PMCID: PMC5666824 DOI: 10.3390/ijms18102142] [Citation(s) in RCA: 282] [Impact Index Per Article: 35.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2017] [Revised: 10/11/2017] [Accepted: 10/12/2017] [Indexed: 12/11/2022]  Open
12
Islam MM, Sato S, Shinozaki S, Takenaka S. Cyclic ferrocenylnaphthalene diimide derivative as a new class of G-quadruplex DNA binding ligand. Bioorg Med Chem Lett 2017;27:329-335. [DOI: 10.1016/j.bmcl.2016.11.037] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2016] [Revised: 10/19/2016] [Accepted: 11/11/2016] [Indexed: 01/01/2023]
13
A Selective G-Quadruplex DNA-Stabilizing Ligand Based on a Cyclic Naphthalene Diimide Derivative. Molecules 2015;20:10963-79. [PMID: 26076114 PMCID: PMC6272171 DOI: 10.3390/molecules200610963] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Revised: 05/28/2015] [Accepted: 06/08/2015] [Indexed: 02/02/2023]  Open
14
Jeon SH, Moon J, Lee MW, Kim SK. Effects of guanine bases at the central loop on stabilization of the quadruplex DNAs and their interactions with Meso-tetrakis(N-methylpyridium-4-yl)porphyrin. Biophys Chem 2015;205:9-15. [PMID: 26057195 DOI: 10.1016/j.bpc.2015.05.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 05/28/2015] [Accepted: 05/29/2015] [Indexed: 10/23/2022]
15
Kim YH, Lee C, Kim SK, Jeoung SC. Interaction of Metallo- and free base meso-tetrakis(N-methylpyridium-4-yl)porphyrin with a G-quadruplex: Effect of the central metal ions. Biophys Chem 2014;190-191:17-24. [DOI: 10.1016/j.bpc.2014.03.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2014] [Revised: 03/18/2014] [Accepted: 03/21/2014] [Indexed: 02/07/2023]
16
Hsu YR, Kang YW, Fang JY, Lee GY, Chyi JI, Chang CK, Huang CC, Hsu CP, Huang TH, Huang YF, Sun YC, Hsu CH, Chen CC, Li SS, Yeh JA, Yao DJ, Ren F, Wang YL. Investigation of C-terminal domain of SARS nucleocapsid protein-Duplex DNA interaction using transistors and binding-site models. SENSORS AND ACTUATORS. B, CHEMICAL 2014;193:334-339. [PMID: 32288246 PMCID: PMC7126644 DOI: 10.1016/j.snb.2013.11.087] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Revised: 11/12/2013] [Accepted: 11/17/2013] [Indexed: 05/28/2023]
17
Wang Y, Huang C, Kang Y. Incorporation of ligand–receptor binding‐site models and transistor‐based sensors for resolving dissociation constants and number of binding sites. IET Nanobiotechnol 2014;8:10-7. [DOI: 10.1049/iet-nbt.2013.0031] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
18
A convenient sandwich assay of thrombin in biological media using nanoparticle-enhanced fluorescence polarization. Biosens Bioelectron 2014;56:231-6. [PMID: 24508546 DOI: 10.1016/j.bios.2014.01.021] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Revised: 12/24/2013] [Accepted: 01/13/2014] [Indexed: 11/21/2022]
19
Huang CC, Lee GY, Chyi JI, Cheng HT, Hsu CP, Hsu YR, Hsu CH, Huang YF, Sun YC, Chen CC, Li SS, Andrew Yeh J, Yao DJ, Ren F, Wang YL. AlGaN/GaN high electron mobility transistors for protein-peptide binding affinity study. Biosens Bioelectron 2013;41:717-22. [PMID: 23102432 PMCID: PMC7157921 DOI: 10.1016/j.bios.2012.09.066] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Revised: 09/14/2012] [Accepted: 09/27/2012] [Indexed: 01/09/2023]
20
Cohen BA, Bergkvist M. Targeted in vitro photodynamic therapy via aptamer-labeled, porphyrin-loaded virus capsids. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2013;121:67-74. [PMID: 23524248 DOI: 10.1016/j.jphotobiol.2013.02.013] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2013] [Revised: 02/19/2013] [Accepted: 02/20/2013] [Indexed: 01/08/2023]
21
Labib M, Zamay AS, Berezovski MV. Multifunctional electrochemical aptasensor for aptamer clones screening, virus quantitation in blood and viability assessment. Analyst 2013;138:1865-75. [PMID: 23381386 DOI: 10.1039/c3an36771a] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
22
Xie X, Choi B, Largy E, Guillot R, Granzhan A, Teulade-Fichou MP. Asymmetric Distyrylpyridinium Dyes as Red-Emitting Fluorescent Probes for Quadruplex DNA. Chemistry 2013;19:1214-26. [DOI: 10.1002/chem.201203710] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2012] [Indexed: 11/06/2022]
23
Labib M, Berezovski MV. Electrochemical aptasensors for microbial and viral pathogens. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2013;140:155-81. [PMID: 23917779 DOI: 10.1007/10_2013_229] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
24
Diltemiz SE, Ersöz A, Hür D, Keçili R, Say R. 4-Aminophenyl boronic acid modified gold platforms for influenza diagnosis. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2012;33:824-30. [PMID: 25427493 DOI: 10.1016/j.msec.2012.11.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Revised: 07/31/2012] [Accepted: 11/05/2012] [Indexed: 11/19/2022]
