Role of phytase producing microorganisms towards agricultural sustainability

Structural and Functional Characterization of Obesumbacterium proteus Phytase: A Comprehensive In-Silico Study

Phytate, also known as myoinositol hexakisphosphate, exhibits anti-nutritional properties and possesses a negative environmental impact. Phytase enzymes break down phytate, showing potential in various industries, necessitating thorough biochemical and computational characterizations. The present study focuses on Obesumbacterium proteus phytase (OPP), indicating its similarities with known phytases and its potential through computational analyses. Structure, functional, and docking results shed light on OPP's features, structural stability, strong and stable interaction, and dynamic conformation, with flexible sidechains that could adapt to different temperatures or specific functions. Root Mean Square fluctuation (RMSF) highlighted fluctuating regions in OPP, indicating potential sites for stability enhancement through mutagenesis. The systematic approach developed here could aid in enhancing enzyme properties via a rational engineering approach. Computational analysis expedites enzyme discovery and engineering, complementing the traditional biochemical methods to accelerate the quest for superior enzymes for industrial applications.

Effects of Dietary Supplementation of Quillaja Saponin or Phytase on the Growth Performance, Nutrient Digestibility, Faecal Gas Emissions, and Carcass Grade in Growing-Finishing Pigs

This experiment aimed to evaluate the effects of low doses of Quillaja saponin (QS) or phytase (PHY) on growth performance, nutrient digestibility, faecal gas emissions, and carcass grade in growing-finishing pigs. A total of 72 pigs (Landrace × Yorkshire × Duroc), each weighing 25.82 ± 1.68 kg, were selected and randomly assigned to three treatment groups. Each group had six replicates, with four pigs per pen, and the allocation was based on the four initial body weight and sex of the pigs. They were randomly divided into the following three diet groups: the basal diet as a control (CON) group, the basal diet + 0.02% PHY; and the basal diet + 0.01% QS. The experiment period lasted for 110 days. The results of adding 0.01% QS to the basal diet of pigs show that it can significantly increase the body weight (BW) of growing-finishing pigs on the 110th day (p < 0.05). QS can significantly increase the average daily weight gain (ADG) on Days 80-110 of the experiment (p < 0.05). QS can significantly increase the total average daily weight gain (TADG) of growing-finishing pigs during the entire experimental period (p < 0.05) and has a tendency to improve the average daily feed intake and feed conversion rate during the entire experimental period. However, QS has no significant effect on pig nutrient digestibility and carcass grade. In addition, we also found that QS has a tendency to reduce carbon dioxide emissions. However, adding 0.02% PHY to the basal diet of growing-finishing pigs can only increase the TADG during the entire experimental period. Throughout the experiment, adding PHY to the diet had no significant impact on the nutrient digestibility, faecal gas emissions, and carcass grade of growing-finishing pigs. In summary, adding QS to feed can significantly improve the growth performance of growing-finishing pigs, and has a tendency to improve faecal gas emissions. PHY can only improve the growth performance of growing-finishing pigs.

Statistical optimized production of Phytase from Hanseniaspora guilliermondii S1 and studies on purification, homology modelling and growth promotion effect

This investigation was performed to obtain a promising phytase enzyme producing yeast. In this regard, the PSM was used to isolate the phytase-producing Hanseniaspora guilliermondii S1 (MG663578) from sugarcane juice. The SSF optimum conditions for phytase generation were optimized using (OVAT) one-variable-at-a-time strategy using both Box-Behnken design and shake flask method (g/100 ml: 0.05 yeast extract, 0.15 Peptone, 0.05 malt extract 0.50 dextrose, pH 5.8 and 28ᵒC). The protein model developed was shown to be adequate for phytase production (91% accuracy), with the greatest phytase productivity in shake flask with substrate jack fruit seed powder being 395 ± 0.43 U/ml compared to 365U/ml for the BBD projected value. Crude Phytase was partially purified with a protein recovery of 43%, revealing a molecular weight of 120 kDa. It had an enzyme kinetic value of Km 3.3 mM and a Vmax of 19.1 mol/min. The 3D structure of PhyS1 amino acid sequences (PhyS1. B99990002) was simulated using Modeler 9.23, and the validated result revealed that 86.7% were in the favored region by Ramachandran plot. The SAVES server verified the 3D PDB file as satisfactory, and the model (in.pdb format) was uploaded in the PMDB database with the accession number ID: PM0082974. At the lab level, Hanseniaspora guilliermondii S1 (MG663578) producing phytase exhibited successful plant growth promotion activity in Ragi - CO 19 (Eleusine coracana L.) and Rice -Navarai - IR 64 (Oryza sativa L.). As a result, a phytase-based formulation for sustainable agriculture must be developed and tested on a large scale in diverse geographical areas of agricultural lands to determine its effect and potential on plant development.

