1
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Cao S, Xu Y, Zhou T, Wu A. Predicting pragmatic functions of Chinese echo questions using prosody: evidence from acoustic analysis and data modeling. Front Psychol 2024; 15:1322482. [PMID: 38633875 PMCID: PMC11022972 DOI: 10.3389/fpsyg.2024.1322482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 02/15/2024] [Indexed: 04/19/2024] Open
Abstract
Echo questions serve two pragmatic functions (recapitulatory and explicatory) and are subdivided into two types (yes-no echo question and wh-echo question) in verbal communication. Yet to date, most relevant studies have been conducted in European languages like English and Spanish. It remains unknown whether the different functions of echo questions can be conveyed via prosody in spoken Chinese. Additionally, no comparison was made on the diversified algorithmic models in predicting functions by the prosodity of Chinese echo questions, a novel linguistic cognition in nature. This motivated us to use different acoustic cues to predict different pragmatic functions of Chinese echo questions by virtue of acoustic experiment and data modeling. The results showed that for yes-no echo question, explicatory function exhibited higher pitch and intensity patterns than recapitulatory function whereas for wh-echo question, recapitulatory function demonstrated higher pitch and intensity patterns than explicatory function. With regard to data modeling, the algorithm Support Vector Machine (SVM) relative to Random Forest (RF) and Logistic Regression (LR) performed better when predicting different functions using prosodic cues in both yes-no and wh-echo questions. This study from a digitized perspective adds evidence to the cognition of echo questions' functions on a prosodic basis.
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Affiliation(s)
- Siyi Cao
- School of Foreign Languages, Southeast University, Nanjing, China
- Department of Chinese Bilingual Studies, Hong Kong Polytechnic University, Kowloon, Hong Kong SAR, China
| | - Yizhong Xu
- College of Foreign Languages, Nanjing University of Aeronautics and Astronautics, Nanjing, China
| | - Tongquan Zhou
- School of Foreign Languages, Southeast University, Nanjing, China
| | - Anqi Wu
- College of Foreign Languages, Nanjing University of Aeronautics and Astronautics, Nanjing, China
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2
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Kaur BP, Singh H, Hans R, Sharma SK, Kaushal C, Hassan MM, Shah MA. An augmentation aided concise CNN based architecture for COVID-19 diagnosis in real time. Sci Rep 2024; 14:1136. [PMID: 38212647 PMCID: PMC10784465 DOI: 10.1038/s41598-024-51317-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 01/03/2024] [Indexed: 01/13/2024] Open
Abstract
Over 6.5 million people around the world have lost their lives due to the highly contagious COVID 19 virus. The virus increases the danger of fatal health effects by damaging the lungs severely. The only method to reduce mortality and contain the spread of this disease is by promptly detecting it. Recently, deep learning has become one of the most prominent approaches to CAD, helping surgeons make more informed decisions. But deep learning models are computation hungry and devices with TPUs and GPUs are needed to run these models. The current focus of machine learning research is on developing models that can be deployed on mobile and edge devices. To this end, this research aims to develop a concise convolutional neural network-based computer-aided diagnostic system for detecting the COVID 19 virus in X-ray images, which may be deployed on devices with limited processing resources, such as mobile phones and tablets. The proposed architecture aspires to use the image enhancement in first phase and data augmentation in the second phase for image pre-processing, additionally hyperparameters are also optimized to obtain the optimal parameter settings in the third phase that provide the best results. The experimental analysis has provided empirical evidence of the impact of image enhancement, data augmentation, and hyperparameter tuning on the proposed convolutional neural network model, which increased accuracy from 94 to 98%. Results from the evaluation show that the suggested method gives an accuracy of 98%, which is better than popular transfer learning models like Xception, Resnet50, and Inception.
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Affiliation(s)
- Balraj Preet Kaur
- Department of Computer Science and Engineering, DAV University, Jalandhar, India
| | - Harpreet Singh
- Department of Computer Science and Engineering, Thapar Institute of Engineering and Technology, Patiala, India
| | - Rahul Hans
- Department of Computer Science and Engineering, DAV University, Jalandhar, India
| | - Sanjeev Kumar Sharma
- Department of Computer Science and Applications, DAV University, Jalandhar, India
| | - Chetna Kaushal
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, 140401, India
| | - Md Mehedi Hassan
- Computer Science and Engineering Discipline, Khulna University, Khulna, 9208, Bangladesh
| | - Mohd Asif Shah
- Department of Economics, Kebri Dehar University, Kebri Dehar, 250, Ethiopia.
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura, 140401, Punjab, India.
- Division of Research and Development, Lovely Professional University, Phagwara, 144001, Punjab, India.
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3
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Reina-Reina A, Barrera J, Maté A, Trujillo J, Valdivieso B, Gas ME. Developing an interpretable machine learning model for predicting COVID-19 patients deteriorating prior to intensive care unit admission using laboratory markers. Heliyon 2023; 9:e22878. [PMID: 38125502 PMCID: PMC10731083 DOI: 10.1016/j.heliyon.2023.e22878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 11/15/2023] [Accepted: 11/22/2023] [Indexed: 12/23/2023] Open
Abstract
Coronavirus disease (COVID-19) remains a significant global health challenge, prompting a transition from emergency response to comprehensive management strategies. Furthermore, the emergence of new variants of concern, such as BA.2.286, underscores the need for early detection and response to new variants, which continues to be a crucial strategy for mitigating the impact of COVID-19, especially among the vulnerable population. This study aims to anticipate patients requiring intensive care or facing elevated mortality risk throughout their COVID-19 infection while also identifying laboratory predictive markers for early diagnosis of patients. Therefore, haematological, biochemical, and demographic variables were retrospectively evaluated in 8,844 blood samples obtained from 2,935 patients before intensive care unit admission using an interpretable machine learning model. Feature selection techniques were applied using precision-recall measures to address data imbalance and evaluate the suitability of the different variables. The model was trained using stratified cross-validation with k=5 and internally validated, achieving an accuracy of 77.27%, sensitivity of 78.55%, and area under the receiver operating characteristic (AUC) of 0.85; successfully identifying patients at increased risk of severe progression. From a medical perspective, the most important features of the progression or severity of patients with COVID-19 were lactate dehydrogenase, age, red blood cell distribution standard deviation, neutrophils, and platelets, which align with findings from several prior investigations. In light of these insights, diagnostic processes can be significantly expedited through the use of laboratory tests, with a greater focus on key indicators. This strategic approach not only improves diagnostic efficiency but also extends its reach to a broader spectrum of patients. In addition, it allows healthcare professionals to take early preventive measures for those most at risk of adverse outcomes, thereby optimising patient care and prognosis.
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Affiliation(s)
- A. Reina-Reina
- Lucentia Research. Department of Software and Computing System, University of Alicante, Carretera San Vicente del Raspeig s/n, 03690, Alicante, Spain
- Lucentia Lab, Av. Pintor Pérez Gil, 16, 03540, Alicante, Spain
| | - J.M. Barrera
- Lucentia Research. Department of Software and Computing System, University of Alicante, Carretera San Vicente del Raspeig s/n, 03690, Alicante, Spain
- Lucentia Lab, Av. Pintor Pérez Gil, 16, 03540, Alicante, Spain
| | - A. Maté
- Lucentia Research. Department of Software and Computing System, University of Alicante, Carretera San Vicente del Raspeig s/n, 03690, Alicante, Spain
- Lucentia Lab, Av. Pintor Pérez Gil, 16, 03540, Alicante, Spain
| | - J.C. Trujillo
- Lucentia Research. Department of Software and Computing System, University of Alicante, Carretera San Vicente del Raspeig s/n, 03690, Alicante, Spain
- Lucentia Lab, Av. Pintor Pérez Gil, 16, 03540, Alicante, Spain
| | - B. Valdivieso
- The University and Polytechnic La Fe Hospital of Valencia, Avenida Fernando Abril Martorell, 106 Torre H 1st floor, 46026, Valencia, Spain
- The Medical Research Institute of Hospital La Fe, Avenida Fernando Abril Martorell, 106 Torre F 7th floor, 46026, Valencia, Spain
| | - María-Eugenia Gas
- The Medical Research Institute of Hospital La Fe, Avenida Fernando Abril Martorell, 106 Torre F 7th floor, 46026, Valencia, Spain
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Ahmad I, Merla A, Ali F, Shah B, AlZubi AA, AlZubi MA. A deep transfer learning approach for COVID-19 detection and exploring a sense of belonging with Diabetes. Front Public Health 2023; 11:1308404. [PMID: 38026271 PMCID: PMC10657998 DOI: 10.3389/fpubh.2023.1308404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023] Open
Abstract
COVID-19 is an epidemic disease that results in death and significantly affects the older adult and those afflicted with chronic medical conditions. Diabetes medication and high blood glucose levels are significant predictors of COVID-19-related death or disease severity. Diabetic individuals, particularly those with preexisting comorbidities or geriatric patients, are at a higher risk of COVID-19 infection, including hospitalization, ICU admission, and death, than those without Diabetes. Everyone's lives have been significantly changed due to the COVID-19 outbreak. Identifying patients infected with COVID-19 in a timely manner is critical to overcoming this challenge. The Real-Time Polymerase Chain Reaction (RT-PCR) diagnostic assay is currently the gold standard for COVID-19 detection. However, RT-PCR is a time-consuming and costly technique requiring a lab kit that is difficult to get in crises and epidemics. This work suggests the CIDICXR-Net50 model, a ResNet-50-based Transfer Learning (TL) method for COVID-19 detection via Chest X-ray (CXR) image classification. The presented model is developed by substituting the final ResNet-50 classifier layer with a new classification head. The model is trained on 3,923 chest X-ray images comprising a substantial dataset of 1,360 viral pneumonia, 1,363 normal, and 1,200 COVID-19 CXR images. The proposed model's performance is evaluated in contrast to the results of six other innovative pre-trained models. The proposed CIDICXR-Net50 model attained 99.11% accuracy on the provided dataset while maintaining 99.15% precision and recall. This study also explores potential relationships between COVID-19 and Diabetes.
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Affiliation(s)
- Ijaz Ahmad
- Digital Transition, Innovation and Health Service, Leonardo da Vinci Telematic University, Chieti, Italy
| | - Arcangelo Merla
- Department of Engineering and Geology (INGEO) University "G. d’Annunzio" Chieti-Pescara, Pescara, Italy
| | - Farman Ali
- Department of Computer Science and Engineering, School of Convergence, College of Computing and Informatics, Sungkyunkwan University, Seoul, Republic of Korea
| | - Babar Shah
- College of Technological Innovation, Zayed University, Dubai, United Arab Emirates
| | - Ahmad Ali AlZubi
- Department of Computer Science, Community College, King Saud University, Riyadh, Saudi Arabia
| | - Mallak Ahmad AlZubi
- Faculty of Medicine, Jordan University of Science and Technology, Irbid, Jordan
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Zhunissova U, Dzierżak R, Omiotek Z, Lytvynenko V. A Novel COVID-19 Diagnosis Approach Utilizing a Comprehensive Set of Diagnostic Information (CSDI). J Clin Med 2023; 12:6912. [PMID: 37959377 PMCID: PMC10649663 DOI: 10.3390/jcm12216912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 10/19/2023] [Accepted: 10/31/2023] [Indexed: 11/15/2023] Open
Abstract
The aim of the study was to develop a computerized method for distinguishing COVID-19-affected cases from cases of pneumonia. This task continues to be a real challenge in the practice of diagnosing COVID-19 disease. In the study, a new approach was proposed, using a comprehensive set of diagnostic information (CSDI) including, among other things, medical history, demographic data, signs and symptoms of the disease, and laboratory results. These data have the advantage of being much more reliable compared with data based on a single source of information, such as radiological imaging. On this basis, a comprehensive process of building predictive models was carried out, including such steps as data preprocessing, feature selection, training, and evaluation of classification models. During the study, 9 different methods for feature selection were used, while the grid search method and 12 popular classification algorithms were employed to build classification models. The most effective model achieved a classification accuracy (ACC) of 85%, a sensitivity (TPR) equal to 83%, and a specificity (TNR) of 88%. The model was built using the random forest method with 15 features selected using the recursive feature elimination selection method. The results provide an opportunity to build a computer system to assist the physician in the diagnosis of the COVID-19 disease.
