Development of hybrid extreme learning machine based chemo-metrics for precise quantitative analysis of LIBS spectra using internal reference pre-processing method

Predicting the Anticancer Activity of 2-alkoxycarbonylallyl Esters against MDA-MB-231 Breast Cancer - QSAR, Machine Learning and Molecular Docking

BACKGROUND

The continuous increase in mortality of breast cancer and other forms of cancer due to the failure of current drugs, resistance, and associated side effects calls for the development of novel and potent drug candidates.

METHODS

In this study, we used the QSAR and extreme learning machine models in predicting the bioactivities of some 2-alkoxycarbonylallyl esters as potential drug candidates against MDA-MB-231 breast cancer. The lead candidates were docked at the active site of a carbonic anhydrase target.

RESULTS

The QSAR model of choice satisfied the recommended values and was statistically significant. The R²_pred (0.6572) was credence to the predictability of the model. The extreme learning machine ELM-Sig model showed excellent performance superiority over other models against MDAMB- 231 breast cancer. Compound 22 with a docking score of 4.67 kcal mol^-1 displayed better inhibition of the carbonic anhydrase protein, interacting through its carbonyl bonds.

CONCLUSION

The extreme learning machine's ELM-Sig model showed excellent performance superiority over other models and should be exploited in the search for novel anticancer drugs.

Rapid Determination and Quantification of Nutritional and Poisonous Metals in Vastly Consumed Ayurvedic Herbal Medicine (Rejuvenator Shilajit) by Humans Using Three Advanced Analytical Techniques

‏Shilajit is used commonly as Ayurvedic medicine worldwide which is Rasayana herbo-mineral substance and consumed to restore the energetic balance and to prevent diseases like cognitive disorders and Alzheimer. Locally, Shilajit is applied for patients diagnosed with bone fractures. For safety of the patients, the elemental analysis of Shilajit is imperative to evaluate its nutritional quality as well as contamination from heavy metals. The elemental composition of Shilajit was conducted using three advanced analytical techniques (LIBS, ICP, and EDX). For the comparative studies, the two Shilajit kinds mostly sold globally produced in India and Pakistan were collected. Our main focus is to highlight nutritional eminence and contamination of heavy metals to hinge on Shilajit therapeutic potential. In this work, laser-induced breakdown spectroscopy (LIBS) was applied for qualitative and quantitative analysis of the Shilajit. Our LIBS analysis revealed that Shilajit samples composed of several elements like Ca, S, K, Mg, Al, Na, Sr, Fe, P, Si, Mn, Ba, Zn, Ni, B, Cr, Co, Pb, Cu, As, Hg, Se, and Ti. Indian and Pakistani Shilajits were highly enriched with Ca, S, and K nutrients and contained Al, Sr, Mn, Ba, Zn, Ni, B, Cr, Pb, As, and Hg toxins in amounts that exceeded the standard permissible limit. Even though the content of most elements was comparable among both Shilajits, nutrients, and toxins, in general, were accentuated more in Indian Shilajit with the sole detection of Hg and Ti. The elemental quantification was done using self-developed calibration-free laser-induced breakdown spectroscopy (CF-LIBS) method, and LIBS results are in well agreement with the concentrations determined by standard ICP-OES/MS method. To verify our results by LIBS and ICP-OES/MS techniques, EDX spectroscopy was also conducted which confirmed the presence above mentioned elements. This work is highly significant for creating awareness among people suffering due to overdose of this product and save many human lives.

Experimental and Modelling of Alkali-Activated Mortar Compressive Strength Using Hybrid Support Vector Regression and Genetic Algorithm

This paper presents the outcome of work conducted to develop models for the prediction of compressive strength (CS) of alkali-activated limestone powder and natural pozzolan mortar (AALNM) using hybrid genetic algorithm (GA) and support vector regression (SVR) algorithm, for the first time. The developed hybrid GA-SVR-CS1, GA-SVR-CS3, and GA-SVR-CS14 models are capable of estimating the one-day, three-day, and 14-day compressive strength, respectively, of AALNM up to 96.64%, 90.84%, and 93.40% degree of accuracy as measured on the basis of correlation coefficient between the measured and estimated values for a set of data that is excluded from training and testing phase of the model development. The developed hybrid GA-SVR-CS28E model estimates the 28-days compressive strength of AALNM using the 14-days strength, it performs better than hybrid GA-SVR-CS28C model, hybrid GA-SVR-CS28B model, hybrid GA-SVR-CS28A model, and hybrid GA-SVR-CS28D model that respectively estimates the 28-day compressive strength using three-day strength, one day-strength, all the descriptors and seven day-strength with performance improvement of 103.51%, 124.47%, 149.94%, and 262.08% on the basis of root mean square error. The outcome of this work will promote the use of environment-friendly concrete with excellent strength and provide effective as well as efficient ways of modeling the compressive strength of concrete.