Enhanced wheat productivity in saline soil through the combined application of poultry manure and beneficial microbes

BACKGROUND

Soil salinity is one of the major menaces to food security, particularly in dealing with the food demand of the ever-increasing global population. Production of cereal crops such as wheat is severely affected by soil salinity and improper fertilization. The present study aimed to examine the effect of selected microbes and poultry manure (PM) on seedling emergence, physiology, nutrient uptake, and growth of wheat in saline soil. A pot experiment was carried out in research area of Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Pakistan. Saline soil (12 dS m- 1 w/w) was developed by spiking using sodium chloride, and used in experiment along with two microbial strains (i.e., Alcaligenes faecalis MH-2 and Achromobacter denitrificans MH-6) and PM. Finally, wheat seeds (variety Akbar-2019) were sown in amended and unamended soil, and pots were placed following a completely randomized design. The wheat crop was harvested after 140 days of sowing.

RESULTS

The results showed a 10-39% increase (compared to non-saline control) in agronomic, physiological, and nutritive attributes of wheat plants when augmented with PM and microbes. Microbes together with PM significantly enhanced seedling emergence (up to 38%), agronomic (up to 36%), and physiological (up to 33%) in saline soil as compared to their respective unamended control. Moreover, the co-use of microbes and PM also improved soil's physicochemical attributes and enhanced N (i.e., 21.7%-17.1%), P (i.e., 24.1-29.3%), and K (i.e., 28.7%-25.3%) availability to the plant (roots and shoots, respectively). Similarly, the co-use of amendments also lowered the Na+ contents in soil (i.e., up to 62%) as compared to unamended saline control. This is the first study reporting the effects of the co-addition of newly identified salt-tolerant bacterial strains and PM on seedling emergence, physiology, nutrient uptake, and growth of wheat in highly saline soil.

CONCLUSION

Our findings suggest that co-using a multi-trait bacterial culture and PM could be an appropriate option for sustainable crop production in salt-affected soil.

New insights in bacterial organophosphorus cycling: From human pathogens to environmental bacteria

In terrestrial and aquatic ecosystems, phosphorus (P) availability controls primary production, with consequences for climate regulation and global food security. Understanding the microbial controls on the global P cycle is a prerequisite for minimising our reliance on non-renewable phosphate rock reserves and reducing pollution associated with excessive P fertiliser use. This recognised importance has reinvigorated research into microbial P cycling, which was pioneered over 75 years ago through the study of human pathogenic bacteria-host interactions. Immobilised organic P represents a significant fraction of the total P pool. Hence, microbes have evolved a plethora of mechanisms to transform this fraction into labile inorganic phosphate, the building block for numerous biological molecules. The 'genomics era' has revealed an extraordinary diversity of organic P cycling genes exist in the environment and studies going 'back to the lab' are determining how this diversity relates to function. Through this integrated approach, many hitherto unknown genes and proteins that are involved in microbial P cycling have been discovered. Not only do these fundamental discoveries push the frontier of our knowledge, but several examples also provide exciting opportunities for biotechnology and present possible solutions for improving the sustainability of how we grow our food, both locally and globally. In this review, we provide a comprehensive overview of bacterial organic P cycling, covering studies on human pathogens and how this knowledge is informing new discoveries in environmental microbiology.

Effect of Lactic Fermentation and Cooking on Nutrient and Mineral Digestibility of Peas

