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Ren H, Li D, Jing F, Zhang X, Tian X, Xie S, Zhang E, Wang R, He H, He Y, Xue Y, Liu C, Sun Y, Cheng W. LASF: a local adaptive segmentation framework for coronary angiogram segments. Health Inf Sci Syst 2025; 13:19. [PMID: 39881813 PMCID: PMC11772642 DOI: 10.1007/s13755-025-00339-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 01/10/2025] [Indexed: 01/31/2025] Open
Abstract
Coronary artery disease (CAD) remains the leading cause of death globally, highlighting the critical need for accurate diagnostic tools in medical imaging. Traditional segmentation methods for coronary angiograms often struggle with vessel discontinuity and inaccuracies, impeding effective diagnosis and treatment planning. To address these challenges, we developed the Local Adaptive Segmentation Framework (LASF), enhancing the YOLOv8 architecture with dilation and erosion algorithms to improve the continuity and precision of vascular image segmentation. We further enriched the ARCADE dataset by meticulously annotating both proximal and distal vascular segments, thus broadening the dataset's applicability for training robust segmentation models. Our comparative analyses reveal that LASF outperforms well-known models such as UNet and DeepLabV3Plus, demonstrating superior metrics in precision, recall, and F1-score across various testing scenarios. These enhancements ensure more reliable and accurate segmentation, critical for clinical applications. LASF represents a significant advancement in the segmentation of vascular images within coronary angiograms. By effectively addressing the common issues of vessel discontinuity and segmentation accuracy, LASF stands to improve the clinical management of CAD, offering a promising tool for enhancing diagnostic accuracy and patient outcomes in medical settings.
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Affiliation(s)
- Hao Ren
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
- Institute for Healthcare Artificial Intelligence Application, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, 510317 China
- Guangzhou Key Laboratory of Smart Home Ward and Health Sensing, Guangzhou, 510317 China
| | - Dongxiao Li
- Hainan International College, Minzu University of China, Hainan, 572423 China
| | - Fengshi Jing
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
- School of Medicine, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA
| | - Xinyue Zhang
- Hainan International College, Minzu University of China, Hainan, 572423 China
| | - Xingyuan Tian
- Hainan International College, Minzu University of China, Hainan, 572423 China
| | - Songlin Xie
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Erfu Zhang
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Ruining Wang
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Han He
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Yinpan He
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Yake Xue
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Chi Liu
- Faculty of Data Science, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
| | - Yu Sun
- Department of Cardiac Intensive Care Unit, Cardiovascular Hospital, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, 510317 China
| | - Weibin Cheng
- Institute for Healthcare Artificial Intelligence Application, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, 510317 China
- Guangzhou Key Laboratory of Smart Home Ward and Health Sensing, Guangzhou, 510317 China
- Department of Data Science, College of Computing, City University of Hong Kong, Kowloon, Hong Kong Special Administrative Region China
- GD2H-CityUM Joint Research Centre, City University of Macau, Taipa, 999078 Macao Special Administrative Region China
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Yu H, Gao H, Li G, Qin Z, Jia D, Wang G, Wang S. TSNet: Vessel segmentation with sequential frame temporal information in coronary angiography. Comput Med Imaging Graph 2025; 123:102540. [PMID: 40187115 DOI: 10.1016/j.compmedimag.2025.102540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2024] [Revised: 03/21/2025] [Accepted: 03/24/2025] [Indexed: 04/07/2025]
Abstract
OBJECTIVE When using single-frame images for coronary vessel segmentation, the small size and complex structure of the vessels often lead to over-segmentation and mis-segmentation. Additionally, limited information from low-quality images result in disrupting the vascular topology. To address this, we introduce temporal information from coronary angiography sequences to aid in segmentation and improve accuracy. METHODS We establish a dataset SqCS specialized for coronary angiography sequence segmentation and propose a time series-based coronary angiography segmentation network TSNet. Specifically, our proposed TSNet is a multi-input single-output end-to-end U-shaped network that utilizes multiple encoders for simultaneous extraction of spatial features from input sequence frames. It incorporates an edge enhancement method for segmented frames and employs the Temporal and Spatial Attention Unit (TSAU) for refined extraction of temporal and spatial information and fusion of multi-frame features. Our code is publicly available at https://github.com/huigao-II/TSNet. RESULTS We validated TSNet on our SqCS dataset, achieving a Dice score of 0.8966, Acc of 0.9906, IoU of 0.8127, clDice of 0.9354, VCA of 1.9027, BIOU of 0.3565 and VCA of 1.9072. CONCLUSION Our method enhances pixel-wise accuracy while addressing vessel discontinuities in low-contrast regions common in single-frame segmentation. It preserves vascular topology and significantly improves edge accuracy. SIGNIFICANCE Our SqCS dataset provides a foundation for sequence-based coronary angiography vessel segmentation research. The segmentation model trained using our method lays the groundwork for accurate clinical diagnosis and treatment decisions in coronary artery disease.