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Affiliation(s)
- Ulzhalgas Zhunissova
- Department of Biostatistics, Bioinformatics and Information Technologies, Astana Medical University, Beibitshilik Street 49A, Astana 010000, Kazakhstan
| | - Róża Dzierżak
- Faculty of Electrical Engineering and Computer Science, Lublin University of Technology, Nadbystrzycka 38 A, 20-618 Lublin, Poland
| | - Zbigniew Omiotek
- Faculty of Electrical Engineering and Computer Science, Lublin University of Technology, Nadbystrzycka 38 A, 20-618 Lublin, Poland
| | - Volodymyr Lytvynenko
- Department of Informatics and Computer Science, Kherson National Technical University, Beryslavs’ke Hwy, 24, 730082 Kherson, Kherson Oblast, Ukraine
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Yuan J, Wu F, Li Y, Li J, Huang G, Huang Q. DPDH-CapNet: A Novel Lightweight Capsule Network with Non-routing for COVID-19 Diagnosis Using X-ray Images. J Digit Imaging 2023; 36:988-1000. [PMID: 36813978 PMCID: PMC9946284 DOI: 10.1007/s10278-023-00791-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 01/26/2023] [Accepted: 01/29/2023] [Indexed: 02/24/2023] Open
Abstract
COVID-19 has claimed millions of lives since its outbreak in December 2019, and the damage continues, so it is urgent to develop new technologies to aid its diagnosis. However, the state-of-the-art deep learning methods often rely on large-scale labeled data, limiting their clinical application in COVID-19 identification. Recently, capsule networks have achieved highly competitive performance for COVID-19 detection, but they require expensive routing computation or traditional matrix multiplication to deal with the capsule dimensional entanglement. A more lightweight capsule network is developed to effectively address these problems, namely DPDH-CapNet, which aims to enhance the technology of automated diagnosis for COVID-19 chest X-ray images. It adopts depthwise convolution (D), point convolution (P), and dilated convolution (D) to construct a new feature extractor, thus successfully capturing the local and global dependencies of COVID-19 pathological features. Simultaneously, it constructs the classification layer by homogeneous (H) vector capsules with an adaptive, non-iterative, and non-routing mechanism. We conduct experiments on two publicly available combined datasets, including normal, pneumonia, and COVID-19 images. With a limited number of samples, the parameters of the proposed model are reduced by 9x compared to the state-of-the-art capsule network. Moreover, our model has faster convergence speed and better generalization, and its accuracy, precision, recall, and F-measure are improved to 97.99%, 98.05%, 98.02%, and 98.03%, respectively. In addition, experimental results demonstrate that, contrary to the transfer learning method, the proposed model does not require pre-training and a large number of training samples.
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Affiliation(s)
- Jianjun Yuan
- College of Artificial Intelligence, Southwest University, Chongqing, 40075, China.
| | - Fujun Wu
- College of Artificial Intelligence, Southwest University, Chongqing, 40075, China
| | - Yuxi Li
- College of Artificial Intelligence, Southwest University, Chongqing, 40075, China
| | - Jinyi Li
- College of Artificial Intelligence, Southwest University, Chongqing, 40075, China
| | - Guojun Huang
- College of Artificial Intelligence, Southwest University, Chongqing, 40075, China
| | - Quanyong Huang
- College of Machinery and Automation, Wuhan University of Science and Technology, Heping Avenue No. 947, Wuhan, Hubei Province, 430091, China.
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COVINet: A hybrid model for classification of COVID and Non-COVID pneumonia in CT and X-Ray imagery. INTERNATIONAL JOURNAL OF COGNITIVE COMPUTING IN ENGINEERING 2023; 4:149-159. [PMCID: PMC10017176 DOI: 10.1016/j.ijcce.2023.03.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/13/2023] [Accepted: 03/14/2023] [Indexed: 01/05/2024]
Abstract
The COVID-19 pandemic has resulted in a significant increase in the number of pneumonia cases, including those caused by the Coronavirus. To detect COVID pneumonia, RT-PCR is used as the primary detection tool for COVID-19 pneumonia but chest imaging, including CT scans and X-Ray imagery, can also be used as a secondary important tool for the diagnosis of pneumonia, including COVID pneumonia. However, the interpretation of chest imaging in COVID-19 pneumonia can be challenging, as the signs of the disease on imaging may be subtle and may overlap with normal pneumonia. In this paper, we propose a hybrid model with the name COVINet which uses ResNet-101 as the feature extractor and classical K-Nearest Neighbors as the classifier that led us to give automated results for detecting COVID pneumonia in X-Rays and CT imagery. The proposed hybrid model achieved a classification accuracy of 98.6%. The model's precision, recall, and F1-Score values were also impressive, ranging from 98-99%. To back and support the proposed model, several CNN-based feature extractors and classical machine learning classifiers have been exploited. The outcome with exploited combinations suggests that our model can significantly enhance the accuracy and precision of detecting COVID-19 pneumonia on chest imaging, and this holds the potential of being a valuable resource for early identification and diagnosis of the illness by radiologists and medical practitioners.
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Panjeta M, Reddy A, Shah R, Shah J. Artificial intelligence enabled COVID-19 detection: techniques, challenges and use cases. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-28. [PMID: 37362659 PMCID: PMC10224655 DOI: 10.1007/s11042-023-15247-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 03/10/2023] [Accepted: 03/30/2023] [Indexed: 06/28/2023]
Abstract
Deep Learning and Machine Learning are becoming more and more popular as their algorithms get progressively better, and their use is expected to have the large effect on improving the health care system. Also, the pandemic was a chance to show how adding AI to healthcare infrastructure could help, since infrastructures around the world are overworked and falling apart. These new technologies can be used to fight COVID-19 because they are flexible and can be changed. Based on these facts, we looked at how the ML and DL-based models can be used to deal with the COVID-19 pandemic problem and what the pros and cons of each are. This paper gives a full look at the different ways to find COVID-19. We looked at the COVID-19 issues in a systematic way and then rated the methods and techniques for finding it based on their availability, ease of use, accuracy, and cost. We have also shown in pictures how well each of the detection techniques works. We did a comparison of different detection models based on the above factors. This helps researchers understand the different methods and the pros and cons of using them as the basis for their research. In the last part, we talk about the open challenges and research questions that come with putting these techniques together with other detection methods.
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Affiliation(s)
- Manisha Panjeta
- Department of Computer Science and Engineering, Thapar Institute of Engineering Technology, Punjab, 147004 India
| | - Aryan Reddy
- Computer Science Department, NMIMS University, Mumbai, India
| | - Rushabh Shah
- Computer Science Department, NMIMS University, Mumbai, India
| | - Jash Shah
- Computer Science Department, NMIMS University, Mumbai, India
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Subramaniam K, Palanisamy N, Sinnaswamy RA, Muthusamy S, Mishra OP, Loganathan AK, Ramamoorthi P, Gnanakkan CARC, Thangavel G, Sundararajan SCM. A comprehensive review of analyzing the chest X-ray images to detect COVID-19 infections using deep learning techniques. Soft comput 2023; 27:1-22. [PMID: 37362273 PMCID: PMC10220331 DOI: 10.1007/s00500-023-08561-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/18/2023] [Indexed: 06/28/2023]
Abstract
COVID-19, a highly infectious respiratory disease a used by SARS virus, has killed millions of people across many countries. To enhance quick and accurate diagnosis of COVID-19, chest X-ray (CXR) imaging methods were commonly utilized. Identifying the infection manually by radio imaging, on the other hand, was considered, extremely difficult due to the time commitment and significant risk of human error. Emerging artificial intelligence (AI) techniques promised exploration in the development of precise and as well as automated COVID-19 detection tools. Convolution neural networks (CNN), a well performing deep learning strategy tends to gain substantial favors among AI approaches for COVID-19 classification. The preprints and published studies to diagnose COVID-19 with CXR pictures using CNN and other deep learning methodologies are reviewed and critically assessed in this research. This study focused on the methodology, algorithms, and preprocessing techniques used in various deep learning architectures, as well as datasets and performance studies of several deep learning architectures used in prediction and diagnosis. Our research concludes with a list of future research directions in COVID-19 imaging categorization.
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Affiliation(s)
- Kavitha Subramaniam
- Department of Computer Science and Engineering, Kongu Engineering College (Autonomous), Perundurai, Erode, Tamil Nadu India
| | - Natesan Palanisamy
- Department of Computer Science and Engineering, Kongu Engineering College (Autonomous), Perundurai, Erode, Tamil Nadu India
| | - Renugadevi Ammapalayam Sinnaswamy
- Department of Electronics and Communication Engineering, Kongu Engineering College (Autonomous), Perundurai, Erode, Tamil Nadu India
| | - Suresh Muthusamy
- Department of Electronics and Communication Engineering, Kongu Engineering College (Autonomous), Perundurai, Erode, Tamil Nadu India
| | - Om Prava Mishra
- Department of Electronics and Communication Engineering, Vel Tech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology, Avadi, Chennai, Tamil Nadu India
| | - Ashok Kumar Loganathan
- Department of Electrical and Electronics Engineering, PSG College of Technology, Coimbatore, Tamil Nadu India
| | - Ponarun Ramamoorthi
- Department of Electrical and Electronics Engineering, Theni Kammavar Sangam College of Technology, Theni, Tamil Nadu India
| | | | - Gunasekaran Thangavel
- Department of Engineering, University of Technology and Applied Sciences, Muscat, Sultanate of Oman
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Gupta A, Mishra S, Sahu SC, Srinivasarao U, Naik KJ. Application of Convolutional Neural Networks for COVID-19 Detection in X-ray Images Using InceptionV3 and U-Net. NEW GENERATION COMPUTING 2023; 41:475-502. [PMID: 37229179 PMCID: PMC10173914 DOI: 10.1007/s00354-023-00217-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 04/25/2023] [Indexed: 05/27/2023]
Abstract
COVID-19 has expanded overall across the globe after its initial cases were discovered in December 2019 in Wuhan-China. Because the virus has impacted people's health worldwide, its fast identification is essential for preventing disease spread and reducing mortality rates. The reverse transcription polymerase chain reaction (RT-PCR) is the primary leading method for detecting COVID-19 disease; it has high costs and long turnaround times. Hence, quick and easy-to-use innovative diagnostic instruments are required. According to a new study, COVID-19 is linked to discoveries in chest X-ray pictures. The suggested approach includes a stage of pre-processing with lung segmentation, removing the surroundings that do not provide information pertinent to the task and may result in biased results. The InceptionV3 and U-Net deep learning models used in this work process the X-ray photo and classifies them as COVID-19 negative or positive. The CNN model that uses a transfer learning approach was trained. Finally, the findings are analyzed and interpreted through different examples. The obtained COVID-19 detection accuracy is around 99% for the best models.
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Affiliation(s)
- Aman Gupta
- Department of Computer Science and Engineering, National Institute of Technology Raipur, Raipur , Chhattisgarh India
| | - Shashank Mishra
- Department of Computer Science and Engineering, National Institute of Technology Raipur, Raipur , Chhattisgarh India
| | - Sourav Chandan Sahu
- Department of Computer Science and Engineering, National Institute of Technology Raipur, Raipur , Chhattisgarh India
| | - Ulligaddala Srinivasarao
- Department of Computer Science and Engineering, National Institute of Technology Raipur, Raipur , Chhattisgarh India
| | - K. Jairam Naik
- Department of Computer Science and Engineering, National Institute of Technology Raipur, Raipur , Chhattisgarh India
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Challenges, opportunities, and advances related to COVID-19 classification based on deep learning. DATA SCIENCE AND MANAGEMENT 2023. [PMCID: PMC10063459 DOI: 10.1016/j.dsm.2023.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
Abstract
The novel coronavirus disease, or COVID-19, is a hazardous disease. It is endangering the lives of many people living in more than two hundred countries. It directly affects the lungs. In general, two main imaging modalities: - computed tomography (CT) and chest x-ray (CXR) are used to achieve a speedy and reliable medical diagnosis. Identifying the coronavirus in medical images is exceedingly difficult for diagnosis, assessment, and treatment. It is demanding, time-consuming, and subject to human mistakes. In biological disciplines, excellent performance can be achieved by employing artificial intelligence (AI) models. As a subfield of AI, deep learning (DL) networks have drawn considerable attention than standard machine learning (ML) methods. DL models automatically carry out all the steps of feature extraction, feature selection, and classification. This study has performed comprehensive analysis of coronavirus classification using CXR and CT imaging modalities using DL architectures. Additionally, we have discussed how transfer learning is helpful in this regard. Finally, the problem of designing and implementing a system using computer-aided diagnostic (CAD) to find COVID-19 using DL approaches is highlighted a future research possibility.
