The dissimilarity of antibiotic and quorum sensing inhibitor on activated sludge nitrification system: Microbial communities and antibiotic resistance genes

Cascading microbial regulation of autochthonous DOM stability in a picocyanobacteria-dominated estuarine reservoir

Estuaries serve as vital interfaces in the global carbon cycle by mediating land-ocean exchange and regulating dissolved organic matter (DOM) dynamics. However, the role of microbial communities in regulating autochthonous DOM under phosphorus-limited estuarine conditions remains insufficiently understood. This study explored the biogeochemical parameters, inorganic carbon dynamics, DOM optical properties, and algal-bacterial community composition in a picocyanobacteria-dominated estuarine reservoir subject to seasonal salinity and nutrient fluctuations. Samples were classified into three groups based on DOM compositional features: pristine autochthonous group (PG), high allochthonous group (HG), and balanced group (BG). In BG, picocyanobacteria, particularly Cyanobium PCC-6307, promoted the accumulation of labile tryptophan-like DOM (component C4), which was associated with the lowest autochthonous DOM stability ratios (AuSR). In HG, terrestrial runoff led to a decline in C4 and an increase in DOM stability, reflecting rapid microbial degradation and partial transformation. In BG, colder temperatures and elevated microbial α-diversity facilitated the conversion of DOM into more humified forms, as indicated by higher proportions of humic-like components and AuSR. Key microbial taxa showed substrate-specific metabolic traits related to amino acid, polysaccharide, and one-carbon compound processing. By integrating DOM-defined groupings, fluorescence-derived stability metrics, and microbial marker analysis, this study reveals a sequential cascade of microbial regulation in DOM production, transformation, and stabilization. These findings offer the first detailed evidence of such processes in a phosphorus-limited estuarine system and provide a new framework for linking DOM properties with microbial ecological functions in dynamic aquatic environments.

Better ecosystem resistibility but with severer risk deriving from potential pathogens and antibiotic resistances in marine sediments adjacent to Yellow River estuary under oil contamination

Estuaries, a vital coastal system, exhibit extensive anthropogenic impacts on their ecological integrity. However, little is known about microbial responses and associated risks in marine sediments around Yellow River estuary (YRE) at an outbreak of oil pollution. Herein, via molecular sequencing and physicochemical experiments, the characteristics of microbiota, potential pathogens and antibiotic resistance were comprehensively investigated in sediments collected from three areas with varying distances to YRE at diesel-polluted microcosms. Specifically, higher stability, stronger stochasticity-dominated assembly processes and more abundant petroleum metabolic pathways were observed in bacterial community nearest to the estuary (YE). Furthermore, an enrichment of potential pathogens and antibiotics resistance genes (ARGs), those mainly related to multidrug-resistance efflux pumps, as well as the accelerated dissemination of ARGs, all were found across all regions along the pollution time, especially those in YE. Several core pathogens (e.g., Pseudomonas) were simultaneously related with multidrug resistances and their transmissions, and a more robust relationship among them was found in YE. Culturable experiments demonstrated numerous potential pathogens were capable of efficiently degrading oil contaminants. A global investigation revealed the sediment pathogens with oil degradation potential were widely distributed in shallow- and deep-sea water bodies, with higher abundance in coastal zones, suggesting extensive pathogenic risks from these bacteria also in oil-polluted aquatic environments. Altogether, the findings unmask the sound resistibility but with serious hazard of potential pathogens and antibiotic resistance in oil-contaminated sediment ecosystem nearest to YRE, and offer novel insights and potential targets for estuarine risk assessment and control.

Antibiotic resistance reduction mechanisms during thermophilic anaerobic digestion of microalgae-bacteria aggregates

Microalgae-bacteria-based systems are an emerging and promising approach for wastewater treatment plants (WWTP), having nutrient and antibiotic resistance removal comparable to conventional technologies. Still, antibiotic-resistance genes and bacteria (ARG and ARB) can proliferate in microalga-bacteria aggregates (MABA), a concern to control. Different temperature regimes of MABA continuous anaerobic digestion (AD), thermophilic (55 °C), and mesophilic (35 °C) were evaluated in this study as a strategy to eliminate ARB and ARGs. Plate counting techniques and metagenomic-based analysis revealed that thermophilic temperature had a better performance, achieving ARB log reductions of 1.1 to 1.7 for various antibiotics and significantly reduced ARG abundance up to 19.5 ± 0.8 ppm. The microbiome selection, the mobilome restriction, and directed functionality to thermal stress resistance were the main mechanisms responsible for resistome reduction at thermophilic conditions. Thermophilic AD effectively manages antibiotic resistance in microalgae-bacteria aggregates, which has important implications for wastewater treatment and reduces environmental risks.

Reducing tetracycline resistance genes in wheat soil using natural quorum sensing inhibitors: A new approach for mitigating antibiotic resistance gene contamination

The distribution and transmission of antibiotic resistance genes (ARGs) in agricultural soils constitute a significant threat to food safety and human health. Natural quorum sensing inhibitors (QSIs), with advantages such as low plant toxicity and low application costs, present a potential approach for mitigating ARG contamination by targeting bacterial quorum sensing systems. This study explored the impacts and mechanisms of three natural QSIs (vanillin, catechin, and tannin) on the abundance of tetracycline resistance genes (TRGs) in both rhizosphere and non-rhizosphere soils. Results illustrated a notable reduction in TRG abundance across three natural QSI treatments, with catechin displaying the most pronounced effect in the rhizosphere soil. Furthermore, the application of natural QSIs had a significant influence on the bacterial community structure and population dynamics, particularly evident in the alterations induced by catechin on bacterial interactions within the soil ecosystem. Natural QSIs inhibited the production of N-acyl homoserine lactone (AHL) signaling molecules. The primary environmental factors driving changes in bacterial community were identified as pH and NO3--N content. Through mechanisms involving the modulations of AHL concentrations and soil environmental factors, natural QSIs were found to impact bacterial population, ultimately leading to a decrease in TRG abundance. Importantly, the application of natural QSIs did not exhibit adverse effects on plant phenotypic traits. These findings serve as a useful reference for implementing natural QSIs to effectively control soil ARG contamination.

Antibiotic biotransformation potential of biofilms in streams receiving treated wastewater effluent: Biodegradation mechanism and bacterial community structure

Antibiotics are a widely distributed and effective antibacterial agents. Human medical treatment and livestock aquaculture are major sources of antibiotics in aquatic ecosystems, potentially damaging the biofilms that are the foundation of stream food webs. In this study, we conducted antibiotic biotransformation experiments using biofilms cultured in streams upstream and downstream of a wastewater treatment plant outlet to distinguish different fate processes of antibiotics in biofilms. It was found that stream biofilms have biotransformation potential mainly for specific sulfonamide antibiotics. Flavobacterium and Dyadobacter were identified to be associated with biofilm biotransformation of antibiotics by 16S rDNA sequencing. Besides, microorganisms released from treated wastewater integrated into downstream biofilm communities, thereby enhancing the biotransformation potential of downstream biofilm communities compared to upstream biofilm. These findings enriched the understanding of the biotransformation of micropollutants by stream biofilms, and to thus promote the development of biofilm-based monitoring technologies.

Customizable Three-Dimensional Printed Zerovalent Iron: An Efficient and Reusable Fenton-like Reagent for Florfenicol Degradation

Zerovalent iron (Fe0)-based Fenton-like technology has great potential for treating recalcitrant organic pollutants (ROPs) in wastewater. However, rapidly and precisely manufacturing Fe0-based materials with the desired geometries is challenging. Herein, novel three-dimensional printed Fe0 (3DP-Fe0) and bimetallic 3DP-Ni/Fe0 were customized by 3D printing for efficient Fenton-like degradation of florfenicol (FLO), a typical antibiotic in wastewater. 3DP-Ni/Fe0 with hydrogen peroxide (H2O2) exhibited superior reactivity toward FLO than 3DP-Fe0, generating hydroxyl radicals (·OH) and atomic hydrogen to achieve >90% dehalogenation and >70% total organic carbon removal within 10 min. The resulting degradation intermediates possessed lower antibacterial activity than FLO and did not cause resistance gene proliferation in activated sludge. The Fenton-like activity of 3DP-Ni/Fe0 was similar across different shapes but increased with increasing porosity and size. Compared with powdered Ni/Fe0, 3DP-Ni/Fe0 exhibited faster electron transfer during Fe(II)/Fe(III) cycling, which increased the utilization efficiency of dissolved Fe2+ and H2O2 for ·OH production. Moreover, 3DP-Ni/Fe0 could be reused >150 times, 5-fold more than powdered Ni/Fe0, owing to its lower metal ion release and Fe0 depletion. 3DP-Ni/Fe0 with H2O2 can also efficiently remove chemical oxygen demand from real wastewater and other ROPs (e.g., acetaminophen, carbamazepine, thiamphenicol, and tetrabromobisphenol A).

Impact of Combined Pollution of Ciprofloxacin and Copper on the Diversity of Archaeal Communities and Antibiotic-Resistance Genes

This study aimed to explore the response of archaeal communities and antibiotic-resistance genes (ARGs) to ciprofloxacin (CIP, 0.05-40 mg/L) and copper (Cu, 3 mg/L) combined pollution during stress- and post-effect periods in an activated sludge system. With the increase in the CIP concentration, the diversity of archaea decreased, but the richness increased under the stress of 10 mg/L CIP. Under stress and post effects, the change in unknown archaeal community structure was more significant than that of the known archaea. The relative abundance of unknown archaea was significantly reduced with the increase in CIP concentration. Meanwhile, there were certain archaea that belonged to abundant and rare taxa with different resistance and recovery characteristics. Among them, Methanosaeta (49.15-83.66%), Methanoculleus (0.11-0.45%), and Nitrososphaera (0.03-0.36%) were the typical resistant archaea to combined pollution. And the resistance of the abundant taxa to combined pollution was significantly higher than that of the rare taxa. Symbiotic and competitive relationships were observed between the known and the unknown archaea. The interactions of abundant known taxa were mainly symbiotic relationships. While the rare unknown taxa were mainly competitive relationships in the post-effect period. Rare archaea showed an important ecological niche under the stress-effect. Some archaea displayed positive correlation with ARGs and played important roles as potential hosts of ARGs during stress- and post-periods. Methanospirillum, Methanosphaerula, Nitrososphaera and some rare unknown archaea also significantly co-occurred with a large number of ARGs. Overall, this study points out the importance of interactions among known and unknown archaeal communities and ARGs in a wastewater treatment system under the stress of antibiotics and heavy metal combined pollution.

Effects of antibiotics on microbial nitrogen cycling and N2O emissions: A review

Sulfonamides, quinolones, tetracyclines, and macrolides are the most prevalent classes of antibiotics used in both medical treatment and agriculture. The misuse of antibiotics leads to their extensive dissemination in the environment. These antibiotics can modify the structure and functionality of microbial communities, consequently impacting microbial-mediated nitrogen cycling processes including nitrification, denitrification, and anammox. They can change the relative abundance of nirK/norB contributing to the emission of nitrous oxide, a potent greenhouse gas. This review provides a comprehensive examination of the presence of these four antibiotic classes across different environmental matrices and synthesizes current knowledge of their effects on the nitrogen cycle, including the underlying mechanisms. Such an overview is crucial for understanding the ecological impacts of antibiotics and for guiding future research directions. The presence of antibiotics in the environment varies widely, with significant differences in concentration and type across various settings. We conducted a comprehensive review of over 70 research articles that compare various aspects including processes, antibiotics, concentration ranges, microbial sources, experimental methods, and mechanisms of influence. Antibiotics can either inhibit, have no effect, or even stimulate nitrification, denitrification, and anammox, depending on the experimental conditions. The influence of antibiotics on the nitrogen cycle is characterized by dose-dependent responses, primarily inhibiting nitrification, denitrification, and anammox. This is achieved through alterations in microbial community composition and diversity, carbon source utilization, enzyme activities, electron transfer chain function, and the abundance of specific functional enzymes and antibiotic resistance genes. These alterations can lead to diminished removal of reactive nitrogen and heightened nitrous oxide emissions, potentially exacerbating the greenhouse effect and related environmental issues. Future research should consider diverse reaction mechanisms and expand the scope to investigate the combined effects of multiple antibiotics, as well as their interactions with heavy metals and other chemicals or organisms.

Effect and microbial mechanism of pharmaceutical and personal care product exposure on partial nitrification process and nitrous oxide emission

This study focused on the short- and long-term exposure of pharmaceutical and personal care products (PPCPs) to the partial nitrification process and nitrous oxide emission. The corresponding microbial mechanisms were also explored. The results revealed a concentration-dose effect on the partial nitrification process. Moreover, the PPCP concentration of ≥2 μg/L featured inhibitory effects on the process. The solo effect of PPCP on the partial nitrification process was analyzed through microcosmic experiments, and the results revealed significant variations in PN. A dose-effect relationship existed between the PPCP concentration and N2O emission intensity. After exposure to PPCPs, the N2O emission released during the partial nitrification process was significantly reduced. Different PPCPs featured various effects in mitigating N2O emissions. Low PPCP concentrations led to a reduction in the richness and diversity of microbes, but their community structure remained significantly unchanged. High PPCP concentrations (≥5 μg/L) resulted in increased species richness and diversity, but their microbial community composition was significantly affected. The function prediction and nitrogen metabolic pathway analysis indicated that PPCP exposure led to the inhibition of the ammonia oxidation process. However, all genes encoding denitrification enzymes were upregulated. The microorganisms in the microbial community featured modular structural properties and wide synergistic relationships between genera. This study provides valuable insights into the effect of PPCP exposure on the particle nitrification process and corresponding changes in the microbial community.

Zinc/carbon nanomaterials inhibit antibiotic resistance genes by affecting quorum sensing and microbial community in cattle manure production

This study used metagenomic sequencing to examine the effects of carbon-based zinc oxide nanoparticles (CZnONPs) and graphene-based zinc oxide nanoparticles (GZnONPs) on quorum sensing (QS), antibiotic resistance genes (ARGs) and microbial community changes during cattle manure production. The manure zinc content was significantly reduced in GZnONPs group. In the QS pathway, the autoinducer gene increases significantly in Control group, while the transporter and repressor genes experience a substantial increase in CZnONPs group. These results contributed to the significantly decreased the abundance of ARGs in GZnONPs group. The co-occurrence network analysis revealed a correlation between core ARGs and QS-related KEGG Orthology or ARGs' hosts, indicating that the selective pressure of zinc influences microbial QS, forming a unique ARG pattern in in vivo anaerobic fermentation. These findings suggest that implementing nutritional regulation in farming practices can serve as a preventive measure to mitigate the potential transmission of ARGs resulting from livestock waste.

Microplastic and antibiotic proliferated the colonization of specific bacteria and antibiotic resistance genes in the phycosphere of Chlorella pyrenoidosa

Despite that the phycosphere was an important niche for the proliferation of various bacteria and antibiotic resistance genes (ARGs), the factors that affect the colonization of bacteria and ARGs in the phycosphere are still poorly understood. In this study, sterile C. pyrenoidosa co-cultured with bacteria from different sources and provided with polylactic acid microplastic (PLA MPs) and florfenicol (FF) was examined. Results showed that bacteria promoted the growth of C. pyrenoidosa and increased its chlorophyll contents. PLA MPs and FF also showed positive effects on C. pyrenoidosa due to the "Hormesis effect". The occurrence of bacteria in the phycosphere was significantly affected by their sources and the addition of PLA MPs and FF. However, the core microbiota of the phycosphere in each group was similar. Additionally, PLA MPs and FF proliferated the abundance of phenicol-related ARGs (especially floR) and mobile genetic elements in the phycosphere. Notably, PLA MPs and FF enhanced the abundance of Flavobacterium, a potential host of ARGs. Our results highlighted the important roles of bacteria in microalgae and demonstrated exogenous pollutants could promote the spread of ARGs between surrounding environments and the phycosphere, which provide new insights into the occurrence and spread of ARGs in the phycosphere.

Effect of antibiotic cocktail exposure on functional disturbance of nitrifying microbiome

The present study quantitatively determined the degree and type of functional disturbance in the nitrifying microbiome caused by exposure to a single oxytetracycline (OTC) and a two-antibiotic mixture containing OTC and sulfamethoxazole (SMX). While the single antibiotic had a pulsed disturbance on nitritation that was recoverable within three weeks, the antibiotic mixture caused a more significant pulsed disturbance on nitritation and a potential press disturbance on nitratation that was not recoverable for over five months. Bioinformatic analysis revealed significant perturbations for both canonical nitrite-oxidizing (Nitrospira defluvii) and potential complete ammonium-oxidizing (Ca. Nitrospira nitrificans) populations that were strongly associated with the press perturbation on nitratation. In addition to this functional disturbance, the antibiotic mixture reduced the biosorption of OTC and altered its biotransformation pathways, resulting in different transformation products compared with those produced when OTC was treated as a single antibiotic. Collectively, this work elucidated how the antibiotic mixture can affect the degree, type, and duration of the functional disturbance on nitrifying microbiome and offer new insights into the environmental consequences of antibiotic residues (e.g., their fate, transformation, and ecotoxicity) when present as an antibiotic mixture rather than single antibiotics.

Quorum sensing responses of activated sludge to free nitrous acid: Zoogloea deformation, AHL redistribution, and microbiota acclimatization

Free nitrous acid (FNA) has been widely employed for improvement of wastewater management by altering sludge characteristic and function based on its polymer lysing and biocidal capacity. Sludge characteristic and function are commonly considered as the joint consequence of microbial individual behaviors and quorum sensing (QS) involved collective behaviours, but the role of the latter in FNA treatment was still as-yet-unidentified and addressed in this research. The results of sludge morphology and component characterized FNA-induced zoogloea deformation, including inner cell exposure, half of extracellular polymeric substances (EPS) reduction and adsorption site depletion. During zoogloea deformation, four acyl-homoserine lactones (AHLs), including C4-HSL, C8-HSL, C10-HSL and C12-HSL, transferred inward of microbiota, and their total contents reduced by 66% because of depressed signal production, augmented decomposer and recognition. Transcriptome analysis revealed that differentially expressed QS driven by AHL redistribution facilitated microbiota acclimatization including cellular motility and hydrolase synthesis for EPS consumption. Boosted motility may favor escaping from stress spot and moderating intercellular acidity based on cell motility test. Feasible EPS consumption provided nutrition for heterotrophic metabolisms testified by pure culture with EPS as sole nutrition. Our work thus comprehensively revealed QS behaviours responding to FNA and deepened the understanding to FNA treatment performance in wastewater management.

Nanoparticles and antibiotics stress proliferated antibiotic resistance genes in microalgae-bacteria symbiotic systems

The comprehensive effect of exogenous pollutants on the dispersal and abundance of antibiotic-resistance genes (ARGs) in the phycosphere, bacterial community and algae-bacteria interaction remains poorly understood. We investigated community structure and abundance of ARGs in free-living (FL) and particle-attached (PA) bacteria in the phycosphere under nanoparticles (silver nanoparticles (AgNPs) and hematite nanoparticles (HemNPs)) and antibiotics (tetracycline and sulfadiazine) stress using high-throughput sequencing and real-time quantitative PCR. Meanwhile, the intrinsic connection of algae-bacteria interaction was explored by transcriptome and metabolome. The results showed that the relative abundance of sulfonamide and tetracycline ARGs in PA and FL bacteria increased 103-129 % and 112-134 %, respectively, under combined stress of nanoparticles and antibiotics. Antibiotics have a greater effect on ARGs than nanoparticles at environmentally relevant concentrations. Proteobacteria, Firmicutes, and Bacteroidetes, as the primary potential hosts of ARGs, were the dominant phyla. Lifestyle, i.e., PA and FL, significantly determined the abundance of ARGs and bacterial communities. Moreover, algae can provide bacteria with nutrients (carbohydrates and amino acids), and can also produce antibacterial substances (fatty acids). This algal-bacterial interaction may indirectly affect the distribution and abundance of ARGs. These findings provide new insights into the distribution and dispersal of ARGs in microalgae-bacteria symbiotic systems.

Fates of antibiotic resistance genes and bacterial/archaeal communities of activated sludge under stress of copper: Gradient increasing/decreasing exposure modes

Effect of copper (Cu) on antibiotic resistance genes (ARGs) and bacterial/archaeal community of activated sludge under gradient increasing (0.5-10 mg/L) or decreasing exposure (10-0.5 mg/L) modes was explored. Here, 29 genes were detected among 48 selected ARGs and mobile gene elements (MGEs). Two exposure modes showed dissimilar effects on ARGs and distribution was more affected by environmental concentrations of Cu, which promoted transmission of ARGs (multiple drug resistance and sulfonamide). Cellular protection was main resistance mechanism, which was less inhibited than efflux pumps. The tnpA-02, as main MGE, interacted closely with ARGs (sul2, floR, etc.). Gradient increasing exposure mode had more effects on bacterial/archaeal structure and composition. Bacteria were main hosts for specific ARGs and tnpA-02, while archaea carried multiple ARGs (cmx(A), adeA, etc.), and bacteria (24.24 %) contributed more to changes of ARGs than archaea (19.29 %). This study clarified the impacts of Cu on the proliferation and transmission of ARGs.

Distribution, sources, and potential risks of antibiotic resistance genes in wastewater treatment plant: A review

Irrational use of antibiotics produces a large number of antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs). Wastewater treatment plants (WWTPs) act as important sources and sinks of ARGs, and play an important role in their generation, treatment, and dissemination. This study summarizes the types, concentrations, and factors of ARGs in WWTPs, investigates the sources of ARGs in wastewater, compares the removal efficiencies of different treatment processes on ARGs, and analyzes the potential risks of ARGs accumulation in effluent, sludge and their emission into the air. The results show that the main ARGs detected in the influent of WWTPs are the genes resistant to macrolides (ermB, ermF), tetracyclines (tetW, tetA, tetC), sulfonamides (sul1, sul2), and β-lactams (bla_OXA, bla_TEM). The concentrations of ARGs in the influent of the WWTPs are 2.23 × 10²-3.90 × 10⁹ copies/mL. Wastewater quality and microbial community are the dominant factors that affect the distribution characteristics of ARGs. The accumulation of ARGs in effluent, sludge, and aerosols pose potential risks to the regional ecological environment and human health. Based on these results, research trends with respect to ARGs in WWTPs are also prospected.

Effect of polytetrafluoroethylene nanoplastics on combined inhibition of ciprofloxacin and bivalent copper on nitrogen removal, sludge activity and microbial community in sequencing batch reactor

The work aimed to explore effects of polytetrafluoroethylene nanoplastics on joint inhibitions of ciprofloxacin and bivalent copper on the nitrogen removal in a sequencing batch reactor and its potential mechanisms. The addition of bivalent copper and/or ciprofloxacin reduced the ammonia nitrogen elimination rate with or without polytetrafluoroethylene nanoplastics. Adsorption kinetics and thermodynamics showed the binary bivalent copper and ciprofloxacin promoted their adsorptions by polytetrafluoroethylene nanoplastics. Polytetrafluoroethylene nanoplastics enhanced combined toxicities of ciprofloxacin and bivalent copper to sludge activities and microbial community involved into nitrification and denitrification due to the adsorption of ciprofloxacin and bivalent copper by polytetrafluoroethylene nanoplastics. With or without polytetrafluoroethylene nanoplastics, bivalent copper and/or ciprofloxacin caused more obvious level changes of protein than polysaccharide. This study provides novel insights for understanding the effect of combined heavy metals and antibiotics on the performance in a sequencing batch reactor with the nanoplastics stress.