Prediction of Band Gap Energy of Doped Graphitic Carbon Nitride Using Genetic Algorithm-Based Support Vector Regression and Extreme Learning Machine

Graphitic carbon nitride is a stable and distinct two dimensional carbon-based polymeric semiconductor with remarkable potentials in organic pollutants degradation, chemical sensors, the reduction of CO2, water splitting and other photocatalytic applications. Efficient utilization of this material is hampered by the nature of its band gap and the rapid recombination of electron-hole pairs. Heteroatom incorporation due to doping alters the symmetry of the semiconductor and has been among the adopted strategies to tailor the band gap for enhancing the visible-light harvesting capacity of the material. Electron modulation and enhancement of reaction active sites due to doping as evident from the change in specific surface area of doped graphitic carbon nitride is employed in this work for modeling the associated band gap using hybrid genetic algorithm-based support vector regression (GSVR) and extreme learning machine (ELM). The developed GSVR performs better than ELM-SINE (with sine activation function), ELM-TRANBAS (with triangular basis activation function) and ELM-SIG (with sigmoid activation function) model with performance enhancement of 69.92%, 73.59% and 73.67%, respectively, on the basis of root mean square error as a measure of performance. The four developed models are also compared using correlation coefficient and mean absolute error while the developed GSVR demonstrates a high degree of precision and robustness. The excellent generalization and predictive strength of the developed models would ultimately facilitate quick determination of the band gap of doped graphitic carbon nitride and enhance its visible-light harvesting capacity for various photocatalytic applications.

Energy Band Gap Modeling of Doped Bismuth Ferrite Multifunctional Material Using Gravitational Search Algorithm Optimized Support Vector Regression

Bismuth ferrite (BiFeO3) is a promising multiferroic and multifunctional inorganic chemical compound with many fascinating application potentials in sensors, photo-catalysis, optical devices, spintronics, and information storage, among others. This class of material has special advantages in the photocatalytic field due to its narrow energy band gap as well as the possibility of the internal polarization suppression of the electron-hole recombination rate. However, the narrow light absorption range, which results in a low degradation efficiency, limits the practical application of the compound. Experimental chemical doping through which the energy band gap of bismuth ferrite compound is tailored to the desired value suitable for a particular application is frequently accompanied by the lattice distortion of the rhombohedral crystal structure. The energy band gap of doped bismuth ferrite is modeled in this contribution through the fusion of a support vector regression (SVR) algorithm with a gravitational search algorithm (GSA) using crystal lattice distortion as a predictor. The proposed hybrid gravitational search based support vector regression HGS-SVR model was evaluated by its mean squared error (MSE), correlation coefficient (CC), and root mean square error (RMSE). The proposed HGS-SVR has an estimation capacity with an up to 98.06% accuracy, as obtained from the correlation coefficient on the testing dataset. The proposed hybrid model has a low MSE and RMSE of 0.0092 ev and 0.0958 ev, respectively. The hybridized algorithm further models the impact of several doping materials on the energy band gap of bismuth ferrite, and the predicted energy gaps are in excellent agreement with the measured values. The precision and robustness exhibited by the developed model substantiate its significance in predicting the energy band gap of doped bismuth ferrite at a relatively low cost while the experimental stress is circumvented.

Building a stable and accurate model for heavy metal detection in mulberry leaves based on a proposed analysis framework and laser-induced breakdown spectroscopy

Laser-induced breakdown spectroscopy (LIBS) was used to rapidly detect heavy metals in mulberry leaves. For the purpose of increasing detection stability and accuracy, a novel analysis framework consisting of a Kohonen self-organizing map (SOM), a variable selection method using the successive projection algorithm (SPA) and uninformative variable elimination (UVE), and a consensus modeling strategy was proposed for processing LIBS data to determine copper (Cu) and chromium (Cr) content. Results showed that the best regression model for Cu and Cr content achieved the residual predictive deviation (RPD) values of 10.0494 and 8.3874, respectively, and root mean square error of prediction (RMSEP) values of 110.4550 and 41.4561, respectively. The proposed strategy provides a high-accuracy and rapid alternative to the traditional method for monitoring heavy metals in mulberry leaves, which could guarantee the quality of mulberry leaves and potentially be used in food-related industries.