Peas are prospectively beneficial legumes in the human diet, and especially in a vegan and vegetarian diet, due to their high content of proteins and starch. Their frequent lack of appeal in human nutrition can be caused by their bloating effect and the content of some antinutritional compounds inhibiting the absorption of important nutrients. This study brings a comprehensive comparison of the nutrient content of pea flour after cooking and lactic fermentation before and after digestion in vitro. As a control sample, raw pea flour was used (sample 1). Raw pea flour was cooked for 10 min (sample 2) and 120 min (sample 3) at 100°C or it was fermented by Lactobacillus plantarum (sample 4) and cooked for 10 min at 100°C (sample 5). The samples were analyzed for protein and amino acids content, maltose, glucose, raffinose, total polyphenols, phytic acid, phytase, and mineral composition (P, Mg, Mn, Fe, Cu, Zn) before and after in vitro digestion. The results showed a significant (p &lt; 0.05) increase in the protein digestibility of samples 3, 4 and 5. In the fermented samples were observed a higher concentration of Cys, Met, and Gln when compared to non-fermented samples. The fermentation of pea flour resulted in a significant (p &lt; 0.05) decrease in glucose, maltose, and raffinose content. Cooking of pea flour for 10 and 120 min, but not fermenting, significantly (p &lt; 0.05) decreased the polyphenols content. Cooking and fermentation together did not affect phytic acid concentration and phytase activity. Mg, Mn, Fe, Cu and, Zn concentration in pea flour was significantly (p &lt; 0.05) decreased by cooking. On the other hand, fermentation significantly (p&lt;0.05) improved the bioaccessibility of Mn and Fe. These findings suggest that lactic fermentation of pea flour is a promising culinary preparation that can improve the digestibility of peas.

Effects of adding high-dosing Aspergillus oryzae phytase to corn-wheat-soybean meal-based basal diet on growth performance, nutrient digestibility, faecal gas emission, carcass traits and meat quality in growing-finishing pigs

This study tests the effects of supplementation of high-dosing Aspergillus oryzae phytase into the corn-wheat-soybean meal (SBM)-based basal diet on growth performance, nutrient digestibility, faecal gas emission, carcass traits and meat quality in growing-finishing pigs (29.73-110.86 kg live weight; 70-day-old to 166-day-old). A total of 56 crossbred pigs [(Landrace × Yorkshire) × Duroc] were divided into two dietary groups for a 96-day experiment (growing period, days 0-42; finishing period, days 43-96) with a completely randomized block design. There were seven replicate pens in each dietary group, and each pen has four pigs (two barrows and two gilts). The dietary treatments consisted of a corn-wheat-SBM-based nutrient sufficient basal diet or the basal diet supplemented with 1500 FTU/kg A. oryzae phytase. One phytase unit (FTU) was defined as the amount of enzyme that catalyses the release of one micromole phosphate from phytate/min at 37°C and pH 5.5. Higher average daily gain and lower feed conversion ratio were observed in growing-finishing pigs consuming a high-dosing A. oryzae phytase supplementing diet during days 0-42 and 0-96. Supplementing high-dosing A. oryzae phytase to the diet of growing-finishing pigs increased apparent total tract digestibility of phosphorus on days 42 and 96. Moreover, growing-finishing pigs fed the diet supplemented with high-dosing A. oryzae phytase had higher carcass back-fat thickness than those fed the control diet. However, the faecal gas emission and meat quality were not affected by high-dosing A. oryzae phytase supplementation. In conclusion, dietary supplementation of high-dosing A. oryzae phytase (1500 FTU/kg) had beneficial effects on the growth performance, apparent phosphorus digestibility and carcass back-fat thickness in growing-finishing pigs.

Improved thermal stability of phytase from Yersinia intermedia by physical adsorption immobilization on amino-multiwalled carbon nanotubes

Phytase is used in poultry diets to hydrolyze and release of phytate-bound phosphorus. Immobilization on nanomaterials optimizes enzyme's thermal stability and reusability. This study aimed to immobilize the recombinant phytase from Yersinia intermedia on the surface of amino-multi-walled carbon nanotubes (amino-MWCNTs) by physical adsorption. For this, zeta potential measurement, FTIR spectroscopic analysis, scanning electron microscope (SEM), kinetic as well as thermodynamic parameters were used to characterize immobilized phytase on amino-MWCNTs. According to results, the optimum temperature of the immobilized phytase increased from 50 to 70 °C and also thermal and pH stability improved considerably. Moreover, immobilization led to an increase in the value of K_m and k_cat from 0.13 to 0.33 mM and 2220 to 2776 s^-1, respectively. In addition, the changes in activation energy of thermal inactivation (ΔE^#_{a (D)}), the free energy of thermal inactivation (ΔG^#_D) and the enthalpy of thermal inactivation (ΔH^#_D) for immobilized phytase increased by +11.05, +24.7 and +11.4 kj/mole, respectively, while the value of the change in the entropy of thermal inactivation (ΔS^#_D) decreased by - 0.04 kj/mole.K. Overall, our results showed that adsorption immobilization of phytase on amino-MWCNTs increases thermal, pH and storage stability as well as some of kinetic parameters.

Optimization of Fermentation Process of Pomegranate Peel and Schisandra Chinensis and the Biological Activities of Fermentation Broth: Antioxidant Activity and Protective Effect Against H2O2-induced Oxidative Damage in HaCaT Cells

In this study, the lactobacillus fermentation process of pomegranate (Punica granatum L.) peel and Schisandra chinensis (Turcz.) Baill (PP&SC) was optimized by using the response surface method (RSM) coupled with a Box-Behnken design. The optimum fermentation condition with the maximal yield of ellagic acid (99.49 ± 0.47 mg/g) was as follows: 1:1 (w:w) ratio of pomegranate peel to Schisandra chinensis, 1% (v:v) of strains with a 1:1 (v:v) ratio of Lactobacillus Plantarum to Streptococcus Thermophilus, a 37 °C fermentation temperature, 33 h of fermentation time, 1:20 (g:mL) of a solid–liquid ratio and 3 g/100 mL of a glucose dosage. Under these conditions, the achieved fermentation broth (FB) showed stronger free radical scavenging abilities than the water extract (WE) against the ABTS⁺, DPPH, OH⁻ and O₂⁻ radicals. The cytotoxicity and the protective effect of FB on the intracellular ROS level in HaCaT cells were further detected by the Cell Counting Kit-8 (CCK-8) assay. The results showed that FB had no significant cytotoxicity toward HaCaT cells when its content was no more than 8 mg/mL. The FB with a concentration of 8 mg/mL had a good protective effect against oxidative damage, which can effectively reduce the ROS level to 125.94% ± 13.46% (p < 0.001) compared with 294.49% ± 11.54% of the control group in H₂O₂-damaged HaCaT cells. The outstanding antioxidant ability and protective effect against H₂O₂-induced oxidative damage in HaCaT cells promote the potential for the FB of PP&SC as a functional raw material of cosmetics.

In vitro assays for evaluating phytate degradation in non-ruminants: chances and limitations

The positive effects of phytases on the environment, animal welfare and animal feed costs have resulted in the continuous development and improvement of these enzymes in the non-ruminant feed market. To test the efficacy of these phytases, a large number of experimental animals are necessary, antagonising the animal welfare aspect of these enzymes. In the present review, we summarise the most prominent available in vitro assays for evaluating phytase enzymes and how far they can reduce the number of in vivo experiments. Several in vitro assays exist that differ in their setup, extent and conditions depending on the animal of interest and the research question. With the in vitro assays described, it is not possible to fully replace in vivo trials. However, for the investigation of phytase effects in feedstuffs, the use of an in vitro assay has several advantages. In vitro assays have the potential to be used for ranking feed enzymes and as screening tools. Applying in vitro protocols will result in a reduction in the number of animals or treatments usually necessary for an in vivo trial, thus acting towards the three Rs. © 2020 Society of Chemical Industry.

Effects of supplementation of high-dosing Trichoderma reesei phytase in the corn-wheat-soybean meal-based diets on growth performance, nutrient digestibility, carcass traits, faecal gas emission, and meat quality in growing-finishing pigs

We conduct this study to investigate the effects of corn-wheat-soybean meal (SBM)-based diet supplemented with high-dosing Trichoderma reesei phytase on the growth performance, nutrient digestibility, carcass traits, faecal gas emission and meat quality in growing-finishing pigs (29.71-110.58 kg live weight; 70-day-old to 166-day-old). A total of 56 crossbred pigs [(Landrace × Yorkshire) × Duroc] were used in 96-day experiment with a completely randomized block design. The growing period was from day 0 to 42, and the finishing period was from day 43 to 96. Pigs were randomly allocated to one of two treatments with seven replicate pens and four pigs (two barrows and two gilts) per pen and fed corn-wheat-SBM-based nutrient adequate basal diet or the basal diet supplemented with 1500 FTU/kg diet Trichoderma reesei phytase. One phytase unit (FTU) was defined as the amount of enzyme that catalyses the release of one micromole phosphate from phytate per minute at 37°C and pH 5.5. Dietary supplement with Trichoderma reesei phytase had increased body weight on day 96 and average daily gain in days 0-96. Moreover, high apparent total tract digestibility (ATTD) of phosphorus (P) was observed in pigs fed with Trichoderma reesei phytase. However, the carcass traits, faecal gas emission and meat quality of pigs were unaffected by Trichoderma reesei phytase supplementation. In conclusion, supplementation of high-dosing Trichoderma reesei phytase (1500 FTU/kg diet) in the corn-wheat-SBM-based nutrient adequate basal diet increased body weight and the ATTD of P, while no adverse effects were observed on the production characteristics.