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Xu B, Liu Y, Chen G, Jiang P, Qu Y, Wang M, Kao X. Genome-wide analysis of abnormal splicing regulators and alternative splicing involved in immune regulation in systemic lupus erythematosus. Autoimmunity 2025; 58:2448463. [PMID: 39743791 DOI: 10.1080/08916934.2024.2448463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Revised: 12/17/2024] [Accepted: 12/26/2024] [Indexed: 01/04/2025]
Abstract
Systemic lupus erythematosus (SLE) is an autoimmune disease with complex clinical manifestations and no current cure. Alternative splicing (AS) plays a key role in SLE by regulating immune-related genes, but its genome-wide regulatory mechanisms remain unclear. To investigate the involvement of abnormal splicing regulators and AS events in the immune regulation of SLE. Transcriptome data from the SLE dataset GSE162828 were analyzed for differential gene expression and AS events using bioinformatics tools. Immune infiltration analysis was conducted with CIBERSORT, and co-expression of key splicing factors (SFs) and AS events was assessed using SUVA software. A total of 5144 differentially expressed genes and 73 SFs were identified. Significant immune cell differences were observed between SLE and controls, highlighting SFs such as HNRNPDL, RBM47, TIA1, SSB, and DHX15. Eighty-three AS events were identified, with IRF9 and PTPRC emerging as key regulatory events linked to SLE. Dysregulated SFs influence AS in immune-related genes, affecting immune cell composition and SLE progression. These findings offer potential new therapeutic targets for modulating the immune microenvironment in SLE.
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Affiliation(s)
- Bing Xu
- Department of Rheumatology, The Affiliated Hospital of Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Yuan Liu
- The First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Guangfeng Chen
- Department of Geriatric Medicine, The Affiliated Hospital of Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Ping Jiang
- The First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Yuan Qu
- The First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Mengjie Wang
- The First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Xiliang Kao
- The First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, China
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Thangadurai S, Majkut M, Milgram J, Zaslansky P, Shahar R, Raguin E. Focused ion beam-SEM 3D study of osteodentin in the teeth of the Atlantic wolfish Anarhichas lupus. J Struct Biol 2024; 216:108062. [PMID: 38224900 DOI: 10.1016/j.jsb.2024.108062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 11/25/2023] [Accepted: 01/10/2024] [Indexed: 01/17/2024]
Abstract
The palette of mineralized tissues in fish is wide, and this is particularly apparent in fish dentin. While the teeth of all vertebrates except fish contain a single dentinal tissue type, called orthodentin, dentin in the teeth of fish can be one of several different tissue types. The most common dentin type in fish is orthodentin. Orthodentin is characterized by several key structural features that are fundamentally different from those of bone and from those of osteodentin. Osteodentin, the second-most common dentin type in fish (based on the tiny fraction of fish species out of ∼30,000 extant fish species in which tooth structure was so far studied), is found in most Selachians (sharks and rays) as well as in several teleost species, and is structurally different from orthodentin. Here we examine the hypothesis that osteodentin is similar to anosteocytic bone tissue in terms of its micro- and nano-structure. We use Focused Ion Beam-Scanning Electron Microscopy (FIB/SEM), as well as several other high-resolution imaging techniques, to characterize the 3D architecture of the three main components of osteodentin (denteons, inter-denteonal matrix, and the transition zone between them). We show that the matrix of osteodentin, although acellular, is extremely similar to mammalian osteonal bone matrix, both in general morphology and in the three-dimensional nano-arrangement of its mineralized collagen fibrils. We also document the presence of a complex network of nano-channels, similar to such networks recently described in bone. Finally, we document the presence of strings of hyper-mineralized small 'pearls' which surround the denteonal canals, and characterize their structure.