Memetic algorithms for training feedforward neural networks: an approach based on gravitational search algorithm

The backpropagation (BP) algorithm is a gradient-based algorithm used for training a feedforward neural network (FNN). Despite the fact that BP is still used today when FNNs are trained, it has some disadvantages, including the following: (i) it fails when non-differentiable functions are addressed, (ii) it can become trapped in local minima, and (iii) it has slow convergence. In order to solve some of these problems, metaheuristic algorithms have been used to train FNN. Although they have good exploration skills, they are not as good as gradient-based algorithms at exploitation tasks. The main contribution of this article lies in its application of novel memetic approaches based on the Gravitational Search Algorithm (GSA) and Chaotic Gravitational Search Algorithm (CGSA) algorithms, called respectively Memetic Gravitational Search Algorithm (MGSA) and Memetic Chaotic Gravitational Search Algorithm (MCGSA), to train FNNs in three classical benchmark problems: the XOR problem, the approximation of a continuous function, and classification tasks. The results show that both approaches constitute suitable alternatives for training FNNs, even improving on the performance of other state-of-the-art metaheuristic algorithms such as ParticleSwarm Optimization (PSO), the Genetic Algorithm (GA), the Adaptive Differential Evolution algorithm with Repaired crossover rate (Rcr-JADE), and the Covariance matrix learning and Bimodal distribution parameter setting Differential Evolution (COBIDE) algorithm. Swarm optimization, the genetic algorithm, the adaptive differential evolution algorithm with repaired crossover rate, and the covariance matrix learning and bimodal distribution parameter setting differential evolution algorithm.

Modeling the Maximum Magnetic Entropy Change of Doped Manganite Using a Grid Search-Based Extreme Learning Machine and Hybrid Gravitational Search-Based Support Vector Regression

The thermal response of a magnetic solid to an applied magnetic field constitutes magnetocaloric effect. The maximum magnetic entropy change (MMEC) is one of the quantitative parameters characterizing this effect, while the magnetic solids exhibiting magnetocaloric effect have great potential in magnetic refrigeration technology as they offer a green solution to the known pollutant-based refrigerants. In order to determine the MMEC of doped manganite and the influence of dopants on the magnetocaloric effect of doped manganite compounds, this work developed a grid search (GS)-based extreme learning machine (ELM) and hybrid gravitational search algorithm (GSA)-based support vector regression (SVR) for estimating the MMEC of doped manganite compounds using ionic radii and crystal lattice parameters as descriptors. Based on the root-mean-square error (RMSE), the developed GSA-SVR-radii model performs better than the existing genetic algorithm (GA)-SVR-ionic model in the literature by 27.09%, while the developed GSA-SVR-crystal model performs better than the existing GA-SVR-lattice model in the literature by 38.34%. Similarly, the developed ELM-GS-crystal model performs better than the existing GA-SVR-ionic model with a performance enhancement of 14.39% and 20.65% using the mean absolute error (MAE) and RMSE, respectively, as performance measuring parameters. The developed models also perform better than the existing models using correlation coefficient as the performance measuring parameter when validated with experimentally measured MMEC. The superior performance of the present models coupled with easy accessibility of the descriptors definitely will facilitate the synthesis of doped manganite compounds with a high magnetocaloric effect without experimental stress.

Hybrid chemometric approach for estimating the heat of detonation of aromatic energetic compounds

This work presents an elegant technique for estimating the heat of detonation (HD) of thirty organic energetic compounds by combining support vector regression (SVR) and gravitational search algorithm (GSA). The work shows that numbers of nitrogen and oxygen atoms as well as the compound molar mass are sufficient as descriptors. On the basis of three performance measuring parameters, the hybrid GSA-SVR outperforms Mortimer and Kamlet (1968), Mohammad and Hamid (2004) and Mohammad (2006) models with performance improvement of 93.951%, 86.197%, and 47.104%, respectively. The superior performance demonstrated by the proposed method would be of immense significance in containing the potential damage of the explosives through quick estimation of HD of organic energetic compounds without loss of experimental precision.