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Bhosale YH, Patnaik KS. Bio-medical imaging (X-ray, CT, ultrasound, ECG), genome sequences applications of deep neural network and machine learning in diagnosis, detection, classification, and segmentation of COVID-19: a Meta-analysis & systematic review. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-54. [PMID: 37362676 PMCID: PMC10015538 DOI: 10.1007/s11042-023-15029-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 02/01/2023] [Accepted: 02/27/2023] [Indexed: 06/28/2023]
Abstract
This review investigates how Deep Machine Learning (DML) has dealt with the Covid-19 epidemic and provides recommendations for future Covid-19 research. Despite the fact that vaccines for this epidemic have been developed, DL methods have proven to be a valuable asset in radiologists' arsenals for the automated assessment of Covid-19. This detailed review debates the techniques and applications developed for Covid-19 findings using DL systems. It also provides insights into notable datasets used to train neural networks, data partitioning, and various performance measurement metrics. The PRISMA taxonomy has been formed based on pretrained(45 systems) and hybrid/custom(17 systems) models with radiography modalities. A total of 62 systems with respect to X-ray(32), CT(19), ultrasound(7), ECG(2), and genome sequence(2) based modalities as taxonomy are selected from the studied articles. We originate by valuing the present phase of DL and conclude with significant limitations. The restrictions contain incomprehensibility, simplification measures, learning from incomplete labeled data, and data secrecy. Moreover, DML can be utilized to detect and classify Covid-19 from other COPD illnesses. The proposed literature review has found many DL-based systems to fight against Covid19. We expect this article will assist in speeding up the procedure of DL for Covid-19 researchers, including medical, radiology technicians, and data engineers.
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Affiliation(s)
- Yogesh H. Bhosale
- Computer Science and Engineering Department, Birla Institute of Technology, Mesra, Ranchi, India
| | - K. Sridhar Patnaik
- Computer Science and Engineering Department, Birla Institute of Technology, Mesra, Ranchi, India
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13
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Arias-Garzón D, Tabares-Soto R, Bernal-Salcedo J, Ruz GA. Biases associated with database structure for COVID-19 detection in X-ray images. Sci Rep 2023; 13:3477. [PMID: 36859430 PMCID: PMC9975856 DOI: 10.1038/s41598-023-30174-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 02/17/2023] [Indexed: 03/03/2023] Open
Abstract
Several artificial intelligence algorithms have been developed for COVID-19-related topics. One that has been common is the COVID-19 diagnosis using chest X-rays, where the eagerness to obtain early results has triggered the construction of a series of datasets where bias management has not been thorough from the point of view of patient information, capture conditions, class imbalance, and careless mixtures of multiple datasets. This paper analyses 19 datasets of COVID-19 chest X-ray images, identifying potential biases. Moreover, computational experiments were conducted using one of the most popular datasets in this domain, which obtains a 96.19% of classification accuracy on the complete dataset. Nevertheless, when evaluated with the ethical tool Aequitas, it fails on all the metrics. Ethical tools enhanced with some distribution and image quality considerations are the keys to developing or choosing a dataset with fewer bias issues. We aim to provide broad research on dataset problems, tools, and suggestions for future dataset developments and COVID-19 applications using chest X-ray images.
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Affiliation(s)
- Daniel Arias-Garzón
- grid.441739.c0000 0004 0486 2919Departamento de Electrónica y Automatización, Universidad Autónoma de Manizales, Manizales, 170001 Colombia
| | - Reinel Tabares-Soto
- grid.441739.c0000 0004 0486 2919Departamento de Electrónica y Automatización, Universidad Autónoma de Manizales, Manizales, 170001 Colombia ,grid.440617.00000 0001 2162 5606Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, 7941169 Santiago, Chile ,grid.7779.e0000 0001 2290 6370Departamento de Sistemas e Informática, Universidad de Caldas, Manizales, 170001 Colombia
| | - Joshua Bernal-Salcedo
- grid.441739.c0000 0004 0486 2919Departamento de Electrónica y Automatización, Universidad Autónoma de Manizales, Manizales, 170001 Colombia
| | - Gonzalo A. Ruz
- grid.440617.00000 0001 2162 5606Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, 7941169 Santiago, Chile ,grid.512276.5Center of Applied Ecology and Sustainability (CAPES), 8331150 Santiago, Chile ,Data Observatory Foundation, 7941169 Santiago, Chile
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14
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Gheisari M, Ebrahimzadeh F, Rahimi M, Moazzamigodarzi M, Liu Y, Dutta Pramanik PK, Heravi MA, Mehbodniya A, Ghaderzadeh M, Feylizadeh MR, Kosari S. Deep learning: Applications, architectures, models, tools, and frameworks: A comprehensive survey. CAAI TRANSACTIONS ON INTELLIGENCE TECHNOLOGY 2023. [DOI: 10.1049/cit2.12180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023] Open
Affiliation(s)
- Mehdi Gheisari
- School of Computer Science and Technology Harbin Institute of Technology (Shenzhen) Shenzhen China
- Department of Cognitive Computing, Institute of Computer Science and Engineering, Saveetha School of Engineering Saveetha Institute of Medical and Technical Sciences Chennai India
- Department of Computer Science Islamic Azad University Tehran Iran
| | | | - Mohamadtaghi Rahimi
- Department of Mathematics and Statistics Iran University of Science and Technology Tehran Iran
| | | | - Yang Liu
- School of Computer Science and Technology Harbin Institute of Technology (Shenzhen) Shenzhen China
- Peng Cheng Laboratory Shenzhen China
| | | | | | - Abolfazl Mehbodniya
- Department of Electronics and Communications Engineering Kuwait College of Science and Technology Doha District Kuwait
| | - Mustafa Ghaderzadeh
- Department of Artificial Intelligence Smart University of Medical Sciences Tehran Iran
| | | | - Saeed Kosari
- Institute of Computing Science and Technology, Guangzhou University Guangzhou China
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15
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Modak S, Abdel-Raheem E, Rueda L. Applications of Deep Learning in Disease Diagnosis of Chest Radiographs: A Survey on Materials and Methods. BIOMEDICAL ENGINEERING ADVANCES 2023. [DOI: 10.1016/j.bea.2023.100076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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16
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Pal S, Singha P. Linking river flow modification with wetland hydrological instability, habitat condition, and ecological responses. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:11634-11660. [PMID: 36098917 DOI: 10.1007/s11356-022-22761-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Accepted: 08/24/2022] [Indexed: 06/15/2023]
Abstract
Flow modification pursuing dams is widely found. Some works also focused on its impact on floodplain wetland hydrology. However, how this change can pose an impact on habitat conditions, ecological conditions, and trophic state is also a matter of investigation. The very least attention has been paid to this so far. Therefore, the present study focused on these, taking the dam-induced Lower Tangon river basin of India and Bangladesh as a case. The degree of flow alteration in the river was presented in a heat map. Multi-parametric machine learning (ML) approaches were applied to model hydrological instability and habitat condition. The ecological consequences like evaluating eco-deficit using flow duration curve (FDC) approach, trophic state using trophic state index (TSI), fish habitat zone using image-based hydrological parameters, etc. were measured. The study exhibited that after damming, the degree of river flow modification was about 41%. Consequently, the wetland hydrological instability and habitat conditions were degraded. In the post-dam period, > 50% of wetland area was lost, and hydrological instability was enhanced considerably over wider parts of the wetland. Habitat conditions of the existing wetland also witnessed fragility (poor and very poor areas increased by about 22.23 and 9.34%). As a result of this, adverse ecological responses were found. For instance, the eco-deficit area was increased by 36.19%, a good proportion (100%) of wetlands was witnessed the transformation of TSI from oligotrophic to mesotrophic state, and optimum fish habitat area was declined. The ecological strength map integrating all the cause-effect model parameters showed that good ecological strength was reduced from 49 to 2% in the post-dam. The result of the study would be very useful for wetland restoration for ecological and human well-being.
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Affiliation(s)
- Swades Pal
- Department of Geography, University of Gour Banga, Malda, India
| | - Pankaj Singha
- Department of Geography, University of Gour Banga, Malda, India.
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17
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Marefat A, Marefat M, Hassannataj Joloudari J, Nematollahi MA, Lashgari R. CCTCOVID: COVID-19 detection from chest X-ray images using Compact Convolutional Transformers. Front Public Health 2023; 11:1025746. [PMID: 36923036 PMCID: PMC10009152 DOI: 10.3389/fpubh.2023.1025746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Accepted: 02/07/2023] [Indexed: 03/03/2023] Open
Abstract
COVID-19 is a novel virus that attacks the upper respiratory tract and the lungs. Its person-to-person transmissibility is considerably rapid and this has caused serious problems in approximately every facet of individuals' lives. While some infected individuals may remain completely asymptomatic, others have been frequently witnessed to have mild to severe symptoms. In addition to this, thousands of death cases around the globe indicated that detecting COVID-19 is an urgent demand in the communities. Practically, this is prominently done with the help of screening medical images such as Computed Tomography (CT) and X-ray images. However, the cumbersome clinical procedures and a large number of daily cases have imposed great challenges on medical practitioners. Deep Learning-based approaches have demonstrated a profound potential in a wide range of medical tasks. As a result, we introduce a transformer-based method for automatically detecting COVID-19 from X-ray images using Compact Convolutional Transformers (CCT). Our extensive experiments prove the efficacy of the proposed method with an accuracy of 99.22% which outperforms the previous works.
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Affiliation(s)
- Abdolreza Marefat
- Department of Computer Engineering, South Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Mahdieh Marefat
- Department of Cellular and Molecular Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | | | | | - Reza Lashgari
- Institute of Medical Science and Technology, Shahid Beheshti University, Tehran, Iran
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18
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Gülmez B. A novel deep neural network model based Xception and genetic algorithm for detection of COVID-19 from X-ray images. ANNALS OF OPERATIONS RESEARCH 2022; 328:1-25. [PMID: 36591406 PMCID: PMC9790088 DOI: 10.1007/s10479-022-05151-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 12/14/2022] [Indexed: 06/17/2023]
Abstract
The coronavirus first appeared in China in 2019, and the World Health Organization (WHO) named it COVID-19. Then WHO announced this illness as a worldwide pandemic in March 2020. The number of cases, infections, and fatalities varied considerably worldwide. Because the main characteristic of COVID-19 is its rapid spread, doctors and specialists generally use PCR tests to detect the COVID-19 virus. As an alternative to PCR, X-ray images can help diagnose illness using artificial intelligence (AI). In medicine, AI is commonly employed. Convolutional neural networks (CNN) and deep learning models make it simple to extract information from images. Several options exist when creating a deep CNN. The possibilities include network depth, layer count, layer type, and parameters. In this paper, a novel Xception-based neural network is discovered using the genetic algorithm (GA). GA finds better alternative networks and parameters during iterations. The best network discovered with GA is tested on a COVID-19 X-ray image dataset. The results are compared with other networks and the results of papers in the literature. The novel network of this paper gives more successful results. The accuracy results are 0.996, 0.989, and 0.924 for two-class, three-class, and four-class datasets, respectively.
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Affiliation(s)
- Burak Gülmez
- Department of Industrial Engineering, Erciyes University, Kayseri, Türkiye
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19
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Preliminary Stages for COVID-19 Detection Using Image Processing. Diagnostics (Basel) 2022; 12:diagnostics12123171. [PMID: 36553177 PMCID: PMC9777505 DOI: 10.3390/diagnostics12123171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 11/30/2022] [Accepted: 12/08/2022] [Indexed: 12/23/2022] Open
Abstract
COVID-19 was first discovered in December 2019 in Wuhan. There have been reports of thousands of illnesses and hundreds of deaths in almost every region of the world. Medical images, when combined with cutting-edge technology such as artificial intelligence, have the potential to improve the efficiency of the public health system and deliver faster and more reliable findings in the detection of COVID-19. The process of developing the COVID-19 diagnostic system begins with image accusation and proceeds via preprocessing, feature extraction, and classification. According to literature review, several attempts to develop taxonomies for COVID-19 detection using image processing methods have been introduced. However, most of these adhere to a standard category that exclusively considers classification methods. Therefore, in this study a new taxonomy for the early stages of COVID-19 detection is proposed. It attempts to offer a full grasp of image processing in COVID-19 while considering all phases required prior to classification. The survey concludes with a discussion of outstanding concerns and future directions.
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20
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Lasker A, Obaidullah SM, Chakraborty C, Roy K. Application of Machine Learning and Deep Learning Techniques for COVID-19 Screening Using Radiological Imaging: A Comprehensive Review. SN COMPUTER SCIENCE 2022; 4:65. [PMID: 36467853 PMCID: PMC9702883 DOI: 10.1007/s42979-022-01464-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 10/18/2022] [Indexed: 11/26/2022]
Abstract
Lung, being one of the most important organs in human body, is often affected by various SARS diseases, among which COVID-19 has been found to be the most fatal disease in recent times. In fact, SARS-COVID 19 led to pandemic that spreads fast among the community causing respiratory problems. Under such situation, radiological imaging-based screening [mostly chest X-ray and computer tomography (CT) modalities] has been performed for rapid screening of the disease as it is a non-invasive approach. Due to scarcity of physician/chest specialist/expert doctors, technology-enabled disease screening techniques have been developed by several researchers with the help of artificial intelligence and machine learning (AI/ML). It can be remarkably observed that the researchers have introduced several AI/ML/DL (deep learning) algorithms for computer-assisted detection of COVID-19 using chest X-ray and CT images. In this paper, a comprehensive review has been conducted to summarize the works related to applications of AI/ML/DL for diagnostic prediction of COVID-19, mainly using X-ray and CT images. Following the PRISMA guidelines, total 265 articles have been selected out of 1715 published articles till the third quarter of 2021. Furthermore, this review summarizes and compares varieties of ML/DL techniques, various datasets, and their results using X-ray and CT imaging. A detailed discussion has been made on the novelty of the published works, along with advantages and limitations.
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Affiliation(s)
- Asifuzzaman Lasker
- Department of Computer Science & Engineering, Aliah University, Kolkata, India
| | - Sk Md Obaidullah
- Department of Computer Science & Engineering, Aliah University, Kolkata, India
| | - Chandan Chakraborty
- Department of Computer Science & Engineering, National Institute of Technical Teachers’ Training & Research Kolkata, Kolkata, India
| | - Kaushik Roy
- Department of Computer Science, West Bengal State University, Barasat, India
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21
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Ubale Kiru M, Belaton B, Chew X, Almotairi KH, Hussein AM, Aminu M. Comparative analysis of some selected generative adversarial network models for image augmentation: a case study of COVID-19 x-ray and CT images. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2022. [DOI: 10.3233/jifs-220017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
One of the fastest-growing fields in today’s world is data analytics. Data analytics paved the way for a significant number of research and development in various fields including medicine and vaccine development, DNA analysis, artificial intelligence and many more. Data plays a very important role in providing the required results and helps in making critical decisions and predictions. However, ethical and legislative restrictions sometimes make it difficult for scientists to acquire data. For example, during the COVID-19 pandemic, data was very limited due to privacy and regulatory issues. To address data unavailability, data scientists usually leverage machine learning algorithms such as Generative Adversarial Networks (GAN) to augment data from existing samples. Today, there are over 450 algorithms that are designed to re-generate or augment data in case of unavailability of the data. With many algorithms in the market, it is practically impossible to predict which algorithm best fits the problem in question, unless many algorithms are tested. In this study, we select the most common types of GAN algorithms available for image augmentation to generate samples capable of representing a whole data distribution. To test the selected models, we used two unique datasets, namely COVID-19 CT images and COVID-19 X-Ray images. Five different GAN algorithms, namely CGAN, DCGAN, f-GAN, WGAN, and CycleGAN, were selected and applied to the samples to see how each algorithm reacts to the samples. To evaluate their performances, Visual Turing Test (VTT) and Fréchet Inception Distance (FID) were used. The VTT result shows that a human expert can accurately distinguish between different samples that were produced. Hence, CycleGAN scored 80% in CT image dataset and 77% in X-Ray image dataset. In contrast, the FID result revealed that CycleGAN had a high convergence and therefore generated high quality and clearer images on both datasets compared to CGAN, DCGAN, f-GAN, and WGAN. This study concluded that the CycleGAN model is the best when it comes to image augmentation due to its friendliness and high convergence.
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Affiliation(s)
- Muhammad Ubale Kiru
- School of Computer Science, Universiti Sains Malaysia, Gelugor, Penang, Malaysia
| | - Bahari Belaton
- School of Computer Science, Universiti Sains Malaysia, Gelugor, Penang, Malaysia
| | - Xinying Chew
- School of Computer Science, Universiti Sains Malaysia, Gelugor, Penang, Malaysia
| | - Khaled H. Almotairi
- Computer Engineering Department, Computer and Information System College, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Ahmad MohdAziz Hussein
- Deanship of E-Learning and Distance Education, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Maryam Aminu
- Faculty of Life Science, Ahmadu Bello University, Zaria-Nigeria
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22
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Er MB. COVID-19 detection based on pre-trained deep networks and LSTM model using X-ray images enhanced contrast with artificial bee colony algorithm. EXPERT SYSTEMS 2022; 40:e13185. [PMID: 36718212 PMCID: PMC9878115 DOI: 10.1111/exsy.13185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 09/14/2022] [Accepted: 10/20/2022] [Indexed: 06/18/2023]
Abstract
Coronavirus (COVID-19) is an infectious disease that has spread across the world within a short period of time and is causing rapid casualties. The main symptoms of this virus are shortness of breath, fever, cough, and a sore throat. The virus is detected through samples, such as throat swabs and sputum, taken from people who meet the possible case definition and the results are usually obtained within a few hours or a day. The development of test kits to detect the COVID-19 virus is still an open research topic, and automated and faster diagnostic tools are needed. Recent studies have shown that biomedical images can be used for COVID-19 testing. This study proposes the hybrid use of pre-trained deep networks and the long short-term memory (LSTM) for the classification of COVID-19 from contrast-enhanced chest X-rays. In the proposed system, a transformation function is applied to X-ray images first. Then, the artificial bee colony (ABC) algorithm is used to optimize the parameters obtained from the transformation function. The pre-trained deep network models and LSTM are preferred to extract features from the contrast-enhanced chest X-rays. At the final stage, COVID-19, normal (healthy), and pneumonia chest X-ray are classified using softmax. To evaluate the performance of the proposed method, the "COVID-19 radiography" dataset, which is widely used in the literature, is preferred. From the proposed model, 98.97% accuracy, 98.80% precision, and 98.70% sensitivity rates are obtained. Experimental results reveal that the proposed model provides efficient results compared to other methods. Thanks to the application of ABC-based image enhancement, increased classification of 2.5% has been achieved against other state-of-the-art models.
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Affiliation(s)
- Mehmet Bilal Er
- Department of Computer Engineering, Faculty of EngineeringHarran UniversityŞanlıurfaTurkey
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23
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T N SG, Satish R, Sridhar R. Learning effective embedding for automated COVID-19 prediction from chest X-ray images. MULTIMEDIA SYSTEMS 2022; 29:739-751. [PMID: 36310764 PMCID: PMC9596346 DOI: 10.1007/s00530-022-01015-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
The pandemic that the SARS-CoV-2 originated in 2019 is continuing to cause serious havoc on the global population's health, economy, and livelihood. A critical way to suppress and restrain this pandemic is the early detection of COVID-19, which will help to control the virus. Chest X-rays are one of the more straightforward ways to detect the COVID-19 virus compared to the standard methods like CT scans and RT-PCR diagnosis, which are very complex, expensive, and take much time. Our research on various papers shows that the currently researchers are actively working for an efficient Deep Learning model to produce an unbiased detection of COVID-19 through chest X-ray images. In this work, we propose a novel convolution neural network model based on supervised classification that simultaneously computes identification and verification loss. We adopt a transfer learning approach using pretrained models trained on imagenet dataset such as Alex Net and VGG16 as back-bone models and use data augmentation techniques to solve class imbalance and boost the classifier's performance. Finally, our proposed classifier architecture model ensures unbiased and high accuracy results, outperforming existing deep learning models for COVID-19 detection from chest X-ray images producing State of the Art performance. It shows strong and robust performance and proves to be easily deployable and scalable, therefore increasing the efficiency of analyzing chest X-ray images with high accuracy in detection of Coronavirus.
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Affiliation(s)
- Sree Ganesh T N
- Department of Computer Science and Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - Rishi Satish
- Department of Computer Science and Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
| | - Rajeswari Sridhar
- Department of Computer Science and Engineering, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015 India
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24
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Fast COVID-19 Detection from Chest X-Ray Images Using DCT Compression. APPLIED COMPUTATIONAL INTELLIGENCE AND SOFT COMPUTING 2022. [DOI: 10.1155/2022/2656818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Novel coronavirus (COVID-19) is a new strain of coronavirus, first identified in a cluster with pneumonia symptoms caused by SARS-CoV-2 virus. It is fast spreading all over the world. Most infected people will develop mild to moderate illness and recover without hospitalization. Currently, real-time quantitative reverse transcription-PCR (rqRT-PCR) is popular for coronavirus detection due to its high specificity, simple quantitative analysis, and higher sensitivity than conventional RT-PCR. Antigen tests are also commonly used. It is very essential for the automatic detection of COVID-19 from publicly available resources. Chest X-ray (CXR) images are used for the classification of COVID-19, normal, and viral pneumonia cases. The CXR images are divided into sub-blocks for finding out the discrete cosine transform (DCT) for every sub-block in this proposed method. In order to produce a compressed version for each CXR image, the DCT energy compaction capability is used. For each image, hardly few spectral DCT components are included as features. The dimension of the final feature vectors is reduced by scanning the compressed images using average pooling windows. In the 3-set classification, a multilayer artificial neural network is used. It is essential to triage non-COVID-19 patients with pneumonia to give out hospital resources efficiently. Higher size feature vectors are used for designing binary classification for COVID-19 and pneumonia. The proposed method achieved an average accuracy of 95% and 94% for the 3-set classification and binary classification, respectively. The proposed method achieves better accuracy than that of the recent state-of-the-art techniques. Also, the time required for the implementation is less.
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25
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Ayadi M, Ksibi A, Al-Rasheed A, Soufiene BO. COVID-AleXception: A Deep Learning Model Based on a Deep Feature Concatenation Approach for the Detection of COVID-19 from Chest X-ray Images. Healthcare (Basel) 2022; 10:healthcare10102072. [PMID: 36292519 PMCID: PMC9601977 DOI: 10.3390/healthcare10102072] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 10/10/2022] [Accepted: 10/16/2022] [Indexed: 12/21/2022] Open
Abstract
The novel coronavirus 2019 (COVID-19) spread rapidly around the world and its outbreak has become a pandemic. Due to an increase in afflicted cases, the quantity of COVID-19 tests kits available in hospitals has decreased. Therefore, an autonomous detection system is an essential tool for reducing infection risks and spreading of the virus. In the literature, various models based on machine learning (ML) and deep learning (DL) are introduced to detect many pneumonias using chest X-ray images. The cornerstone in this paper is the use of pretrained deep learning CNN architectures to construct an automated system for COVID-19 detection and diagnosis. In this work, we used the deep feature concatenation (DFC) mechanism to combine features extracted from input images using the two modern pre-trained CNN models, AlexNet and Xception. Hence, we propose COVID-AleXception: a neural network that is a concatenation of the AlexNet and Xception models for the overall improvement of the prediction capability of this pandemic. To evaluate the proposed model and build a dataset of large-scale X-ray images, there was a careful selection of multiple X-ray images from several sources. The COVID-AleXception model can achieve a classification accuracy of 98.68%, which shows the superiority of the proposed model over AlexNet and Xception that achieved a classification accuracy of 94.86% and 95.63%, respectively. The performance results of this proposed model demonstrate its pertinence to help radiologists diagnose COVID-19 more quickly.
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Affiliation(s)
- Manel Ayadi
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Amel Ksibi
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
- Correspondence:
| | - Amal Al-Rasheed
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Ben Othman Soufiene
- Prince Laboratory Research, ISITcom (Institut Supérieur d’Informatique et des Techniques de Communication de Hammam Sousse), University of Sousse, Hammam Sousse 4023, Tunisia
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26
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El-Dahshan ESA, Bassiouni MM, Hagag A, Chakrabortty RK, Loh H, Acharya UR. RESCOVIDTCNnet: A residual neural network-based framework for COVID-19 detection using TCN and EWT with chest X-ray images. EXPERT SYSTEMS WITH APPLICATIONS 2022; 204:117410. [PMID: 35502163 PMCID: PMC9045872 DOI: 10.1016/j.eswa.2022.117410] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 04/07/2022] [Accepted: 04/25/2022] [Indexed: 06/14/2023]
Abstract
Since the advent of COVID-19, the number of deaths has increased exponentially, boosting the requirement for various research studies that may correctly diagnose the illness at an early stage. Using chest X-rays, this study presents deep learning-based algorithms for classifying patients with COVID illness, healthy controls, and pneumonia classes. Data gathering, pre-processing, feature extraction, and classification are the four primary aspects of the approach. The pictures of chest X-rays utilized in this investigation came from various publicly available databases. The pictures were filtered to increase image quality in the pre-processing stage, and the chest X-ray images were de-noised using the empirical wavelet transform (EWT). Following that, four deep learning models were used to extract features. The first two models, Inception-V3 and Resnet-50, are based on transfer learning models. The Resnet-50 is combined with a temporal convolutional neural network (TCN) to create the third model. The fourth model is our suggested RESCOVIDTCNNet model, which integrates EWT, Resnet-50, and TCN. Finally, an artificial neural network (ANN) and a support vector machine were used to classify the data (SVM). Using five-fold cross-validation for 3-class classification, our suggested RESCOVIDTCNNet achieved a 99.5 percent accuracy. Our prototype can be utilized in developing nations where radiologists are in low supply to acquire a diagnosis quickly.
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Affiliation(s)
- El-Sayed A El-Dahshan
- Department of Physics, Faculty of Science, Ain Shams University, Postal Code: 11566, Cairo, Egypt
- Egyptian E-Learning University (EELU), 33 El-messah Street, Eldoki, Postal Code: 11261, El-Giza, Egypt
| | - Mahmoud M Bassiouni
- Egyptian E-Learning University (EELU), 33 El-messah Street, Eldoki, Postal Code: 11261, El-Giza, Egypt
| | - Ahmed Hagag
- Department of Scientific Computing, Faculty of Computers and Artificial Intelligence, Benha University, Benha 13518, Egypt
| | - Ripon K Chakrabortty
- School of Engineering and IT, UNSW Canberra at ADFA, Canberra, ACT 2612, Australia
| | - Huiwen Loh
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore
| | - U Rajendra Acharya
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, 599489, Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
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27
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Bacanin N, Budimirovic N, K. V, Strumberger I, Alrasheedi AF, Abouhawwash M. Novel chaotic oppositional fruit fly optimization algorithm for feature selection applied on COVID 19 patients' health prediction. PLoS One 2022; 17:e0275727. [PMID: 36215218 PMCID: PMC9550095 DOI: 10.1371/journal.pone.0275727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 09/22/2022] [Indexed: 11/05/2022] Open
Abstract
The fast-growing quantity of information hinders the process of machine learning, making it computationally costly and with substandard results. Feature selection is a pre-processing method for obtaining the optimal subset of features in a data set. Optimization algorithms struggle to decrease the dimensionality while retaining accuracy in high-dimensional data set. This article proposes a novel chaotic opposition fruit fly optimization algorithm, an improved variation of the original fruit fly algorithm, advanced and adapted for binary optimization problems. The proposed algorithm is tested on ten unconstrained benchmark functions and evaluated on twenty-one standard datasets taken from the Univesity of California, Irvine repository and Arizona State University. Further, the presented algorithm is assessed on a coronavirus disease dataset, as well. The proposed method is then compared with several well-known feature selection algorithms on the same datasets. The results prove that the presented algorithm predominantly outperform other algorithms in selecting the most relevant features by decreasing the number of utilized features and improving classification accuracy.
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Affiliation(s)
- Nebojsa Bacanin
- Faculty of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Nebojsa Budimirovic
- Faculty of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Venkatachalam K.
- Department of Applied Cybernetics,Faculty of Science, University of Hradec Kràlové, Hradec Kràalové, Czech Republic
- * E-mail:
| | - Ivana Strumberger
- Faculty of Informatics and Computing, Singidunum University, Belgrade, Serbia
| | - Adel Fahad Alrasheedi
- Department of Statistics and Operations Research, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed Abouhawwash
- Department of Mathematics, Faculty of Science, Mansoura University, Mansoura, Egypt
- Department of Computational Mathematics, Science and Engineering (CMSE), Michigan State University, East Lansing, MI, United States of America
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Saheb SK, Narayanan B, Rao TVN. ADL-CDF: A Deep Learning Framework for COVID-19 Detection from CT Scans Towards an Automated Clinical Decision Support System. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2022; 48:1-13. [PMID: 36212631 PMCID: PMC9531859 DOI: 10.1007/s13369-022-07271-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 09/06/2022] [Indexed: 11/29/2022]
Abstract
The emergence of deep learning has paved to solve many problems in the real world. COVID-19 pandemic, since the late 2019, has been affecting lives of people across the globe. Chest CT scan images are used to detect it and know its severity in patients. The problem with many existing solutions in COVID-19 detection using CT scan images is that inability to detect the infection when it is in initial stages. As the infection can exist on varied scales, there is need for more comprehensive approach that can ascertain the disease at all scales. Towards this end, we proposed a deep learning-based framework known as Automated Deep Learning-based COVID-19 Detection Framework (ADL-CDF). It does not need a human medical expert in diagnosis as it is capable of detecting automatically. The framework is assisted by two algorithms that involve image processing and deep learning. The first algorithm known as Region of Interest (ROI)-based Image Filtering (ROI-IF) which analyses given input CT scan images of a patient and discards the ones where ROI is missing. This algorithm minimizes time taken for processing besides reducing false positive rate. The second algorithm is known as Multi-Scale Feature Selection algorithm that fits into the deep learning framework's pipeline to leverage detection performance of the ADL-CDF. The proposed framework is evaluated against ResNet50V2 and Xception. Our empirical study revealed that our model outperforms the state of the art.
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Affiliation(s)
- Shaik Khasim Saheb
- Department of CSE, Annamalai University, Annamalainagar, Chidambaram, Tamil Nadu India
- Department of Computer Science and Engineering, Sreenidhi Institute of Science and Technology, Yamnampet, Ghatkesar, Hyderabad, Telangana India
| | - B. Narayanan
- Department of CSE, Annamalai University, Annamalainagar, Chidambaram, Tamil Nadu India
| | - Thota Venkat Narayana Rao
- Department of Computer Science and Engineering, Sreenidhi Institute of Science and Technology, Yamnampet, Ghatkesar, Hyderabad, Telangana India
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Karthik R, Menaka R, Hariharan M, Kathiresan GS. AI for COVID-19 Detection from Radiographs: Incisive Analysis of State of the Art Techniques, Key Challenges and Future Directions. Ing Rech Biomed 2022; 43:486-510. [PMID: 34336141 PMCID: PMC8312058 DOI: 10.1016/j.irbm.2021.07.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 06/14/2021] [Accepted: 07/19/2021] [Indexed: 12/24/2022]
Abstract
Background and objective In recent years, Artificial Intelligence has had an evident impact on the way research addresses challenges in different domains. It has proven to be a huge asset, especially in the medical field, allowing for time-efficient and reliable solutions. This research aims to spotlight the impact of deep learning and machine learning models in the detection of COVID-19 from medical images. This is achieved by conducting a review of the state-of-the-art approaches proposed by the recent works in this field. Methods The main focus of this study is the recent developments of classification and segmentation approaches to image-based COVID-19 detection. The study reviews 140 research papers published in different academic research databases. These papers have been screened and filtered based on specified criteria, to acquire insights prudent to image-based COVID-19 detection. Results The methods discussed in this review include different types of imaging modality, predominantly X-rays and CT scans. These modalities are used for classification and segmentation tasks as well. This review seeks to categorize and discuss the different deep learning and machine learning architectures employed for these tasks, based on the imaging modality utilized. It also hints at other possible deep learning and machine learning architectures that can be proposed for better results towards COVID-19 detection. Along with that, a detailed overview of the emerging trends and breakthroughs in Artificial Intelligence-based COVID-19 detection has been discussed as well. Conclusion This work concludes by stipulating the technical and non-technical challenges faced by researchers and illustrates the advantages of image-based COVID-19 detection with Artificial Intelligence techniques.
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Affiliation(s)
- R Karthik
- Centre for Cyber Physical Systems, Vellore Institute of Technology, Chennai, India
| | - R Menaka
- Centre for Cyber Physical Systems, Vellore Institute of Technology, Chennai, India
| | - M Hariharan
- School of Computing Sciences and Engineering, Vellore Institute of Technology, Chennai, India
| | - G S Kathiresan
- School of Electronics Engineering, Vellore Institute of Technology, Chennai, India
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Costa YMG, Silva SA, Teixeira LO, Pereira RM, Bertolini D, Britto AS, Oliveira LS, Cavalcanti GDC. COVID-19 Detection on Chest X-ray and CT Scan: A Review of the Top-100 Most Cited Papers. SENSORS (BASEL, SWITZERLAND) 2022; 22:7303. [PMID: 36236402 PMCID: PMC9570662 DOI: 10.3390/s22197303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/13/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
Since the beginning of the COVID-19 pandemic, many works have been published proposing solutions to the problems that arose in this scenario. In this vein, one of the topics that attracted the most attention is the development of computer-based strategies to detect COVID-19 from thoracic medical imaging, such as chest X-ray (CXR) and computerized tomography scan (CT scan). By searching for works already published on this theme, we can easily find thousands of them. This is partly explained by the fact that the most severe worldwide pandemic emerged amid the technological advances recently achieved, and also considering the technical facilities to deal with the large amount of data produced in this context. Even though several of these works describe important advances, we cannot overlook the fact that others only use well-known methods and techniques without a more relevant and critical contribution. Hence, differentiating the works with the most relevant contributions is not a trivial task. The number of citations obtained by a paper is probably the most straightforward and intuitive way to verify its impact on the research community. Aiming to help researchers in this scenario, we present a review of the top-100 most cited papers in this field of investigation according to the Google Scholar search engine. We evaluate the distribution of the top-100 papers taking into account some important aspects, such as the type of medical imaging explored, learning settings, segmentation strategy, explainable artificial intelligence (XAI), and finally, the dataset and code availability.
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Affiliation(s)
- Yandre M. G. Costa
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | - Sergio A. Silva
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | - Lucas O. Teixeira
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | | | - Diego Bertolini
- Departamento Acadêmico de Ciência da Computação, Universidade Tecnológica Federal do Paraná, Campo Mourão 87301-899, Brazil
| | - Alceu S. Britto
- Departmento de Ciência da Computação, Pontifícia Universidade Católica do Paraná, Curitiba 80215-901, Brazil
| | - Luiz S. Oliveira
- Departamento de Informática, Universidade Federal do Paraná, Curitiba 81531-980, Brazil
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Muzoğlu N, Halefoğlu AM, Avci MO, Kaya Karaaslan M, Yarman BSB. Detection of COVID-19 and its pulmonary stage using Bayesian hyperparameter optimization and deep feature selection methods. EXPERT SYSTEMS 2022; 40:e13141. [PMID: 36245832 PMCID: PMC9537791 DOI: 10.1111/exsy.13141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 07/25/2022] [Accepted: 09/05/2022] [Indexed: 06/16/2023]
Abstract
Since the first case of COVID-19 was reported in December 2019, many studies have been carried out on artificial intelligence for the rapid diagnosis of the disease to support health services. Therefore, in this study, we present a powerful approach to detect COVID-19 and COVID-19 findings from computed tomography images using pre-trained models using two different datasets. COVID-19, influenza A (H1N1) pneumonia, bacterial pneumonia and healthy lung image classes were used in the first dataset. Consolidation, crazy-paving pattern, ground-glass opacity, ground-glass opacity and consolidation, ground-glass opacity and nodule classes were used in the second dataset. The study consists of four steps. In the first two steps, distinctive features were extracted from the final layers of the pre-trained ShuffleNet, GoogLeNet and MobileNetV2 models trained with the datasets. In the next steps, the most relevant features were selected from the models using the Sine-Cosine optimization algorithm. Then, the hyperparameters of the Support Vector Machines were optimized with the Bayesian optimization algorithm and used to reclassify the feature subset that achieved the highest accuracy in the third step. The overall accuracy obtained for the first and second datasets is 99.46% and 99.82%, respectively. Finally, the performance of the results visualized with Occlusion Sensitivity Maps was compared with Gradient-weighted class activation mapping. The approach proposed in this paper outperformed other methods in detecting COVID-19 from multiclass viral pneumonia. Moreover, detecting the stages of COVID-19 in the lungs was an innovative and successful approach.
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Affiliation(s)
- Nedim Muzoğlu
- Department of Biomedical Engineering, Faculty of EngineeringIstanbul University‐CerrahpasaIstanbulTurkey
| | - Ahmet Mesrur Halefoğlu
- Department of RadiologySisli Hamidiye Etfal Training and Research Hospital, Health Sciences UniversityIstanbulTurkey
| | - Muhammed Onur Avci
- Department of Biomedical Engineering, Faculty of EngineeringIstanbul University‐CerrahpasaIstanbulTurkey
| | - Melike Kaya Karaaslan
- Department of Biomedical SciencesFaculty of Engineering, Kocaeli UniversityKocaeliTurkey
| | - Bekir Sıddık Binboğa Yarman
- Department of Electrical‐Electronics Engineering, Faculty of EngineeringIstanbul University‐CerrahpasaIstanbulTurkey
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A Novel Lightweight Approach to COVID-19 Diagnostics Based on Chest X-ray Images. J Clin Med 2022; 11:jcm11195501. [PMID: 36233368 PMCID: PMC9571927 DOI: 10.3390/jcm11195501] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 09/03/2022] [Accepted: 09/15/2022] [Indexed: 11/22/2022] Open
Abstract
Background: This paper presents a novel lightweight approach based on machine learning methods supporting COVID-19 diagnostics based on X-ray images. The presented schema offers effective and quick diagnosis of COVID-19. Methods: Real data (X-ray images) from hospital patients were used in this study. All labels, namely those that were COVID-19 positive and negative, were confirmed by a PCR test. Feature extraction was performed using a convolutional neural network, and the subsequent classification of samples used Random Forest, XGBoost, LightGBM and CatBoost. Results: The LightGBM model was the most effective in classifying patients on the basis of features extracted from X-ray images, with an accuracy of 1.00, a precision of 1.00, a recall of 1.00 and an F1-score of 1.00. Conclusion: The proposed schema can potentially be used as a support for radiologists to improve the diagnostic process. The presented approach is efficient and fast. Moreover, it is not excessively complex computationally.
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Automatic Detection of Cases of COVID-19 Pneumonia from Chest X-ray Images and Deep Learning Approaches. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7451551. [PMID: 36188684 PMCID: PMC9522509 DOI: 10.1155/2022/7451551] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 07/07/2022] [Accepted: 07/28/2022] [Indexed: 01/10/2023]
Abstract
Machine learning has already been used as a resource for disease detection and health care as a complementary tool to help with various daily health challenges. The advancement of deep learning techniques and a large amount of data-enabled algorithms to outperform medical teams in certain imaging tasks, such as pneumonia detection, skin cancer classification, hemorrhage detection, and arrhythmia detection. Automated diagnostics, which are enabled by images extracted from patient examinations, allow for interesting experiments to be conducted. This research differs from the related studies that were investigated in the experiment. These works are capable of binary categorization into two categories. COVID-Net, for example, was able to identify a positive case of COVID-19 or a healthy person with 93.3% accuracy. Another example is CHeXNet, which has a 95% accuracy rate in detecting cases of pneumonia or a healthy state in a patient. Experiments revealed that the current study was more effective than the previous studies in detecting a greater number of categories and with a higher percentage of accuracy. The results obtained during the model's development were not only viable but also excellent, with an accuracy of nearly 96% when analyzing a chest X-ray with three possible diagnoses in the two experiments conducted.
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Venkataramana L, Prasad DVV, Saraswathi S, Mithumary CM, Karthikeyan R, Monika N. Classification of COVID-19 from tuberculosis and pneumonia using deep learning techniques. Med Biol Eng Comput 2022; 60:2681-2691. [PMID: 35834050 PMCID: PMC9281341 DOI: 10.1007/s11517-022-02632-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 07/05/2022] [Indexed: 12/02/2022]
Abstract
Deep learning provides the healthcare industry with the ability to analyse data at exceptional speeds without compromising on accuracy. These techniques are applicable to healthcare domain for accurate and timely prediction. Convolutional neural network is a class of deep learning methods which has become dominant in various computer vision tasks and is attracting interest across a variety of domains, including radiology. Lung diseases such as tuberculosis (TB), bacterial and viral pneumonias, and COVID-19 are not predicted accurately due to availability of very few samples for either of the lung diseases. The disease could be easily diagnosed using X-ray or CT scan images. But the number of images available for each of the disease is not as equally as other resulting in imbalance nature of input data. Conventional supervised machine learning methods do not achieve higher accuracy when trained using a lesser amount of COVID-19 data samples. Image data augmentation is a technique that can be used to artificially expand the size of a training dataset by creating modified versions of images in the dataset. Data augmentation helped reduce overfitting when training a deep neural network. The SMOTE (Synthetic Minority Oversampling Technique) algorithm is used for the purpose of balancing the classes. The novelty in this research work is to apply combined data augmentation and class balance techniques before classification of tuberculosis, pneumonia, and COVID-19. The classification accuracy obtained with the proposed multi-level classification after training the model is recorded as 97.4% for TB and pneumonia and 88% for bacterial, viral, and COVID-19 classifications. The proposed multi-level classification method produced is ~8 to ~10% improvement in classification accuracy when compared with the existing methods in this area of research. The results reveal the fact that the proposed system is scalable to growing medical data and classifies lung diseases and its sub-types in less time with higher accuracy.
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Affiliation(s)
- Lokeswari Venkataramana
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
| | - D. Venkata Vara Prasad
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
| | - S. Saraswathi
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
| | - C. M. Mithumary
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
| | - R. Karthikeyan
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
| | - N. Monika
- Department of CSE, Sri Sivasubramaniya Nadar College of Engineering, Kalavakkam, Chennai, India
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35
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A Novel Method for COVID-19 Detection Based on DCNNs and Hierarchical Structure. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:2484435. [PMID: 36092785 PMCID: PMC9453086 DOI: 10.1155/2022/2484435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 07/13/2022] [Accepted: 07/26/2022] [Indexed: 11/20/2022]
Abstract
The worldwide outbreak of the new coronavirus disease (COVID-19) has been declared a pandemic by the World Health Organization (WHO). It has a devastating impact on daily life, public health, and global economy. Due to the highly infectiousness, it is urgent to early screening of suspected cases quickly and accurately. Chest X-ray medical image, as a diagnostic basis for COVID-19, arouses attention from medical engineering. However, due to small lesion difference and lack of training data, the accuracy of detection model is insufficient. In this work, a transfer learning strategy is introduced to hierarchical structure to enhance high-level features of deep convolutional neural networks. The proposed framework consisting of asymmetric pretrained DCNNs with attention networks integrates various information into a wider architecture to learn more discriminative and complementary features. Furthermore, a novel cross-entropy loss function with a penalty term weakens misclassification. Extensive experiments are implemented on the COVID-19 dataset. Compared with the state-of-the-arts, the effectiveness and high performance of the proposed method are demonstrated.
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36
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Fakieh B, Ragab M. Automated COVID-19 Classification Using Heap-Based Optimization with the Deep Transfer Learning Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7508836. [PMID: 36045956 PMCID: PMC9423999 DOI: 10.1155/2022/7508836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 05/31/2022] [Accepted: 06/23/2022] [Indexed: 11/17/2022]
Abstract
The outbreak of the COVID-19 pandemic necessitates prompt identification of affected persons to restrict the spread of the COVID-19 epidemic. Radiological imaging such as computed tomography (CT) and chest X-rays (CXR) is considered an effective way to diagnose COVID-19. However, it needs an expert's knowledge and consumes more time. At the same time, artificial intelligence (AI) and medical images are discovered to be helpful in effectively assessing and providing treatment for COVID-19 infected patients. In particular, deep learning (DL) models act as a vital part of a high-performance classification model for COVID-19 recognition on CXR images. This study develops a heap-based optimization with the deep transfer learning model for detection and classification (HBODTL-DC) of COVID-19. The proposed HBODTL-DC system majorly focuses on the identification of COVID-19 on CXR images. To do so, the presented HBODTL-DC model initially exploits the Gabor filtering (GF) technique to enhance the image quality. In addition, the HBO algorithm with a neural architecture search network (NasNet) large model is employed for the extraction of feature vectors. Finally, Elman Neural Network (ENN) model gets the feature vectors as input and categorizes the CXR images into distinct classes. The experimental validation of the HBODTL-DC model takes place on the benchmark CXR image dataset from the Kaggle repository, and the outcomes are checked in numerous dimensions. The experimental outcomes stated the supremacy of the HBODTL-DC model over recent approaches with a maximum accuracy of 0.9992.
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Affiliation(s)
- Bahjat Fakieh
- Information Systems Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Mahmoud Ragab
- Information Technology Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Department of Mathematics, Faculty of Science, Al-Azhar University, Naser City 11884, Cairo, Egypt
- Centre for Artificial Intelligence in Precision Medicines, King Abdulaziz University, Jeddah 21589, Saudi Arabia
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Asif S, Wenhui Y, Amjad K, Jin H, Tao Y, Jinhai S. Detection of COVID-19 from chest X-ray images: Boosting the performance with convolutional neural network and transfer learning. EXPERT SYSTEMS 2022; 40:EXSY13099. [PMID: 35945966 PMCID: PMC9353436 DOI: 10.1111/exsy.13099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 05/26/2022] [Accepted: 06/30/2022] [Indexed: 05/27/2023]
Abstract
Coronavirus disease (COVID-19) is a pandemic that has caused thousands of casualties and impacts all over the world. Most countries are facing a shortage of COVID-19 test kits in hospitals due to the daily increase in the number of cases. Early detection of COVID-19 can protect people from severe infection. Unfortunately, COVID-19 can be misdiagnosed as pneumonia or other illness and can lead to patient death. Therefore, in order to avoid the spread of COVID-19 among the population, it is necessary to implement an automated early diagnostic system as a rapid alternative diagnostic system. Several researchers have done very well in detecting COVID-19; however, most of them have lower accuracy and overfitting issues that make early screening of COVID-19 difficult. Transfer learning is the most successful technique to solve this problem with higher accuracy. In this paper, we studied the feasibility of applying transfer learning and added our own classifier to automatically classify COVID-19 because transfer learning is very suitable for medical imaging due to the limited availability of data. In this work, we proposed a CNN model based on deep transfer learning technique using six different pre-trained architectures, including VGG16, DenseNet201, MobileNetV2, ResNet50, Xception, and EfficientNetB0. A total of 3886 chest X-rays (1200 cases of COVID-19, 1341 healthy and 1345 cases of viral pneumonia) were used to study the effectiveness of the proposed CNN model. A comparative analysis of the proposed CNN models using three classes of chest X-ray datasets was carried out in order to find the most suitable model. Experimental results show that the proposed CNN model based on VGG16 was able to accurately diagnose COVID-19 patients with 97.84% accuracy, 97.90% precision, 97.89% sensitivity, and 97.89% of F1-score. Evaluation of the test data shows that the proposed model produces the highest accuracy among CNNs and seems to be the most suitable choice for COVID-19 classification. We believe that in this pandemic situation, this model will support healthcare professionals in improving patient screening.
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Affiliation(s)
- Sohaib Asif
- Key Laboratory for Information Photonic Technology of Shaanxi Province and Key Laboratory for Physical Electronics and Devices of the Ministry of Education, School of Electronic Science and Engineering, Faculty of Electronic and Information EngineeringXi'an Jiaotong UniversityXi'anShaanxiChina
- School of Computer Science and EngineeringCentral South UniversityChangshaChina
| | - Yi Wenhui
- Key Laboratory for Information Photonic Technology of Shaanxi Province and Key Laboratory for Physical Electronics and Devices of the Ministry of Education, School of Electronic Science and Engineering, Faculty of Electronic and Information EngineeringXi'an Jiaotong UniversityXi'anShaanxiChina
| | - Kamran Amjad
- Key Laboratory for Information Photonic Technology of Shaanxi Province and Key Laboratory for Physical Electronics and Devices of the Ministry of Education, School of Electronic Science and Engineering, Faculty of Electronic and Information EngineeringXi'an Jiaotong UniversityXi'anShaanxiChina
| | - Hou Jin
- School of Basic Medical ScienceXi'an Medical UniversityXi'anChina
| | - Yi Tao
- School of Computer Science and EngineeringXi'an Jiaotong UniversityXi'anChina
| | - Si Jinhai
- Key Laboratory for Information Photonic Technology of Shaanxi Province and Key Laboratory for Physical Electronics and Devices of the Ministry of Education, School of Electronic Science and Engineering, Faculty of Electronic and Information EngineeringXi'an Jiaotong UniversityXi'anShaanxiChina
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Sasikaladevi N. Delaunay triangulation based intelligent system for the diagnosis of covid from the low radiation CXR images. JOURNAL OF AMBIENT INTELLIGENCE AND HUMANIZED COMPUTING 2022; 14:1-10. [PMID: 37360780 PMCID: PMC10112999 DOI: 10.1007/s12652-022-04329-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 07/11/2022] [Indexed: 06/28/2023]
Abstract
Covid-19 is a viral infection that causes a profound impact on the lives of the World population. It is a global pandemic spreading across the world in a faster way. It made a global impact on the health, economy, and education system in all the countries. As it is a rapidly spreading disease, prevention demands a fast and accurate diagnosis system. In a highly densely populated country, the demand for fast and affordable early diagnosis is required to reduce the disaster. Within this diagnosis time, the infection spreads rapidly and worsens the infected person's status. To provide a faster and more affordable early diagnosis of covid, posterior-anterior chest radiographs (CXR) are used. Diagnosis of covid from CXR is challenging due to the images' interclass similarity and intraclass variation. This study proposes a deep learning-based robust early diagnosis method for covid. To balance the intraclass variation and interclass similarity in CXR images, the deep fused Delaunay triangulation (DT) is proposed as the CXR has low radiation and unbalanced quality images. The deep features are to be extracted to increase the robustness of the diagnosis method. Without segmentation, the proposed DT algorithm achieves the accurate visualization of the suspicious region in the CXR. The proposed model is trained and tested by the largest benchmark covid-19 radiology dataset with 3616 covid CXR images and 3500 standard CXR images. The performance of the proposed system is analyzed in terms of accuracy, sensitivity, specificity, and AUC. The proposed system yields the highest validation accuracy.