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Affiliation(s)
- Senthil Thangadurai
- Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Marta Majkut
- ESRF - The European Synchrotron Radiation Facility, ID 19, Grenoble, France
| | - Joshua Milgram
- Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Paul Zaslansky
- Department for Restorative and Preventive Dentistry, Charité-Universitaetsmedizin, Berlin, Germany
| | - Ron Shahar
- Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
| | - Emeline Raguin
- Max Planck Institute of Colloids and Interfaces, Department of Biomaterials, Potsdam, Germany
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Park JE, Je H, Kim CR, Park S, Yu Y, Cho W, Won S, Kang DJ, Han TH, Kwak R, Lee SG, Kim S, Wie JJ. Programming Anisotropic Functionality of 3D Microdenticles by Staggered-Overlapped and Multilayered Microarchitectures. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2309518. [PMID: 38014492 DOI: 10.1002/adma.202309518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 11/10/2023] [Indexed: 11/29/2023]
Abstract
Natural sharkskin features staggered-overlapped and multilayered architectures of riblet-textured anisotropic microdenticles, exhibiting drag reduction and providing a flexible yet strong armor. However, the artificial fabrication of three-dimensional (3D) sharkskin with these unique functionalities and mechanical integrity is a challenge using conventional techniques. In this study, it is reported on the facile microfabrication of multilayered 3D sharkskin through the magnetic actuation of polymeric composites and subsequent chemical shape fixation by casting thin polymeric films. The fabricated hydrophobic sharkskin, with geometric symmetry breaking, achieves anisotropic drag reduction in frontal and backward flow directions against the riblet-textured microdenticles. For mechanical integrity, hard-on-soft multilayered mechanical properties are realized by coating the polymeric sharkskin with thin layers of zinc oxide and platinum, which have higher hardness and recovery behaviors than the polymer. This multilayered hard-on-soft sharkskin exhibits friction anisotropy, mechanical robustness, and structural recovery. Furthermore, coating the MXene nanosheets provides the fabricated sharkskin with a low electrical resistance of ≈5.3 Ω, which leads to high Joule heating (≈229.9 °C at 2.75 V). The proposed magnetomechanical actuation-assisted microfabrication strategy is expected to facilitate the development of devices requiring multifunctional microtextures.
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Affiliation(s)
- Jeong Eun Park
- Department of Organic and Nano Engineering, The Research Institute of Industrial Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Hyeongmin Je
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Chae Ryean Kim
- Department of Chemistry, University of Ulsan, Ulsan, 44610, Republic of Korea
| | - Sudong Park
- Department of Mechanical Convergence Engineering, Hanyang University, Seoul, 04763, Republic of Korea
| | - Yeonuk Yu
- Department of Mechanical Convergence Engineering, Hanyang University, Seoul, 04763, Republic of Korea
| | - Woongbi Cho
- Department of Organic and Nano Engineering, Human-Tech Convergence Program, Hanyang University, Seoul, 04763, Republic of Korea
| | - Sukyoung Won
- Department of Organic and Nano Engineering, The Research Institute of Industrial Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Dong Jun Kang
- Department of Organic and Nano Engineering, The Research Institute of Industrial Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Tae Hee Han
- Department of Organic and Nano Engineering, The Research Institute of Industrial Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Rhokyun Kwak
- Department of Mechanical Convergence Engineering, Institute of Nano Science and Technology, Hanyang University, Seoul, 04763, Republic of Korea
| | - Seung Goo Lee
- Department of Chemistry, University of Ulsan, Ulsan, 44610, Republic of Korea
| | - Sanha Kim
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Jeong Jae Wie
- Department of Organic and Nano Engineering, Human-Tech Convergence Program, Department of Chemical Engineering, Institute of Nano Science and Technology, Hanyang University, Seoul, 04763, Republic of Korea
- Department of Chemical Engineering, The Michael M. Szwarc Polymer Research Institute, State University of New York College of Environmental Science and Forestry, Syracuse, NY, 13210, USA
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Dumont M, Milgram J, Herrel A, Shahar R, Shacham B, Houssin C, Delapré A, Cornette R, Segall M. Show Me Your Teeth And I Will Tell You What You Eat: Differences in Tooth Enamel in Snakes with Different Diets. Integr Comp Biol 2023; 63:265-275. [PMID: 37156518 DOI: 10.1093/icb/icad028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 05/02/2023] [Accepted: 05/05/2023] [Indexed: 05/10/2023] Open
Abstract
Teeth are composed of the hardest tissues in the vertebrate body and have been studied extensively to infer diet in vertebrates. The morphology and structure of enamel is thought to reflect feeding ecology. Snakes have a diversified diet, some species feed on armored lizards, others on soft invertebrates. Yet, little is known about how tooth enamel, and specifically its thickness, is impacted by diet. In this study, we first describe the different patterns of enamel distribution and thickness in snakes. Then, we investigate the link between prey hardness and enamel thickness and morphology by comparing the dentary teeth of 63 species of snakes. We observed that the enamel is deposited asymmetrically at the antero-labial side of the tooth. Both enamel coverage and thickness vary a lot in snakes, from species with thin enamel, only at the tip of the tooth to a full facet covered with enamel. There variations are related with prey hardness: snakes feeding on hard prey have a thicker enamel and a lager enamel coverage while species. Snakes feeding on softer prey have a thin enamel layer confined to the tip of the tooth.