25
Manaye S, Eritja R, Aviñó A, Jaumot J, Gargallo R. Porphyrin binding mechanism is altered by protonation at the loops in G-quadruplex DNA formed near the transcriptional activation site of the human c-kit gene. Biochim Biophys Acta Gen Subj 2012;1820:1987-96. [PMID: 23000573 DOI: 10.1016/j.bbagen.2012.09.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2012] [Revised: 09/05/2012] [Accepted: 09/07/2012] [Indexed: 01/08/2023]
26
Combination of chromatographic and chemometric methods to study the interactions between DNA strands. Anal Chim Acta 2012;722:34-42. [DOI: 10.1016/j.aca.2012.02.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2011] [Revised: 01/31/2012] [Accepted: 02/02/2012] [Indexed: 02/07/2023]
27
Direct screening of G-quadruplex ligands from Kalopanax septemlobus (Thunb.) Koidz extract by high performance liquid chromatography. J Chromatogr A 2011;1218:6433-8. [DOI: 10.1016/j.chroma.2011.07.028] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2011] [Revised: 07/05/2011] [Accepted: 07/11/2011] [Indexed: 01/13/2023]
28
Murat P, Singh Y, Defrancq E. Methods for investigating G-quadruplex DNA/ligand interactions. Chem Soc Rev 2011;40:5293-307. [PMID: 21720638 DOI: 10.1039/c1cs15117g] [Citation(s) in RCA: 192] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
29
DNA-binding study of anthraquinone derivatives using Chemometrics methods. Eur J Med Chem 2011;46:2630-8. [DOI: 10.1016/j.ejmech.2011.03.034] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2010] [Revised: 03/05/2011] [Accepted: 03/15/2011] [Indexed: 11/18/2022]
30
Diculescu VC, Chiorcea-Paquim AM, Eritja R, Oliveira-Brett AM. Evaluation of the structure–activity relationship of thrombin with thrombin binding aptamers by voltammetry and atomic force microscopy. J Electroanal Chem (Lausanne) 2011. [DOI: 10.1016/j.jelechem.2010.11.037] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Liu Y, Zhang X, Zhang R, Chen T, Wong YS, Liu J, Zheng WJ. Ruthenium-Porphyrin Complexes Induce Apoptosis by Inhibiting the Generation of Intracellular Reactive Oxygen Species in the Human Hepatoma Cell Line (HepG2). Eur J Inorg Chem 2011. [DOI: 10.1002/ejic.201000968] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
32
Jing M, Bowser MT. Methods for measuring aptamer-protein equilibria: a review. Anal Chim Acta 2011;686:9-18. [PMID: 21237304 PMCID: PMC3026478 DOI: 10.1016/j.aca.2010.10.032] [Citation(s) in RCA: 144] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2010] [Revised: 10/20/2010] [Accepted: 10/21/2010] [Indexed: 12/11/2022]
33
Diculescu VC, Chiorcea-Paquim AM, Eritja R, Oliveira-Brett AM. Thrombin-Binding Aptamer Quadruplex Formation: AFM and Voltammetric Characterization. J Nucleic Acids 2010;2010. [PMID: 20798847 PMCID: PMC2925381 DOI: 10.4061/2010/841932] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Accepted: 03/29/2010] [Indexed: 11/20/2022]  Open
34
Monchaud D, Granzhan A, Saettel N, Guédin A, Mergny JL, Teulade-Fichou MP. "One ring to bind them all"-part I: the efficiency of the macrocyclic scaffold for g-quadruplex DNA recognition. J Nucleic Acids 2010;2010. [PMID: 20725629 PMCID: PMC2915875 DOI: 10.4061/2010/525862] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2010] [Accepted: 02/18/2010] [Indexed: 01/01/2023]  Open
35
Shieh YA, Yang SJ, Wei MF, Shieh MJ. Aptamer-based tumor-targeted drug delivery for photodynamic therapy. ACS NANO 2010;4:1433-42. [PMID: 20166743 DOI: 10.1021/nn901374b] [Citation(s) in RCA: 233] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
36
Rich RL, Myszka DG. Grading the commercial optical biosensor literature-Class of 2008: 'The Mighty Binders'. J Mol Recognit 2010;23:1-64. [PMID: 20017116 DOI: 10.1002/jmr.1004] [Citation(s) in RCA: 111] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
37
Bucek P, Jaumot J, Aviñó A, Eritja R, Gargallo R. pH-Modulated Watson–Crick Duplex–Quadruplex Equilibria of Guanine-Rich and Cytosine-Rich DNA Sequences 140 Base Pairs Upstream of thec-kitTranscription Initiation Site. Chemistry 2009;15:12663-71. [DOI: 10.1002/chem.200901631] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
38
Uzun L, Say R, Unal S, Denizli A. Production of surface plasmon resonance based assay kit for hepatitis diagnosis. Biosens Bioelectron 2009;24:2878-84. [PMID: 19303282 DOI: 10.1016/j.bios.2009.02.021] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2009] [Accepted: 02/18/2009] [Indexed: 02/06/2023]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA