1
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Galani A, Sipkema D, Sousa DZ. Hot prospects: harnessing thermophilic microbes for syngas fermentation. Trends Biotechnol 2025:S0167-7799(25)00162-3. [PMID: 40425413 DOI: 10.1016/j.tibtech.2025.04.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Revised: 04/21/2025] [Accepted: 04/28/2025] [Indexed: 05/29/2025]
Abstract
Syngas fermentation is emerging as a promising avenue for the sustainable production of fuels and chemicals. Primarily consisting of carbon monoxide (CO), hydrogen, and carbon dioxide, syngas can be produced by the gasification of sustainable feedstocks such as waste or biomass. Mesophilic carboxydotrophs, microorganisms capable of using CO, have received considerable attention and commercial success in the context of syngas fermentation. However, exploration of their thermophilic counterparts with the advantages of higher growth rates, improved tolerance to contaminants, and enhanced robustness remains limited. Capitalising on these unique attributes could improve the efficiency, productivity, and sustainability of syngas fermentation. This review summarises and explores carboxydotrophic thermophiles, assessing both promises and challenges associated with their application in syngas fermentation processes.
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Affiliation(s)
- Anastasia Galani
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Detmer Sipkema
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Diana Z Sousa
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands; Centre for Living Technologies, EWUU Alliance, Utrecht, The Netherlands.
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2
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Muñoz‐Duarte L, Chakraborty S, Grøn LV, Bambace MF, Catalano J, Philips J. H 2 Consumption by Various Acetogenic Bacteria Follows First-Order Kinetics up to H 2 Saturation. Biotechnol Bioeng 2025; 122:804-816. [PMID: 39731287 PMCID: PMC11895420 DOI: 10.1002/bit.28904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 10/31/2024] [Accepted: 11/26/2024] [Indexed: 12/29/2024]
Abstract
Acetogenic bacteria play an important role in various biotechnological processes, because of their chemolithoautotrophic metabolism converting carbon dioxide with molecular hydrogen (H2) as electron donor into acetate. As the main factor limiting acetogenesis is often H2, insights into the H2 consumption kinetics of acetogens are required to assess their potential in biotechnological processes. In this study, initial H2 consumption rates at a range of different initial H2 concentrations were measured for three different acetogens. Interestingly, for all three strains, H2 consumption was found to follow first-order kinetics, i.e. the H2 consumption rate increased linearly with the dissolved H2 concentration, up to almost saturated H2 levels (600 µM). This is in contrast with Monod kinetics and low half-saturation concentrations, which have commonly been assumed for acetogens. The obtained biomass specific first-order rate coefficients (k1 X) were further validated by comparison with values obtained by fitting first-order kinetics on previous time-course experimental results. The latter method was also used to determine the k1 X value of five additional acetogens strains. Biomass specific first-order rate coefficients were found to vary up to six-fold, with the highest k1 X for Acetobacterium wieringae and the lowest for Sporomusa sphaeroides. Overall, our results demonstrate the importance of the dissolved H2 concentration to understand the rate of acetogenesis in biotechnological systems.
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Affiliation(s)
- Laura Muñoz‐Duarte
- Department of Biological and Chemical EngineeringAarhus UniversityAarhusDenmark
| | - Susmit Chakraborty
- Department of Biological and Chemical EngineeringAarhus UniversityAarhusDenmark
| | - Louise Vinther Grøn
- Department of Biological and Chemical EngineeringAarhus UniversityAarhusDenmark
| | | | - Jacopo Catalano
- Department of Biological and Chemical EngineeringAarhus UniversityAarhusDenmark
| | - Jo Philips
- Department of Biological and Chemical EngineeringAarhus UniversityAarhusDenmark
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3
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Tamakuwala K, Kennedy RP, Li CS, Mutz B, Boller P, Bare SR, Kanan MW. Intermediate-Temperature Reverse Water-Gas Shift under Process-Relevant Conditions Catalyzed by Dispersed Alkali Carbonates. JACS AU 2025; 5:1083-1089. [PMID: 40151267 PMCID: PMC11937989 DOI: 10.1021/jacsau.5c00127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2025] [Revised: 02/27/2025] [Accepted: 03/04/2025] [Indexed: 03/29/2025]
Abstract
Current reverse water-gas shift (RWGS) technologies require extreme temperatures of >900 °C. The ability to perform RWGS at lower temperatures could open new opportunities for sustainable chemical and fuel production, but most catalyst materials produce methane and coke at lower temperatures, especially at elevated pressures targeted for industrial processes. Here we show that transition-metal-free catalysts composed of K2CO3 or Na2CO3 dispersed on commercial γ-Al2O3 supports (K2CO3/γ-Al2O3 and Na2CO3/γ-Al2O3) are highly effective RWGS catalysts in the intermediate-temperature regime. At a high gas hourly space velocity of 30,000 h-1 and operating pressure of 10 bar, K2CO3/γ-Al2O3 reached RWGS equilibrium-limited CO2 conversion at 550 °C and was 100% selective for CO at all temperatures tested (up to 700 °C). Na2CO3/γ-Al2O3 was also 100% CO-selective and only slightly less active. Both catalysts were stable for hundreds of hours on stream at 525 °C and tolerated large quantities of methane and propane impurity in the CO2/H2 feed. The unique performance attributes, combined with the low-cost components and extremely simple synthesis, make dispersed carbonate RWGS catalysts attractive options for industrial application.
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Affiliation(s)
- Kesha
N. Tamakuwala
- Stanford
University, 337 Campus Drive, Stanford, California 94305, United States
| | - Robert P. Kennedy
- Stanford
University, 337 Campus Drive, Stanford, California 94305, United States
| | - Chastity S. Li
- Stanford
University, 337 Campus Drive, Stanford, California 94305, United States
| | - Benjamin Mutz
- hte
GmbH, Kurpfalzring 104, 69123 Heidelberg, Germany
| | - Peter Boller
- hte
GmbH, Kurpfalzring 104, 69123 Heidelberg, Germany
| | - Simon R. Bare
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Matthew W. Kanan
- Stanford
University, 337 Campus Drive, Stanford, California 94305, United States
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4
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Zhang Y, Liang Y, Xiang H, Li P, Zhan D, Ding D, Du S, Ding Y, Liu W, Qiu X, Feng H. Critical impact of pressure regulation on carbon dioxide biosynthesis. BIORESOURCE TECHNOLOGY 2024; 413:131445. [PMID: 39278365 DOI: 10.1016/j.biortech.2024.131445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 09/03/2024] [Accepted: 09/03/2024] [Indexed: 09/18/2024]
Abstract
Carbon dioxide (CO2) biosynthesis is a promising alternative to traditional chemical synthesis. However, its application in engineering is hampered by poor gas mass transfer rates. Pressurization is an effective method to enhance mass transfer and increase synthesis yield, although the underlying mechanisms remain unclear. This review examines the effects of high pressure on CO2 biosynthesis, elucidating the mechanisms behind yield enhancement from three perspectives: microbial physiological traits, gas mass transfer and synthetic pathways. The critical role of pressurization in improving microbial activity and gas transfer efficiency is emphasized, with particular attention to maintaining pressure within microbial tolerance limits to maximize yield without compromising cell structure integrity.
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Affiliation(s)
- Yanqing Zhang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310018, Zhejiang, China; International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development, Zhejiang Gongshang University, Hangzhou 310012, Zhejiang, China
| | - Yuxiang Liang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Hai Xiang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Pingli Li
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Dongqing Zhan
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Danna Ding
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Shuangwei Du
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Yangcheng Ding
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Wen Liu
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Xiawen Qiu
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Huajun Feng
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310018, Zhejiang, China; College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China; International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development, Zhejiang Gongshang University, Hangzhou 310012, Zhejiang, China.
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5
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Vlaeminck E, Acuña Lopez P, Uitterhaegen E, Quataert K, Delmulle T, De Winter K, Soetaert WK. Pressure fermentation to boost CO 2-based poly(3-hydroxybutyrate) production using Cupriavidus necator. BIORESOURCE TECHNOLOGY 2024; 408:131162. [PMID: 39067712 DOI: 10.1016/j.biortech.2024.131162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 07/24/2024] [Accepted: 07/24/2024] [Indexed: 07/30/2024]
Abstract
CO2-based poly(3-hydroxybutyrate) (PHB) can be produced by the versatile bacterium Cupriavidus necator through chemolithoautotrophic fermentation, using a gas mixture consisting of CO2, H2, and O2. Despite offering a propitious route for carbon-neutral bioplastic manufacturing, its adoption is currently hampered by the wide explosive range of the required gas mixture, as well as the limited gas-to-liquid mass transfer rates. To address these challenges, pressure fermentation was applied as a robust and effective strategy, while ensuring safe operation by adhering to the limiting O2 concentration, utilizing state-of-the-art bioreactors. Consequently, exponential growth could be prolonged, boosting CO2-based PHB production from 10.8 g/L at 1.5 bar up to 29.6 g/L at 3 bar. The production gain closely aligns with the theoretical calculations, except for when the pressure was increased up to 4 bar. Overall, the demonstrated increase in PHB production underscores the potential of pressure fermentation to enhance aerobic gas fermentation.
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Affiliation(s)
- Elodie Vlaeminck
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium; Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, 9042 Ghent, Belgium
| | - Pedro Acuña Lopez
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium; Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, 9042 Ghent, Belgium
| | | | - Koen Quataert
- Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, 9042 Ghent, Belgium
| | - Tom Delmulle
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Karel De Winter
- Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, 9042 Ghent, Belgium.
| | - Wim K Soetaert
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium; Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, 9042 Ghent, Belgium
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6
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Caro-Astorga J, Meyerowitz JT, Stork DA, Nattermann U, Piszkiewicz S, Vimercati L, Schwendner P, Hocher A, Cockell C, DeBenedictis E. Polyextremophile engineering: a review of organisms that push the limits of life. Front Microbiol 2024; 15:1341701. [PMID: 38903795 PMCID: PMC11188471 DOI: 10.3389/fmicb.2024.1341701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 05/16/2024] [Indexed: 06/22/2024] Open
Abstract
Nature exhibits an enormous diversity of organisms that thrive in extreme environments. From snow algae that reproduce at sub-zero temperatures to radiotrophic fungi that thrive in nuclear radiation at Chernobyl, extreme organisms raise many questions about the limits of life. Is there any environment where life could not "find a way"? Although many individual extremophilic organisms have been identified and studied, there remain outstanding questions about the limits of life and the extent to which extreme properties can be enhanced, combined or transferred to new organisms. In this review, we compile the current knowledge on the bioengineering of extremophile microbes. We summarize what is known about the basic mechanisms of extreme adaptations, compile synthetic biology's efforts to engineer extremophile organisms beyond what is found in nature, and highlight which adaptations can be combined. The basic science of extremophiles can be applied to engineered organisms tailored to specific biomanufacturing needs, such as growth in high temperatures or in the presence of unusual solvents.
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Affiliation(s)
| | | | - Devon A. Stork
- Pioneer Research Laboratories, San Francisco, CA, United States
| | - Una Nattermann
- Pioneer Research Laboratories, San Francisco, CA, United States
| | | | - Lara Vimercati
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, United States
| | | | - Antoine Hocher
- London Institute of Medical Sciences, London, United Kingdom
| | - Charles Cockell
- UK Centre for Astrobiology, University of Edinburgh, Edinburgh, United Kingdom
| | - Erika DeBenedictis
- The Francis Crick Institute, London, United Kingdom
- Pioneer Research Laboratories, San Francisco, CA, United States
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7
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Hoffstadt K, Nikolausz M, Krafft S, Bonatelli ML, Kumar V, Harms H, Kuperjans I. Optimization of the Ex Situ Biomethanation of Hydrogen and Carbon Dioxide in a Novel Meandering Plug Flow Reactor: Start-Up Phase and Flexible Operation. Bioengineering (Basel) 2024; 11:165. [PMID: 38391651 PMCID: PMC10886298 DOI: 10.3390/bioengineering11020165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 02/01/2024] [Accepted: 02/05/2024] [Indexed: 02/24/2024] Open
Abstract
With the increasing use of renewable energy resources for the power grid, the need for long-term storage technologies, such as power-to-gas systems, is growing. Biomethanation provides the opportunity to store energy in the form of the natural gas-equivalent biomethane. This study investigates a novel plug flow reactor that employs a helical static mixer for the biological methanation of hydrogen and carbon dioxide. In tests, the reactor achieved an average methane production rate of 2.5 LCH4LR∗d (methane production [LCH4] per liter of reactor volume [LR] per day [d]) with a maximum methane content of 94%. It demonstrated good flexibilization properties, as repeated 12 h downtimes did not negatively impact the process. The genera Methanothermobacter and Methanobacterium were predominant during the initial phase, along with volatile organic acid-producing, hydrogenotrophic, and proteolytic bacteria. The average ratio of volatile organic acid to total inorganic carbon increased to 0.52 ± 0.04, while the pH remained stable at an average of pH 8.1 ± 0.25 from day 32 to 98, spanning stable and flexible operation modes. This study contributes to the development of efficient flexible biological methanation systems for sustainable energy storage and management.
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Affiliation(s)
- Kevin Hoffstadt
- Institute NOWUM-Energy, University of Applied Sciences Aachen, Heinrich-Mussmann-Str. 1, 52428 Juelich, Germany
| | - Marcell Nikolausz
- Department of Microbial Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, 04318 Leipzig, Germany
| | - Simone Krafft
- Institute NOWUM-Energy, University of Applied Sciences Aachen, Heinrich-Mussmann-Str. 1, 52428 Juelich, Germany
| | - Maria Letícia Bonatelli
- Department of Microbial Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, 04318 Leipzig, Germany
| | - Vivekanantha Kumar
- Institute NOWUM-Energy, University of Applied Sciences Aachen, Heinrich-Mussmann-Str. 1, 52428 Juelich, Germany
| | - Hauke Harms
- Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, 04318 Leipzig, Germany
| | - Isabel Kuperjans
- Institute NOWUM-Energy, University of Applied Sciences Aachen, Heinrich-Mussmann-Str. 1, 52428 Juelich, Germany
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8
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Sahoo KK, Katari JK, Das D. Recent advances in methanol production from methanotrophs. World J Microbiol Biotechnol 2023; 39:360. [PMID: 37891430 DOI: 10.1007/s11274-023-03813-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 10/19/2023] [Indexed: 10/29/2023]
Abstract
Methanol, the simplest aliphatic molecule of the alcohol family, finds diverse range of applications as an industrial solvent, a precursor for producing other chemicals (e.g., dimethyl ether, acetic acid and formaldehyde), and a potential fuel. There are conventional chemical routes for methanol production such as, steam reforming of natural gas to form syngas, followed by catalytic conversion into methanol; direct catalytic oxidation of methane, or hydrogenation of carbon dioxide. However, these chemical routes are limited by the requirement for expensive catalysts and extreme process conditions, and plausible environmental implications. Alternatively, methanotrophic microorganisms are being explored as biological alternative for methanol production, under milder process conditions, bypassing the requirement for chemical catalysts, and without imposing any adverse environmental impact. Methanotrophs possess inherent metabolic pathways for methanol production via biological methane oxidation or carbon dioxide reduction, thus offering a surplus advantage pertaining to the sequestration of two major greenhouse gases. This review sheds light on the recent advances in methanotrophic methanol production including metabolic pathways, feedstocks, metabolic engineering, and bioprocess engineering approaches. Furthermore, various reactor configurations are discussed in view of the challenges associated with solubility and mass transfer limitations in methanotrophic gas fermentation systems.
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Affiliation(s)
- Krishna Kalyani Sahoo
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, 781039, Assam, India
| | - John Kiran Katari
- School of Energy Science & Engineering, Indian Institute of Technology, Guwahati, 781039, Assam, India
| | - Debasish Das
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, 781039, Assam, India.
- School of Energy Science & Engineering, Indian Institute of Technology, Guwahati, 781039, Assam, India.
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9
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Ale Enriquez F, Ahring BK. Strategies to overcome mass transfer limitations of hydrogen during anaerobic gaseous fermentations: A comprehensive review. BIORESOURCE TECHNOLOGY 2023; 377:128948. [PMID: 36963702 DOI: 10.1016/j.biortech.2023.128948] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 03/10/2023] [Accepted: 03/20/2023] [Indexed: 06/18/2023]
Abstract
Fermentation of gaseous substrates such as carbon dioxide (CO2) has emerged as a sustainable approach for transforming greenhouse gas emissions into renewable fuels and biochemicals. CO2 fermentations are catalyzed by hydrogenotrophic methanogens and homoacetogens, these anaerobic microorganisms selectively reduce CO2 using hydrogen (H2) as electron donor. However, H2 possesses low solubility in liquid media leading to slow mass transport, limiting the reaction rates of CO2 reduction. Solving the problems of mass transport of H2 could boost the advance of technologies for valorizing industrial CO2-rich streams, like biogas or syngas. The application could further be extended to combustion flue gases or even atmospheric CO2. In this work, an overview of strategies for overcoming H2 mass transport limitations during methanogenic and acetogenic fermentation of H2 and CO2 is presented. The potential for using these strategies in future full-scale facilities and the knowledge gaps for these applications are discussed in detail.
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Affiliation(s)
- Fuad Ale Enriquez
- Bioproducts, Sciences, and Engineering Laboratory, Washington State University, Tri-Cities, Richland, WA 99354, USA; The Gene and Linda Voiland School of Chemical and Bioengineering, Washington State University, Pullman, WA 99164, USA
| | - Birgitte K Ahring
- Bioproducts, Sciences, and Engineering Laboratory, Washington State University, Tri-Cities, Richland, WA 99354, USA; The Gene and Linda Voiland School of Chemical and Bioengineering, Washington State University, Pullman, WA 99164, USA; Biological Systems Engineering Department, L.J. Smith Hall, Washington State University, Pullman, WA 99164, USA.
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10
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Ashoor S, Jun SH, Ko HD, Lee J, Hamelin J, Milferstedt K, Na JG. Polyhydroxybutyrate Production from Methane and Carbon Dioxide by a Syntrophic Consortium of Methanotrophs with Oxygenic Photogranules without an External Oxygen Supply. Microorganisms 2023; 11:1110. [PMID: 37317084 DOI: 10.3390/microorganisms11051110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Revised: 04/16/2023] [Accepted: 04/22/2023] [Indexed: 06/16/2023] Open
Abstract
Here, a syntrophic process was developed to produce polyhydroxy-β-butyrate (PHB) from a gas stream containing CH4 and CO2 without an external oxygen supply using a combination of methanotrophs with the community of oxygenic photogranules (OPGs). The co-culture features of Methylomonas sp. DH-1 and Methylosinus trichosporium OB3b were evaluated under carbon-rich and carbon-lean conditions. The critical role of O2 in the syntrophy was confirmed through the sequencing of 16S rRNA gene fragments. Based on their carbon consumption rates and the adaptation to a poor environment, M. trichosporium OB3b with OPGs was selected for methane conversion and PHB production. Nitrogen limitation stimulated PHB accumulation in the methanotroph but hindered the growth of the syntrophic consortium. At 2.9 mM of the nitrogen source, 1.13 g/L of biomass and 83.0 mg/L of PHB could be obtained from simulated biogas. These results demonstrate that syntrophy has the potential to convert greenhouse gases into valuable products efficiently.
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Affiliation(s)
- Selim Ashoor
- Department of Agricultural Microbiology, Faculty of Agriculture, Ain Shams University, Hadayek Shoubra, Cairo 11241, Egypt
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
| | - Seong-Hoon Jun
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
| | - Han Do Ko
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
| | - Jinwon Lee
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
| | - Jérôme Hamelin
- INRAE, University of Montpellier, LBE, 102 Avenue des Etangs, 11100 Narbonne, France
| | - Kim Milferstedt
- INRAE, University of Montpellier, LBE, 102 Avenue des Etangs, 11100 Narbonne, France
| | - Jeong-Geol Na
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
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11
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Sahoo KK, Sinha A, Das D. Process engineering strategy for improved methanol production in Methylosinus trichosporium through enhanced mass transfer and solubility of methane and carbon dioxide. BIORESOURCE TECHNOLOGY 2023; 371:128603. [PMID: 36634876 DOI: 10.1016/j.biortech.2023.128603] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 01/06/2023] [Accepted: 01/07/2023] [Indexed: 06/17/2023]
Abstract
Methanol was produced in a two-stage integrated process using Methylosinus trichosporium NCIMB 11131. The first stage involved sequestration of methane to produce methanotrophic biomass, which was utilized as biocatalyst in the second stage to convert CO2 into methanol. A combinatorial process engineering approach of design of micro-sparger, engagement of draft tube, addition of mass transfer vector and elevation of reactor operating pressure was employed to enhance production of biomass and methanol. Maximum biomass titer of 7.68 g/L and productivity of 1.46 g/L d-1 were achieved in an airlift reactor equipped with a micro-sparger of 5 µm pore size, in the presence of draft tube and 10 % v/v silicone oil, as mass transfer vector. Maximum methane fixation rate was estimated to be 0.80 g/L d-1. Maximum methanol titer of 1.98 g/L was achieved under an elevated operating pressure of 4 bar in a high-pressure stirred tank reactor.
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Affiliation(s)
- Krishna Kalyani Sahoo
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Ankan Sinha
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Debasish Das
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India.
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12
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Liang B, Fu R, Ma Y, Hu L, Fei Q, Xing XH. Turning C1-gases to isobutanol towards great environmental and economic sustainability via innovative biological routes: two birds with one stone. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2022; 15:107. [PMID: 36221148 PMCID: PMC9555204 DOI: 10.1186/s13068-022-02202-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Accepted: 09/26/2022] [Indexed: 11/06/2022]
Abstract
BACKGROUND The dramatic increase in greenhouse gas (GHG) emissions, which causes serious global environmental issues and severe climate changes, has become a global problem of concern in recent decades. Currently, native and/or non-native C1-utilizing microbes have been modified to be able to effectively convert C1-gases (biogas, natural gas, and CO2) into isobutanol via biological routes. Even though the current experimental results are satisfactory in lab-scale research, the techno-economic feasibility of C1 gas-derived isobutanol production at the industrial scale still needs to be analyzed and evaluated, which will be essential for the future industrialization of C1-gas bioconversion. Therefore, techno-economic analyses were conducted in this study with comparisons of capital cost (CAPEX), operating cost (OPEX), and minimum isobutanol selling price (MISP) derived from biogas (scenario #1), natural gas (scenario #2), and CO2 (scenario #3) with systematic economic assessment. RESULTS By calculating capital investments and necessary expenses, the highest CAPEX ($317 MM) and OPEX ($67 MM) were projected in scenario #1 and scenario #2, respectively. Because of the lower CAPEX and OPEX from scenario #3, the results revealed that bioconversion of CO2 into isobutanol temporally exhibited the best economic performance with an MISP of $1.38/kg isobutanol. Furthermore, a single sensitivity analysis with nine different parameters was carried out for the production of CO2-derived isobutanol. The annual plant capacity, gas utilization rate, and substrate cost are the three most important economic-driving forces on the MISP of CO2-derived isobutanol. Finally, a multiple-point sensitivity analysis considering all five parameters simultaneously was performed using ideal targets, which presented the lowest MISP of $0.99/kg in a long-term case study. CONCLUSIONS This study provides a comprehensive assessment of the bioconversion of C1-gases into isobutanol in terms of the bioprocess design, mass/energy calculation, capital investment, operating expense, sensitivity analysis, and minimum selling price. Compared with isobutanol derived from biogas and natural gas, the CO2-based isobutanol showed better economic feasibility. A market competitive isobutanol derived from CO2 is predicable with lower CO2 cost, better isobutanol titer, and higher annual capacity. This study will help researchers and decision-makers explore innovative and effective approaches to neutralizing GHGs and focus on key economic-driving forces to improve techno-economic performance.
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Affiliation(s)
- Bobo Liang
- grid.43169.390000 0001 0599 1243Shaanxi Key Laboratory of Energy Chemical Process Intensification, School of Chemical Engineering and Technology, Xi’an Jiaotong University, Xi’an, China
| | - Rongzhan Fu
- grid.412262.10000 0004 1761 5538Shaanxi Key Laboratory of Degradable Biomedical Materials, School of Chemical Engineering, Northwest University, Xi’an, 710069 China
| | - Yingqun Ma
- grid.43169.390000 0001 0599 1243Shaanxi Key Laboratory of Energy Chemical Process Intensification, School of Chemical Engineering and Technology, Xi’an Jiaotong University, Xi’an, China
| | - Lizhen Hu
- grid.43169.390000 0001 0599 1243Shaanxi Key Laboratory of Energy Chemical Process Intensification, School of Chemical Engineering and Technology, Xi’an Jiaotong University, Xi’an, China
| | - Qiang Fei
- grid.43169.390000 0001 0599 1243Shaanxi Key Laboratory of Energy Chemical Process Intensification, School of Chemical Engineering and Technology, Xi’an Jiaotong University, Xi’an, China
| | - Xin-Hui Xing
- grid.12527.330000 0001 0662 3178MOE Key Lab of Industrial Biocatalysis, Institute of Biochemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, 100084 China
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13
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Sinharoy A, Lens PNL. Biological selenate and selenite reduction by waste activated sludge using hydrogen as electron donor. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 319:115745. [PMID: 35853309 DOI: 10.1016/j.jenvman.2022.115745] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/21/2022] [Accepted: 07/10/2022] [Indexed: 06/15/2023]
Abstract
Biological reduction of selenium oxyanions is widely used for selenium removal from wastewater. The process is, however, limited by the availability of a suitable, efficient and low cost electron donor. In this study, selenite and selenate reduction by waste activated sludge using hydrogen as the electron donor was investigated. Both selenite and selenate (80 mg/L) were completely removed using H2 within 8 days of incubation. In the presence of sulfate in the medium, the Se removal efficiency decreased to 77.8-95.4% (for selenite) and 88.2-99.4% (for selenate) at different temperatures and initial sulfate concentrations. Thermophilic conditions (50 °C) were better suited for both selenite and selenate reduction using H2 as electron donor with a 0.8-13.5% increase in overall Se removal. Similarly, sulfate reduction also increased from 69.1- 88% at 30 °C to 72-94.6% at 50 °C. Most of the H2 utilized was diverted towards Se and sulfate reduction with minimal production of byproducts such as methane (<0.32 mM) or volatile fatty acids (<0.92 mg/L). The elemental Se produced from selenite and selenate reduction ranged between 33.9 and 52.1 mg/L. The elemental selenium nanoparticles produced as a result of selenite and selenate reduction were characterized using transmission electron microscopy (TEM), energy-dispersive X-ray spectroscopy (EDX) and dynamic light scattering (DLS) spectroscopy. Furthermore, characterization of the biomass using Fourier-transform infrared spectroscopy (FTIR) and excitation emission matrix (EEM) spectra of the extracellular polymeric substances (EPS) produced by the waste activated sludge were performed to elucidate the mechanism of selenium oxyanion reduction to elemental selenium nanoparticles.
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Affiliation(s)
- Arindam Sinharoy
- National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland.
| | - Piet N L Lens
- National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland
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14
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Sivalingam V, Winkler D, Haugen T, Wentzel A, Dinamarca C. Syngas fermentation and microbial electrosynthesis integration as a single process unit. BIORESOURCE TECHNOLOGY 2022; 356:127314. [PMID: 35580790 DOI: 10.1016/j.biortech.2022.127314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 05/11/2022] [Accepted: 05/12/2022] [Indexed: 06/15/2023]
Abstract
Industrially relevant syngas (15 % CO, 15% H2, 20% N2 in 50% CO2) fermentation and microbial electrosynthesis were integrated as a single process unit in open and closed-circuit modes. This study examined the impact of electrochemical reducing power from -50 to -400 mV on the acetic acid synthesis and CO inhibition on fermentation. -150 mV vs. Ag/AgCl (3.0 NaCl) was identified as the lowest benchmark potential for improved acetic acid synthesis rate (0.263 mmol L-1h-1), which is 15-fold higher than the open circuit mode's rate. No significant inhibition by CO in the fermentation was observed, while 60% of the gas was consumed. Anodic potential above 2.0 V substantially lowered the product formation. Superseding the fermentation medium with fresh inoculum through a fed-batch operation helped lower the anodic potential.
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Affiliation(s)
- Vasan Sivalingam
- Department of Process, Energy and Environmental Technology, University of South-Eastern Norway, Norway
| | - Dietmar Winkler
- Department of Electrical Engineering, Information Technology and Cybernetics, University of South-Eastern Norway
| | - Tone Haugen
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Alexander Wentzel
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Carlos Dinamarca
- Department of Process, Energy and Environmental Technology, University of South-Eastern Norway, Norway.
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15
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Puiman L, Abrahamson B, Lans RGVD, Haringa C, Noorman HJ, Picioreanu C. Alleviating mass transfer limitations in industrial external-loop syngas-to-ethanol fermentation. Chem Eng Sci 2022. [DOI: 10.1016/j.ces.2022.117770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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16
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Katakojwala R, Tharak A, Sarkar O, Venkata Mohan S. Design and evaluation of gas fermentation systems for CO 2 reduction to C2 and C4 fatty acids: Non-genetic metabolic regulation with pressure, pH and reaction time. BIORESOURCE TECHNOLOGY 2022; 351:126937. [PMID: 35248708 DOI: 10.1016/j.biortech.2022.126937] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 02/26/2022] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
Addressing the carbon emissions through microbial mediated fermentation is an emerging interest. Custom designed and fabricated gas fermentation (GF) systems were evaluated to optimize the headspace pressure, pH (6.5, 7.5, and 8.5), fermentation time, and substrate concentration by employing enriched homoacetogenic chemolithoautotrophs in non-genetic approach. Headspace pressure showed marked influence on the metabolic conversion of inorganic carbon to acetic and butyric acids with 26% higher productivity than the control (atmospheric pressure). Maximum volatile fatty acid (VFA) yield of 3.7 g/L was observed at alkaline pH (8.5) under 2 bar pressure at carbon load of 10 g/L, 96 h). Acetic (3.0 g/L) and butyric (0.7 g/L) acids were the major products upon conversion of 85% of the inorganic substrate. A better in-situ buffering (β = 0.048) at pH 8.5 along with higher reductive current (RCC: -4.4 mA) depicted better performance of GF towards CO2 reduction.
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Affiliation(s)
- Ranaprathap Katakojwala
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Athmakuri Tharak
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Omprakash Sarkar
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India
| | - S Venkata Mohan
- Bioengineering and Environmental Sciences Lab, Department of Energy and Environmental Engineering, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500 007, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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17
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Zhang C, Ottenheim C, Weingarten M, Ji L. Microbial Utilization of Next-Generation Feedstocks for the Biomanufacturing of Value-Added Chemicals and Food Ingredients. Front Bioeng Biotechnol 2022; 10:874612. [PMID: 35480982 PMCID: PMC9035589 DOI: 10.3389/fbioe.2022.874612] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Accepted: 03/14/2022] [Indexed: 12/04/2022] Open
Abstract
Global shift to sustainability has driven the exploration of alternative feedstocks beyond sugars for biomanufacturing. Recently, C1 (CO2, CO, methane, formate and methanol) and C2 (acetate and ethanol) substrates are drawing great attention due to their natural abundance and low production cost. The advances in metabolic engineering, synthetic biology and industrial process design have greatly enhanced the efficiency that microbes use these next-generation feedstocks. The metabolic pathways to use C1 and C2 feedstocks have been introduced or enhanced into industrial workhorses, such as Escherichia coli and yeasts, by genetic rewiring and laboratory evolution strategies. Furthermore, microbes are engineered to convert these low-cost feedstocks to various high-value products, ranging from food ingredients to chemicals. This review highlights the recent development in metabolic engineering, the challenges in strain engineering and bioprocess design, and the perspectives of microbial utilization of C1 and C2 feedstocks for the biomanufacturing of value-added products.
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Affiliation(s)
- Congqiang Zhang
- Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
- *Correspondence: Congqiang Zhang, ,
| | - Christoph Ottenheim
- Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
| | - Melanie Weingarten
- Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
| | - LiangHui Ji
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
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18
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Park GW, Moon M, Park JH, Jo JH, Kim HJ, Lee JY, Lee HS, Lee JP, Lee S, Lee SY, Lee J, Na JG, Kim MS, Lee JS. Improving hydrogen production by pH adjustment in pressurized gas fermentation. BIORESOURCE TECHNOLOGY 2022; 346:126605. [PMID: 34953994 DOI: 10.1016/j.biortech.2021.126605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 12/13/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Gas fermentation utilizes syngas converted from biomass or waste as feedstock. A bubble column reactor for pressurizing was designed to increase the mass transfer rate between gas and liquid, and reduce energy consumption by medium agitation. Thermococcus onnurineus, a hydrogenic CO-oxidizer, was cultured initially under ambient pressure with the initial inlet gas composition; 60% CO and 40% N2. The maximum H2 productivity was 363 mmol/l/h, without pH adjustment. When additional pressure was applied, the pH rapidly declined; this may be attributed to the increased CO2 solubility under pressure. By controlling pH, H2 productivity increased up to 450 mmol/l/h; which is comparable to the previously reported H2 productivity in a continuous stirred tank reactor. The results may suggest energy saving potentials of bubble column reactors in gas fermentation. This finding may be applied to other gas fermentation processes, as syngas itself contains CO2 and many microbial processes also release CO2.
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Affiliation(s)
- Gwon Woo Park
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Myounghoon Moon
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Jeong-Ho Park
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea; Interdisciplinary Program for Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Jae-Hwan Jo
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea; Interdisciplinary Program for Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Hyouck Ju Kim
- Energy ICT Convergence Research Department, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea
| | - Jae Yong Lee
- Energy ICT Convergence Research Department, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea
| | - Hyun Sook Lee
- Marine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea; Department of Marine Biotechnology, University of Science and Technology, Daejeon 34113, Republic of Korea
| | - Joon-Pyo Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Sangmin Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Soo Youn Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Jiye Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
| | - Jeong-Geol Na
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul 04107, Republic of Korea
| | - Min-Sik Kim
- Energy Resources Upcycling Research Laboratory, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea.
| | - Jin-Suk Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research, Gwangju 61003, Republic of Korea
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19
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Ayol A, Peixoto L, Keskin T, Abubackar HN. Reactor Designs and Configurations for Biological and Bioelectrochemical C1 Gas Conversion: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph182111683. [PMID: 34770196 PMCID: PMC8583215 DOI: 10.3390/ijerph182111683] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 10/22/2021] [Accepted: 11/03/2021] [Indexed: 11/16/2022]
Abstract
Microbial C1 gas conversion technologies have developed into a potentially promising technology for converting waste gases (CO2, CO) into chemicals, fuels, and other materials. However, the mass transfer constraint of these poorly soluble substrates to microorganisms is an important challenge to maximize the efficiencies of the processes. These technologies have attracted significant scientific interest in recent years, and many reactor designs have been explored. Syngas fermentation and hydrogenotrophic methanation use molecular hydrogen as an electron donor. Furthermore, the sequestration of CO2 and the generation of valuable chemicals through the application of a biocathode in bioelectrochemical cells have been evaluated for their great potential to contribute to sustainability. Through a process termed microbial chain elongation, the product portfolio from C1 gas conversion may be expanded further by carefully driving microorganisms to perform acetogenesis, solventogenesis, and reverse β-oxidation. The purpose of this review is to provide an overview of the various kinds of bioreactors that are employed in these microbial C1 conversion processes.
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Affiliation(s)
- Azize Ayol
- Department of Environmental Engineering, Dokuz Eylul University, Izmir 35390, Turkey;
| | - Luciana Peixoto
- Centre of Biological Engineering (CEB), University of Minho, 4710-057 Braga, Portugal;
| | - Tugba Keskin
- Department of Environmental Protection Technologies, Izmir Democracy University, Izmir 35140, Turkey;
| | - Haris Nalakath Abubackar
- Chemical Engineering Laboratory, BIOENGIN Group, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, 15008 A Coruña, Spain
- Correspondence:
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20
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Effect of Elevated Hydrogen Partial Pressure on Mixed Culture Homoacetogenesis. CHEMICAL ENGINEERING SCIENCE: X 2021. [DOI: 10.1016/j.cesx.2021.100118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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21
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Neuendorf CS, Vignolle GA, Derntl C, Tomin T, Novak K, Mach RL, Birner-Grünberger R, Pflügl S. A quantitative metabolic analysis reveals Acetobacterium woodii as a flexible and robust host for formate-based bioproduction. Metab Eng 2021; 68:68-85. [PMID: 34537366 DOI: 10.1016/j.ymben.2021.09.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 08/30/2021] [Accepted: 09/15/2021] [Indexed: 11/24/2022]
Abstract
Cheap and renewable feedstocks such as the one-carbon substrate formate are emerging for sustainable production in a growing chemical industry. We investigated the acetogen Acetobacterium woodii as a potential host for bioproduction from formate alone and together with autotrophic and heterotrophic co-substrates by quantitatively analyzing physiology, transcriptome, and proteome in chemostat cultivations in combination with computational analyses. Continuous cultivations with a specific growth rate of 0.05 h-1 on formate showed high specific substrate uptake rates (47 mmol g-1 h-1). Co-utilization of formate with H2, CO, CO2 or fructose was achieved without catabolite repression and with acetate as the sole metabolic product. A transcriptomic comparison of all growth conditions revealed a distinct adaptation of A. woodii to growth on formate as 570 genes were changed in their transcript level. Transcriptome and proteome showed higher expression of the Wood-Ljungdahl pathway during growth on formate and gaseous substrates, underlining its function during utilization of one-carbon substrates. Flux balance analysis showed varying flux levels for the WLP (0.7-16.4 mmol g-1 h-1) and major differences in redox and energy metabolism. Growth on formate, H2/CO2, and formate + H2/CO2 resulted in low energy availability (0.20-0.22 ATP/acetate) which was increased during co-utilization with CO or fructose (0.31 ATP/acetate for formate + H2/CO/CO2, 0.75 ATP/acetate for formate + fructose). Unitrophic and mixotrophic conversion of all substrates was further characterized by high energetic efficiencies. In silico analysis of bioproduction of ethanol and lactate from formate and autotrophic and heterotrophic co-substrates showed promising energetic efficiencies (70-92%). Collectively, our findings reveal A. woodii as a promising host for flexible and simultaneous bioconversion of multiple substrates, underline the potential of substrate co-utilization to improve the energy availability of acetogens and encourage metabolic engineering of acetogenic bacteria for the efficient synthesis of bulk chemicals and fuels from sustainable one carbon substrates.
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Affiliation(s)
- Christian Simon Neuendorf
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
| | - Gabriel A Vignolle
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
| | - Christian Derntl
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
| | - Tamara Tomin
- Technische Universität Wien, Institute for Chemical Technologies and Analytics, Research Group Bioanalytics, Getreidemarkt 9, 1060, Vienna, Austria.
| | - Katharina Novak
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
| | - Robert L Mach
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
| | - Ruth Birner-Grünberger
- Technische Universität Wien, Institute for Chemical Technologies and Analytics, Research Group Bioanalytics, Getreidemarkt 9, 1060, Vienna, Austria; Medical University of Graz, Diagnostic and Research Institute of Pathology, Center for Medical Research, Stiftingtalstrasse 24, 8036, Graz, Austria.
| | - Stefan Pflügl
- Technische Universität Wien, Institute for Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Gumpendorfer Straße 1a, 1060, Vienna, Austria.
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22
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Debabov VG. Acetogens: Biochemistry, Bioenergetics, Genetics, and Biotechnological Potential. Microbiology (Reading) 2021. [DOI: 10.1134/s0026261721030024] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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23
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Fackler N, Heijstra BD, Rasor BJ, Brown H, Martin J, Ni Z, Shebek KM, Rosin RR, Simpson SD, Tyo KE, Giannone RJ, Hettich RL, Tschaplinski TJ, Leang C, Brown SD, Jewett MC, Köpke M. Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation. Annu Rev Chem Biomol Eng 2021; 12:439-470. [PMID: 33872517 DOI: 10.1146/annurev-chembioeng-120120-021122] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Owing to rising levels of greenhouse gases in our atmosphere and oceans, climate change poses significant environmental, economic, and social challenges globally. Technologies that enable carbon capture and conversion of greenhouse gases into useful products will help mitigate climate change by enabling a new circular carbon economy. Gas fermentation usingcarbon-fixing microorganisms offers an economically viable and scalable solution with unique feedstock and product flexibility that has been commercialized recently. We review the state of the art of gas fermentation and discuss opportunities to accelerate future development and rollout. We discuss the current commercial process for conversion of waste gases to ethanol, including the underlying biology, challenges in process scale-up, and progress on genetic tool development and metabolic engineering to expand the product spectrum. We emphasize key enabling technologies to accelerate strain development for acetogens and other nonmodel organisms.
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Affiliation(s)
- Nick Fackler
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
| | | | - Blake J Rasor
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Hunter Brown
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Jacob Martin
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Zhuofu Ni
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Kevin M Shebek
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Rick R Rosin
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
| | - Séan D Simpson
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
| | - Keith E Tyo
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , ,
| | - Richard J Giannone
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA; ,
| | - Robert L Hettich
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA; ,
| | | | - Ching Leang
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
| | - Steven D Brown
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
| | - Michael C Jewett
- Department of Chemical and Biological Engineering, Chemistry of Life Processes Institute, and Center for Synthetic Biology, Northwestern University, Evanston, Illinois 60208, USA; , , , , , , .,Robert H. Lurie Comprehensive Cancer Center and Simpson Querrey Institute, Northwestern University, Chicago, Illinois 60611, USA
| | - Michael Köpke
- LanzaTech Inc., Skokie, Illinois 60077, USA; , , , , , ,
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24
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Mann M, Hüser A, Schick B, Dinger R, Miebach K, Büchs J. Online monitoring of gas transfer rates during CO and CO/H 2 gas fermentation in quasi-continuously ventilated shake flasks. Biotechnol Bioeng 2021; 118:2092-2104. [PMID: 33620084 DOI: 10.1002/bit.27722] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 02/18/2021] [Indexed: 12/24/2022]
Abstract
Syngas fermentation is a potential player for future emission reduction. The first demonstration and commercial plants have been successfully established. However, due to its novelty, development of syngas fermentation processes is still in its infancy, and the need to systematically unravel and understand further phenomena, such as substrate toxicity as well as gas transfer and uptake rates, still persists. This study describes a new online monitoring device based on the respiration activity monitoring system for cultivation of syngas fermenting microorganisms with gaseous substrates. The new device is designed to online monitor the carbon dioxide transfer rate (CO2 TR) and the gross gas transfer rate during cultivation. Online measured data are used for the calculation of the carbon monoxide transfer rate (COTR) and hydrogen transfer rate (H2 TR). In cultivation on pure CO and CO + H2 , CO was continuously limiting, whereas hydrogen, when present, was sufficiently available. The maximum COTR measured was approximately 5 mmol/L/h for pure CO cultivation, and approximately 6 mmol/L/h for cultivation with additional H2 in the gas supply. Additionally, calculation of the ratio of evolved carbon dioxide to consumed monoxide, similar to the respiratory quotient for aerobic fermentation, allows the prediction of whether acetate or ethanol is predominantly produced. Clostridium ljungdahlii, a model acetogen for syngas fermentation, was cultivated using only CO, and CO in combination with H2 . Online monitoring of the mentioned parameters revealed a metabolic shift in fermentation with sole CO, depending on COTR. The device presented herein allows fast process development, because crucial parameters for scale-up can be measured online in small-scale gas fermentation.
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Affiliation(s)
- Marcel Mann
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
| | - Aline Hüser
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
| | - Benjamin Schick
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
| | - Robert Dinger
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
| | - Katharina Miebach
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
| | - Jochen Büchs
- RWTH Aachen University, AVT-Biochemical Engineering, Aachen, Germany
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Vees CA, Neuendorf CS, Pflügl S. Towards continuous industrial bioprocessing with solventogenic and acetogenic clostridia: challenges, progress and perspectives. J Ind Microbiol Biotechnol 2020; 47:753-787. [PMID: 32894379 PMCID: PMC7658081 DOI: 10.1007/s10295-020-02296-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 07/20/2020] [Indexed: 12/11/2022]
Abstract
The sustainable production of solvents from above ground carbon is highly desired. Several clostridia naturally produce solvents and use a variety of renewable and waste-derived substrates such as lignocellulosic biomass and gas mixtures containing H2/CO2 or CO. To enable economically viable production of solvents and biofuels such as ethanol and butanol, the high productivity of continuous bioprocesses is needed. While the first industrial-scale gas fermentation facility operates continuously, the acetone-butanol-ethanol (ABE) fermentation is traditionally operated in batch mode. This review highlights the benefits of continuous bioprocessing for solvent production and underlines the progress made towards its establishment. Based on metabolic capabilities of solvent producing clostridia, we discuss recent advances in systems-level understanding and genome engineering. On the process side, we focus on innovative fermentation methods and integrated product recovery to overcome the limitations of the classical one-stage chemostat and give an overview of the current industrial bioproduction of solvents.
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Affiliation(s)
- Charlotte Anne Vees
- Institute of Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria
| | - Christian Simon Neuendorf
- Institute of Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria
| | - Stefan Pflügl
- Institute of Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, Technische Universität Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria
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Geinitz B, Hüser A, Mann M, Büchs J. Gas Fermentation Expands the Scope of a Process Network for Material Conversion. CHEM-ING-TECH 2020. [DOI: 10.1002/cite.202000086] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Bertram Geinitz
- RWTH Aachen University, AVT – Biochemical Engineering Forckenbeckstraße 51 52074 Aachen Germany
| | - Aline Hüser
- RWTH Aachen University, AVT – Biochemical Engineering Forckenbeckstraße 51 52074 Aachen Germany
| | - Marcel Mann
- RWTH Aachen University, AVT – Biochemical Engineering Forckenbeckstraße 51 52074 Aachen Germany
| | - Jochen Büchs
- RWTH Aachen University, AVT – Biochemical Engineering Forckenbeckstraße 51 52074 Aachen Germany
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27
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Affiliation(s)
- Cláudio J. R. Frazão
- TU Dresden Institute of Natural Materials Technology Bergstraße 120 01062 Dresden Germany
| | - Thomas Walther
- TU Dresden Institute of Natural Materials Technology Bergstraße 120 01062 Dresden Germany
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28
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Mei M, Hébrard G, Dietrich N, Loubière K. Gas-liquid mass transfer around Taylor bubbles flowing in a long, in-plane, spiral-shaped milli-reactor. Chem Eng Sci 2020. [DOI: 10.1016/j.ces.2020.115717] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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