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Affiliation(s)
- N. Sasikaladevi
- Dept. of CSE, School of Computing, SASTRA Deemed University, Thanjavur, TN India
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Mortality Prediction Analysis among COVID-19 Inpatients Using Clinical Variables and Deep Learning Chest Radiography Imaging Features. Tomography 2022; 8:1791-1803. [PMID: 35894016 PMCID: PMC9326627 DOI: 10.3390/tomography8040151] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 07/04/2022] [Accepted: 07/07/2022] [Indexed: 11/17/2022] Open
Abstract
The emergence of the COVID-19 pandemic over a relatively brief interval illustrates the need for rapid data-driven approaches to facilitate clinical decision making. We examined a machine learning process to predict inpatient mortality among COVID-19 patients using clinical and chest radiographic data. Modeling was performed with a de-identified dataset of encounters prior to widespread vaccine availability. Non-imaging predictors included demographics, pre-admission clinical history, and past medical history variables. Imaging features were extracted from chest radiographs by applying a deep convolutional neural network with transfer learning. A multi-layer perceptron combining 64 deep learning features from chest radiographs with 98 patient clinical features was trained to predict mortality. The Local Interpretable Model-Agnostic Explanations (LIME) method was used to explain model predictions. Non-imaging data alone predicted mortality with an ROC-AUC of 0.87 ± 0.03 (mean ± SD), while the addition of imaging data improved prediction slightly (ROC-AUC: 0.91 ± 0.02). The application of LIME to the combined imaging and clinical model found HbA1c values to contribute the most to model prediction (17.1 ± 1.7%), while imaging contributed 8.8 ± 2.8%. Age, gender, and BMI contributed 8.7%, 8.2%, and 7.1%, respectively. Our findings demonstrate a viable explainable AI approach to quantify the contributions of imaging and clinical data to COVID mortality predictions.
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Akbar SB, Thanupillai K, Sundararaj S. Combining the advantages of AlexNet convolutional deep neural network optimized with anopheles search algorithm based feature extraction and random forest classifier for COVID-19 classification. CONCURRENCY AND COMPUTATION : PRACTICE & EXPERIENCE 2022; 34:e6958. [PMID: 35573661 PMCID: PMC9087014 DOI: 10.1002/cpe.6958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 02/24/2022] [Accepted: 02/26/2022] [Indexed: 06/15/2023]
Abstract
In this article, COVID-19 detection and classification framework based on anopheles search optimized AlexNet convolutional deep neural network for random forest classifier is implemented. Here, the COVID-19 dataset is taken from Joseph Paul Cohen database. Then, the input images are preprocessed with the help of fuzzy gray level difference histogram equalization technique (FGLHE) and fuzzy stacking technique for color enhancement and noise elimination in the input images. The FGLHE technique and fuzzy stacking technique are combined together and forms into stacked dataset image. This stacked dataset are trained with AlexNet convolutional deep neural network model and the feature packages acquired via the models are processed by the anopheles search algorithm. Subsequently, the efficient features are combined and delivered to random forest (RF) classifier. The proposed approach is implemented in MATLAB. The proposed ADCNN-ASA-RFC provides 91.66%, 69.13%, 34.86%, and 70.13% higher accuracy, 79.13%, 60.33%, and 63.34% higher specificity and 77.13%, 58.45%, 25.86%, and 55.33%, higher sensitivity compared with existing algorithms. At last, the simulation outcomes demonstrate that the proposed system can be able to find the optimal solutions efficiently and accurately with COVID-19 diagnosis.
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Affiliation(s)
- Sumaiya Begum Akbar
- Department of Electronics and Communication EngineeringR.M.D Engineering CollegeChennaiIndia
| | - Kalaiselvi Thanupillai
- Department of Electronics and Instrumentation EngineeringEaswari Engineering CollegeChennaiIndia
| | - Suganthi Sundararaj
- Department of Computer and communicationSri Sairam Institute of TechnologyChennaiIndia
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IoMT-fog-cloud based architecture for Covid-19 detection. Biomed Signal Process Control 2022; 76:103715. [PMID: 35432577 PMCID: PMC9005369 DOI: 10.1016/j.bspc.2022.103715] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 02/23/2022] [Accepted: 04/09/2022] [Indexed: 12/18/2022]
Abstract
Limitations of available literature Nowadays, coronavirus disease 2019 (COVID-19) is the world-wide pandemic due to its mutation over time. Several works done for covid-19 detection using different techniques however, the use of small datasets and the lack of validation tests still limit their works. Also, they depend only on the increasing the accuracy and the precision of the model without giving attention to their complexity which is one of the main conditions in the healthcare application. Moreover, the majority of healthcare applications with cloud computing use centralization transmission process of various and vast volumes of information what make the privacy and security of personal patient’s data easy for hacking. Furthermore, the traditional architecture of the cloud showed many weaknesses such as the latency and the low persistent performance. Method proposed by the author with technical information In our system, we used Discrete Wavelet transform (DWT) and Principal Component Analysis (PCA) and different energy tracking methods such as Teager Kaiser Energy Operator (TKEO), Shannon Wavelet Entropy Energy (SWEE), Log Energy Entropy (LEE) for preprocessing the dataset. For the first step, DWT used to decompose the image into coefficients where each coefficient is vector of features. Then, we apply PCA for reduction the dimension by choosing the most essential features in features map. Moreover, we used TKEO, SHEE, LEE to track the energy in the features in order to select the best and the most optimal features to reduce the complexity of the model. Also, we used CNN model that contains convolution and pooling layers due to its efficacity in image processing. Furthermore, we depend on deep neurons using small kernel windows which provide better features learning and minimize the model's complexity. The used DWT-PCA technique with TKEO filtering technique showed great results in terms of noise measure where the Peak Signal-to-Noise Ratio (PSNR) was 3.14 dB and the Signal-to-Noise Ratio (SNR) of original and preprocessed image was 1.48, 1.47 respectively which guaranteed the performance of the filtering techniques. The experimental results of the CNN model ensure the high performance of the proposed system in classifying the covid-19, pneumonia and normal cases with 97% of accuracy, 100% of precession, 97% of recall, 99% of F1-score, and 98% of AUC. Advantages and application of proposed method The use of DWT-PCA and TKEO optimize the selection of the optimal features and reduce the complexity of the model. The proposed system achieves good results in identifying covid-19, pneumonia and normal cases. The implementation of fog computing as an intermediate layer to solve the latency problem and computational cost which improve the Quality of Service (QoS) of the cloud. Fog computing ensure the privacy and security of the patients’ data. With further refinement and validation, the IFC-Covid system will be real-time and effective application for covid-19 detection, which is user friendly and costless.
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Singh G. Think positive: An interpretable neural network for image recognition. Neural Netw 2022; 151:178-189. [PMID: 35439663 PMCID: PMC8978459 DOI: 10.1016/j.neunet.2022.03.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 03/16/2022] [Accepted: 03/28/2022] [Indexed: 11/19/2022]
Abstract
The COVID-19 pandemic is an ongoing pandemic and is placing additional burden on healthcare systems around the world. Timely and effectively detecting the virus can help to reduce the spread of the disease. Although, RT-PCR is still a gold standard for COVID-19 testing, deep learning models to identify the virus from medical images can also be helpful in certain circumstances. In particular, in situations when patients undergo routine X-rays and/or CT-scans tests but within a few days of such tests they develop respiratory complications. Deep learning models can also be used for pre-screening prior to RT-PCR testing. However, the transparency/interpretability of the reasoning process of predictions made by such deep learning models is essential. In this paper, we propose an interpretable deep learning model that uses positive reasoning process to make predictions. We trained and tested our model over the dataset of chest CT-scan images of COVID-19 patients, normal people and pneumonia patients. Our model gives the accuracy, precision, recall and F-score equal to 99.48%, 0.99, 0.99 and 0.99, respectively.
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Affiliation(s)
- Gurmail Singh
- Faculty of Engineering and Applied Science, University of Regina, 3737 Wascana Pkwy, Regina, SK S4S 0A2, Canada.
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Improved Analysis of COVID-19 Influenced Pneumonia from the Chest X-Rays Using Fine-Tuned Residual Networks. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:9414567. [PMID: 35720905 PMCID: PMC9201714 DOI: 10.1155/2022/9414567] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 05/10/2022] [Accepted: 05/20/2022] [Indexed: 12/20/2022]
Abstract
COVID-19 has remained a threat to world life despite a recent reduction in cases. There is still a possibility that the virus will evolve and become more contagious. If such a situation occurs, the resulting calamity will be worse than in the past if we act irresponsibly. COVID-19 must be widely screened and recognized early to avert a global epidemic. Positive individuals should be quarantined immediately, as this is the only effective way to prevent a global tragedy that has occurred previously. No positive case should go unrecognized. However, current COVID-19 detection procedures require a significant amount of time during human examination based on genetic and imaging techniques. Apart from RT-PCR and antigen-based tests, CXR and CT imaging techniques aid in the rapid and cost-effective identification of COVID. However, discriminating between diseased and normal X-rays is a time-consuming and challenging task requiring an expert's skill. In such a case, the only solution was an automatic diagnosis strategy for identifying COVID-19 instances from chest X-ray images. This article utilized a deep convolutional neural network, ResNet, which has been demonstrated to be the most effective for image classification. The present model is trained using pretrained ResNet on ImageNet weights. The versions of ResNet34, ResNet50, and ResNet101 were implemented and validated against the dataset. With a more extensive network, the accuracy appeared to improve. Nonetheless, our objective was to balance accuracy and training time on a larger dataset. By comparing the prediction outcomes of the three models, we concluded that ResNet34 is a more likely candidate for COVID-19 detection from chest X-rays. The highest accuracy level reached 98.34%, which was higher than the accuracy achieved by other state-of-the-art approaches examined in earlier studies. Subsequent analysis indicated that the incorrect predictions occurred with approximately 100% certainty. This uncovered a severe weakness in CNN, particularly in the medical area, where critical decisions are made. However, this can be addressed further in a future study by developing a modified model to incorporate uncertainty into the predictions, allowing medical personnel to manually review the incorrect predictions.
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Mondal AK. COVID-19 prognosis using limited chest X-ray images. Appl Soft Comput 2022; 122:108867. [PMID: 35494338 PMCID: PMC9035620 DOI: 10.1016/j.asoc.2022.108867] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 01/18/2022] [Accepted: 04/09/2022] [Indexed: 01/31/2023]
Abstract
The COrona VIrus Disease 2019 (COVID-19) pandemic is an ongoing global pandemic that has claimed millions of lives till date. Detecting COVID-19 and isolating affected patients at an early stage is crucial to contain its rapid spread. Although accurate, the primary viral test 'Reverse Transcription Polymerase Chain Reaction' (RT-PCR) for COVID-19 diagnosis has an elaborate test kit, and the turnaround time is high. This has motivated the research community to develop CXR based automated COVID-19 diagnostic methodologies. However, COVID-19 being a novel disease, there is no annotated large-scale CXR dataset for this particular disease. To address the issue of limited data, we propose to exploit a large-scale CXR dataset collected in the pre-COVID era and train a deep neural network in a self-supervised fashion to extract CXR specific features. Further, we compute attention maps between the global and the local features of the backbone convolutional network while finetuning using a limited COVID-19 CXR dataset. We empirically demonstrate the effectiveness of the proposed method. We provide a thorough ablation study to understand the effect of each proposed component. Finally, we provide visualizations highlighting the critical patches instrumental to the predictive decision made by our model. These saliency maps are not only a stepping stone towards explainable AI but also aids radiologists in localizing the infected area.