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Affiliation(s)
- Maïtena Dumont
- Laboratory of Bone Biomechanics, Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, HUJI, Rehovot, Israel
| | - Joshua Milgram
- Laboratory of Bone Biomechanics, Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, HUJI, Rehovot, Israel
| | - Anthony Herrel
- Mécanismes Adaptatifs et Evolution, UMR 7179, Muséum National d'Histoire Naturelle CNRS, Paris, France
| | - Ron Shahar
- Laboratory of Bone Biomechanics, Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, HUJI, Rehovot, Israel
| | - Boaz Shacham
- National Natural History Collections, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Céline Houssin
- Institut de Systématique Evolution, Biodiversité (ISYEB), UMR 7205, Muséum National d'Histoire naturelle CNRS, SU, EPHE, UA, CP 50, Paris, France
| | - Arnaud Delapré
- Institut de Systématique Evolution, Biodiversité (ISYEB), UMR 7205, Muséum National d'Histoire naturelle CNRS, SU, EPHE, UA, CP 50, Paris, France
| | - Raphaël Cornette
- Institut de Systématique Evolution, Biodiversité (ISYEB), UMR 7205, Muséum National d'Histoire naturelle CNRS, SU, EPHE, UA, CP 50, Paris, France
| | - Marion Segall
- Institut de Systématique Evolution, Biodiversité (ISYEB), UMR 7205, Muséum National d'Histoire naturelle CNRS, SU, EPHE, UA, CP 50, Paris, France
- Department of Life Sciences, The Natural History Museum, London SW7 5BD, UK
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Zhong J, Huang W, Zhou H. Multifunctionality in Nature: Structure-Function Relationships in Biological Materials. Biomimetics (Basel) 2023; 8:284. [PMID: 37504172 PMCID: PMC10807375 DOI: 10.3390/biomimetics8030284] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 06/25/2023] [Accepted: 06/29/2023] [Indexed: 07/29/2023] Open
Abstract
Modern material design aims to achieve multifunctionality through integrating structures in a diverse range, resulting in simple materials with embedded functions. Biological materials and organisms are typical examples of this concept, where complex functionalities are achieved through a limited material base. This review highlights the multiscale structural and functional integration of representative natural organisms and materials, as well as biomimetic examples. The impact, wear, and crush resistance properties exhibited by mantis shrimp and ironclad beetle during predation or resistance offer valuable inspiration for the development of structural materials in the aerospace field. Investigating cyanobacteria that thrive in extreme environments can contribute to developing living materials that can serve in places like Mars. The exploration of shape memory and the self-repairing properties of spider silk and mussels, as well as the investigation of sensing-actuating and sensing-camouflage mechanisms in Banksias, chameleons, and moths, holds significant potential for the optimization of soft robot designs. Furthermore, a deeper understanding of mussel and gecko adhesion mechanisms can have a profound impact on medical fields, including tissue engineering and drug delivery. In conclusion, the integration of structure and function is crucial for driving innovations and breakthroughs in modern engineering materials and their applications. The gaps between current biomimetic designs and natural organisms are also discussed.
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Affiliation(s)
| | - Wei Huang
- State Key Laboratory of Materials Processing and Die and Mould Technology, School of Materials Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China; (J.Z.); (H.Z.)