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2dCNN-BiCuDNNLSTM: Hybrid Deep-Learning-Based Approach for Classification of COVID-19 X-ray Images. SUSTAINABILITY 2022. [DOI: 10.3390/su14116785] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The coronavirus (COVID-19) is a major global disaster of humankind, in the 21st century. COVID-19 initiates breathing infection, including pneumonia, common cold, sneezing, and coughing. Initial detection becomes crucial, to classify the virus and limit its spread. COVID-19 infection is similar to other types of pneumonia, and it may result in severe pneumonia, with bundles of illness onsets. This research is focused on identifying people affected by COVID-19 at a very early stage, through chest X-ray images. Chest X-ray classification is a beneficial method in the identification, follow up, and evaluation of treatment efficiency, for people with pneumonia. This research, also, considered chest X-ray classification as a basic method to evaluate the existence of lung irregularities in symptomatic patients, alleged for COVID-19 disease. The aim of this research is to classify COVID-19 samples from normal chest X-ray images and pneumonia-affected chest X-ray images of people, for early identification of the disease. This research will help people in diagnosing individuals for viruses and insisting that people receive proper treatment as well as preventive action, to stop the spread of the virus. To provide accurate classification of disease in patients’ chest X-ray images, this research proposed a novel classification model, named 2dCNN-BiCuDNNLSTM, which combines two-dimensional Convolutional Neural Network (CNN) and a Bidirectional CUDA Deep Neural Network Long Short-Term Memory (BiCuDNNLSTM). Deep learning is known for identifying the patterns in available data that will be helpful in accurate classification of disease. The proposed model (2dCNN and BiCuDNNLSTM layers, with proper hyperparameters) can differentiate normal chest X-rays from viral pneumonia and COVID-19 ones, with high accuracy. A total of 6863 X-ray images (JPEG) (1000 COVID-19 patients, 3863 normal cases, and 2000 pneumonia patients) have been engaged, to examine the achievement of the suggested neural network; 80% of the images dataset for every group is received for proposed model training, 10% is accepted for validation, and 10% is accepted for testing. It is observed that the proposed model acquires the towering classification accuracy of 93%. The proposed network is used for predictive analysis, to prompt people regarding the risk of early detection of COVID-19. X-ray images help to classify people with COVID-19 variants and to indicate the severity of disease in the future. This study demonstrates the effectiveness of the proposed CUDA-enabled hybrid deep learning models, to classify the X-ray image data, with a high accuracy of detecting COVID-19. It reveals that the proposed model can be applicable in numerous virus classifications. The chest X-ray classification is a commonly available and reasonable approach, for diagnosing people with lower respiratory signs or suspected COVID-19. Therefore, it is demonstrated that the proposed model has an efficient and promising accomplishment for classifying COVID-19 through X-ray images. The proposed hybrid model can, efficiently, preserve the comprehensive characteristic facts of the image data, for more exceptional concluding classification results than an individual neural network.
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Aslan MF, Hasikin K, Yusefi A, Durdu A, Sabanci K, Azizan MM. COVID-19 Isolation Control Proposal via UAV and UGV for Crowded Indoor Environments: Assistive Robots in the Shopping Malls. Front Public Health 2022; 10:855994. [PMID: 35734764 PMCID: PMC9208298 DOI: 10.3389/fpubh.2022.855994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 05/10/2022] [Indexed: 11/13/2022] Open
Abstract
Artificial intelligence researchers conducted different studies to reduce the spread of COVID-19. Unlike other studies, this paper isn't for early infection diagnosis, but for preventing the transmission of COVID-19 in social environments. Among the studies on this is regarding social distancing, as this method is proven to prevent COVID-19 to be transmitted from one to another. In the study, Robot Operating System (ROS) simulates a shopping mall using Gazebo, and customers are monitored by Turtlebot and Unmanned Aerial Vehicle (UAV, DJI Tello). Through frames analysis captured by Turtlebot, a particular person is identified and followed at the shopping mall. Turtlebot is a wheeled robot that follows people without contact and is used as a shopping cart. Therefore, a customer doesn't touch the shopping cart that someone else comes into contact with, and also makes his/her shopping easier. The UAV detects people from above and determines the distance between people. In this way, a warning system can be created by detecting places where social distance is neglected. Histogram of Oriented-Gradients (HOG)-Support Vector Machine (SVM) is applied by Turtlebot to detect humans, and Kalman-Filter is used for human tracking. SegNet is performed for semantically detecting people and measuring distance via UAV. This paper proposes a new robotic study to prevent the infection and proved that this system is feasible.
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Affiliation(s)
- Muhammet Fatih Aslan
- Electrical and Electronics Engineering, Karamanoglu Mehmetbey University, Karaman, Turkey
| | - Khairunnisa Hasikin
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
- Center of Image and Signal Processing (CISIP), Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Abdullah Yusefi
- Computer Engineering, Konya Technical University, Konya, Turkey
| | - Akif Durdu
- Electrical and Electronics Engineering, Konya Technical University, Konya, Turkey
| | - Kadir Sabanci
- Electrical and Electronics Engineering, Karamanoglu Mehmetbey University, Karaman, Turkey
| | - Muhammad Mokhzaini Azizan
- Department of Electrical and Electronic Engineering, Faculty of Engineering and Built Environment, Universiti Sains Islam Malaysia, Bandar Baru Nilai, Malaysia
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Chandrasekar KS. Exploring the Deep-Learning Techniques in Detecting the Presence of Coronavirus in the Chest X-Ray Images: A Comprehensive Review. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING : STATE OF THE ART REVIEWS 2022; 29:5381-5395. [PMID: 35645554 PMCID: PMC9126247 DOI: 10.1007/s11831-022-09768-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Accepted: 05/07/2022] [Indexed: 06/15/2023]
Abstract
The deadly coronavirus (COVID-19) is one of the dangerous diseases affecting the entire world and is fastly spreading disease. This spread can be reduced by detecting and quarantining the patients at an earlier stage. The most common diagnostic tool for detecting the coronavirus is the Reverse transcription-polymerase chain reaction (RT-PCR) test which is time-consuming and also needs more equipment and manpower. Furthermore, many countries had a deficit of RTPCR kits. This is why it is exceptionally very crucial to develop artificial intelligence (AI) techniques to detect the outbreak of coronavirus. This motivated many researchers to involve deep-learning methods using X-ray images for more decisive analysis. Thus, this paper outlines many papers that used traditional and pre-trained deep learning methods that are newly developed to reduce the spread of COVID-19 disease. Specifically, advanced deep learning methods play a critical role in extracting the features from the chest X-ray images. These features are then used to classify whether the patient is affected with coronavirus or not. Besides, this paper shows that deep learning techniques have probable applications in the medical field.
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Aggarwal P, Mishra NK, Fatimah B, Singh P, Gupta A, Joshi SD. COVID-19 image classification using deep learning: Advances, challenges and opportunities. Comput Biol Med 2022; 144:105350. [PMID: 35305501 PMCID: PMC8890789 DOI: 10.1016/j.compbiomed.2022.105350] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 02/10/2022] [Accepted: 02/22/2022] [Indexed: 12/16/2022]
Abstract
Corona Virus Disease-2019 (COVID-19), caused by Severe Acute Respiratory Syndrome-Corona Virus-2 (SARS-CoV-2), is a highly contagious disease that has affected the lives of millions around the world. Chest X-Ray (CXR) and Computed Tomography (CT) imaging modalities are widely used to obtain a fast and accurate diagnosis of COVID-19. However, manual identification of the infection through radio images is extremely challenging because it is time-consuming and highly prone to human errors. Artificial Intelligence (AI)-techniques have shown potential and are being exploited further in the development of automated and accurate solutions for COVID-19 detection. Among AI methodologies, Deep Learning (DL) algorithms, particularly Convolutional Neural Networks (CNN), have gained significant popularity for the classification of COVID-19. This paper summarizes and reviews a number of significant research publications on the DL-based classification of COVID-19 through CXR and CT images. We also present an outline of the current state-of-the-art advances and a critical discussion of open challenges. We conclude our study by enumerating some future directions of research in COVID-19 imaging classification.
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Affiliation(s)
| | | | - Binish Fatimah
- The Department of ECE, CMR Institute of Technology, Bengaluru, India
| | - Pushpendra Singh
- The Department of ECE, National Institute of Technology Hamirpur, HP, India,Corresponding author
| | - Anubha Gupta
- The Department of ECE, IIIT-Delhi, Delhi, 110020, India
| | - Shiv Dutt Joshi
- The Department of EE, Indian Institute of Technology Delhi, Delhi 110016, India
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Santosh KC, Ghosh S, GhoshRoy D. Deep Learning for Covid-19 Screening Using Chest X-Rays in 2020: A Systematic Review. INT J PATTERN RECOGN 2022. [DOI: 10.1142/s0218001422520103] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Artificial Intelligence (AI) has promoted countless contributions in the field of healthcare and medical imaging. In this paper, we thoroughly analyze peer-reviewed research findings/articles on AI-guided tools for Covid-19 analysis/screening using chest X-ray images in the year 2020. We discuss on how far deep learning algorithms help in decision-making. We identify/address data collections, methodical contributions, promising methods, and challenges. However, a fair comparison is not trivial as dataset sizes vary over time, throughout the year 2020. Even though their unprecedented efforts in building AI-guided tools to detect, localize, and segment Covid-19 cases are limited to education and training, we elaborate on their strengths and possible weaknesses when we consider the need of cross-population train/test models. In total, with search keywords: (Covid-19 OR Coronavirus) AND chest x-ray AND deep learning AND artificial intelligence AND medical imaging in both PubMed Central Repository and Web of Science, we systematically reviewed 58 research articles and performed meta-analysis.
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Affiliation(s)
- KC Santosh
- 2AI: Applied Artificial Intelligence Research Lab – Computer Science, University of South Dakota, Vermillion, SD 57069, USA
| | - Supriti Ghosh
- 2AI: Applied Artificial Intelligence Research Lab – Computer Science, University of South Dakota, Vermillion, SD 57069, USA
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Hammad M, Tawalbeh L, Iliyasu AM, Sedik A, Abd El-Samie FE, Alkinani MH, Abd El-Latif AA. Efficient multimodal deep-learning-based COVID-19 diagnostic system for noisy and corrupted images. JOURNAL OF KING SAUD UNIVERSITY. SCIENCE 2022; 34:101898. [PMID: 35185304 PMCID: PMC8832871 DOI: 10.1016/j.jksus.2022.101898] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 02/02/2022] [Accepted: 02/04/2022] [Indexed: 05/28/2023]
Abstract
INTRODUCTION In humanity's ongoing fight against its common enemy of COVID-19, researchers have been relentless in finding efficient technologies to support mitigation, diagnosis, management, contact tracing, and ultimately vaccination. OBJECTIVES Engineers and computer scientists have deployed the potent properties of deep learning models (DLMs) in COVID-19 detection and diagnosis. However, publicly available datasets are often adulterated during collation, transmission, or storage. Meanwhile, inadequate, and corrupted data are known to impact the learnability and efficiency of DLMs. METHODS This study focuses on enhancing previous efforts via two multimodal diagnostic systems to extract required features for COVID-19 detection using adulterated chest X-ray images. Our proposed DLM consists of a hierarchy of convolutional and pooling layers that are combined to support efficient COVID-19 detection using chest X-ray images. Additionally, a batch normalization layer is used to curtail overfitting that usually arises from the convolution and pooling (CP) layers. RESULTS In addition to matching the performance of standard techniques reported in the literature, our proposed diagnostic systems attain an average accuracy of 98% in the detection of normal, COVID-19, and viral pneumonia cases using corrupted and noisy images. CONCLUSIONS Such robustness is crucial for real-world applications where data is usually unavailable, corrupted, or adulterated.
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Affiliation(s)
- Mohamed Hammad
- Information Technology Department, Faculty of Computers and Information, Menoufia University, Shebin El-koom 32511, Egypt
| | - Lo'ai Tawalbeh
- Director of Cyber Security Center, Department of Computing and Cybersecurity, Texas A&M University-San Antonio, San Antonio, TX, USA
| | - Abdullah M Iliyasu
- School of Computing, Tokyo Institute of Technology, Yokohama 226-8502, Japan
| | - Ahmed Sedik
- Department of the Robotics and Intelligent Machines, Kafrelsheikh University, Kafrelsheikh 33511, Egypt
| | - Fathi E Abd El-Samie
- Department of Electronics and Electrical Communications Menoufa University, Menouf 32952, Egypt
| | - Monagi H Alkinani
- College of Computer Sciences and Engineering, Department of Computer Science and Artificial Intelligence, University of Jeddah, Saudi Arabia
| | - Ahmed A Abd El-Latif
- EIAS Data Science Lab, College of Computer and Information Sciences, Prince Sultan University, Riyadh 11586, Saudi Arabia
- Department of Mathematics and Computer Science, Faculty of Science, Menoufia University, Shebin El-koom 32511, Egypt
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