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Mitsiadis TA, Pagella P, Capellini TD, Smith MM. The Notch-mediated circuitry in the evolution and generation of new cell lineages: the tooth model. Cell Mol Life Sci 2023; 80:182. [PMID: 37330998 DOI: 10.1007/s00018-023-04831-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 05/19/2023] [Accepted: 06/09/2023] [Indexed: 06/20/2023]
Abstract
The Notch pathway is an ancient, evolutionary conserved intercellular signaling mechanism that is involved in cell fate specification and proper embryonic development. The Jagged2 gene, which encodes a ligand for the Notch family of receptors, is expressed from the earliest stages of odontogenesis in epithelial cells that will later generate the enamel-producing ameloblasts. Homozygous Jagged2 mutant mice exhibit abnormal tooth morphology and impaired enamel deposition. Enamel composition and structure in mammals are tightly linked to the enamel organ that represents an evolutionary unit formed by distinct dental epithelial cell types. The physical cooperativity between Notch ligands and receptors suggests that Jagged2 deletion could alter the expression profile of Notch receptors, thus modifying the whole Notch signaling cascade in cells within the enamel organ. Indeed, both Notch1 and Notch2 expression are severely disturbed in the enamel organ of Jagged2 mutant teeth. It appears that the deregulation of the Notch signaling cascade reverts the evolutionary path generating dental structures more reminiscent of the enameloid of fishes rather than of mammalian enamel. Loss of interactions between Notch and Jagged proteins may initiate the suppression of complementary dental epithelial cell fates acquired during evolution. We propose that the increased number of Notch homologues in metazoa enabled incipient sister cell types to form and maintain distinctive cell fates within organs and tissues along evolution.
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Affiliation(s)
- Thimios A Mitsiadis
- Institute of Oral Biology, Centre for Dental Medicine, University of Zurich, Plattenstrasse 11, 8032, Zurich, Switzerland.
| | - Pierfrancesco Pagella
- Institute of Oral Biology, Centre for Dental Medicine, University of Zurich, Plattenstrasse 11, 8032, Zurich, Switzerland
- Wallenberg Center for Molecular Medicine (WCMM) and Department of Biomedical and Clinical Sciences, Linköpings Universitet, 581 85, Linköping, Sweden
| | - Terence D Capellini
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
| | - Moya Meredith Smith
- Centre for Craniofacial and Regenerative Biology, Faculty of Dentistry, King's College London, London, UK
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Wang D, Han S, Yang M. Tooth Diversity Underpins Future Biomimetic Replications. Biomimetics (Basel) 2023; 8:biomimetics8010042. [PMID: 36810373 PMCID: PMC9944091 DOI: 10.3390/biomimetics8010042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 01/14/2023] [Accepted: 01/15/2023] [Indexed: 01/20/2023] Open
Abstract
Although the evolution of tooth structure seems highly conserved, remarkable diversity exists among species due to different living environments and survival requirements. Along with the conservation, this diversity of evolution allows for the optimized structures and functions of teeth under various service conditions, providing valuable resources for the rational design of biomimetic materials. In this review, we survey the current knowledge about teeth from representative mammals and aquatic animals, including human teeth, herbivore and carnivore teeth, shark teeth, calcite teeth in sea urchins, magnetite teeth in chitons, and transparent teeth in dragonfish, to name a few. The highlight of tooth diversity in terms of compositions, structures, properties, and functions may stimulate further efforts in the synthesis of tooth-inspired materials with enhanced mechanical performance and broader property sets. The state-of-the-art syntheses of enamel mimetics and their properties are briefly covered. We envision that future development in this field will need to take the advantage of both conservation and diversity of teeth. Our own view on the opportunities and key challenges in this pathway is presented with a focus on the hierarchical and gradient structures, multifunctional design, and precise and scalable synthesis.
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Li T, Yongfeng L, Ruiqi L, Mingyue Z, Xiaofeng H. Development and structural characteristics of pseudoosteodentine in the Pacific cutlassfish, Trichiurus lepturus. Tissue Cell 2022; 77:101847. [PMID: 35679688 DOI: 10.1016/j.tice.2022.101847] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 05/26/2022] [Accepted: 05/27/2022] [Indexed: 02/06/2023]
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