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Affiliation(s)
- Hui Yu
- Department of Biomedical Engineering, Tianjin University, China
| | - Hui Gao
- Department of Biomedical Engineering, Tianjin University, China
| | - Guang Li
- School of Precision Instrument and Opto-Electronics Engineering, Tianjin University, China
| | - Zewei Qin
- Department of Biomedical Engineering, Tianjin University, China
| | - Dagong Jia
- School of Precision Instrument and Opto-Electronics Engineering, Tianjin University, China
| | - Guangpu Wang
- Department of Biomedical Engineering, Tianjin University, China.
| | - Shuo Wang
- Department of Biomedical Engineering, Tianjin University, China.
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Gil-Rios MA, Cruz-Aceves I, Hernandez-Aguirre A, Hernandez-Gonzalez MA, Solorio-Meza SE. Improving Automatic Coronary Stenosis Classification Using a Hybrid Metaheuristic with Diversity Control. Diagnostics (Basel) 2024; 14:2372. [PMID: 39518340 PMCID: PMC11545375 DOI: 10.3390/diagnostics14212372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 10/17/2024] [Accepted: 10/18/2024] [Indexed: 11/16/2024] Open
Abstract
This study proposes a novel Hybrid Metaheuristic with explicit diversity control, aimed at finding an optimal feature subset by thoroughly exploring the search space to prevent premature convergence. Background/Objectives: Unlike traditional evolutionary computing techniques, which only consider the best individuals in a population, the proposed strategy also considers the worst individuals under certain conditions. In consequence, feature selection frequencies tend to be more uniform, decreasing the probability of premature convergent results and local-optima solutions. Methods: An image database containing 608 images, evenly balanced between positive and negative coronary stenosis cases, was used for experiments. A total of 473 features, including intensity, texture, and morphological types, were extracted from the image bank. A Support Vector Machine was employed to classify positive and negative stenosis cases, with Accuracy and the Jaccard Coefficient used as performance metrics. Results: The proposed strategy achieved a classification rate of 0.92 for Accuracy and 0.85 for the Jaccard Coefficient, obtaining a subset of 16 features, which represents a discrimination rate of 0.97 from the 473 initial features. Conclusions: The Hybrid Metaheuristic with explicit diversity control improved the classification performance of coronary stenosis cases compared to previous literature. Based on the achieved results, the identified feature subset demonstrates potential for use in clinical practice, particularly in decision-support information systems.
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Affiliation(s)
- Miguel-Angel Gil-Rios
- Universidad Área Académica de Tecnologías de la Información, Universidad Tecnológica de León, Blvd. Universidad Tecnológica 225, Col. San Carlos, León 37670, Mexico;
| | - Ivan Cruz-Aceves
- CONAHCYT, Consejo Nacional de Humanidades, Ciencia y Tecnología (CONAHCYT), Centro de Investigación en Matemáticas (CIMAT), A.C., Jalisco S/N, Col. Valenciana, Guanajuato 36000, Mexico
| | - Arturo Hernandez-Aguirre
- Centro de Investigación en Matemáticas (CIMAT), A.C., Jalisco S/N, Col. Valenciana, Guanajuato 36000, Mexico;
| | - Martha-Alicia Hernandez-Gonzalez
- Unidad Médica de Alta Especialidad (UMAE), Hospital de Especialidades No.1. Centro Médico Nacional del Bajio, Instituto Mexicano del Seguro Social (IMSS), Blvd. Adolfo López Mateos S/N, León 37150, Mexico;
| | - Sergio-Eduardo Solorio-Meza
- División de Ciencias e Ingenierías, Universidad de Guanajuato, Campus León, Loma del Bosque 103, Col. Lomas del Campestre, León 37150, Mexico;
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Shakeri S, Almasganj F. X-ray coronary angiography background subtraction by adaptive weighted total variation regularized online RPCA. Phys Med Biol 2024; 69:215024. [PMID: 39357532 DOI: 10.1088/1361-6560/ad8293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 10/01/2024] [Indexed: 10/04/2024]
Abstract
Objective.X-ray coronary angiograms (XCA) are widely used in diagnosing and treating cardiovascular diseases. Various structures with independent motion patterns in the background of XCA images and limitations in the dose of injected contrast agent have resulted in low-contrast XCA images. Background subtraction methods have been developed to enhance the visibility and contrast of coronary vessels in XCA sequences, consequently reducing the requirement for excessive contrast agent injections.Approach.The current study proposes an adaptive weighted total variation regularized online RPCA (WTV-ORPCA) method, which is a low-rank and sparse subspaces decomposition approach to subtract the background of XCA sequences. In the proposed method, the images undergo initial preprocessing using morphological operators to eliminate large-scale background structures and achieve image homogenization. Subsequently, the decomposition algorithm decomposes the preprocessed images into background and foreground subspaces. This step applies an adaptive weighted TV constraint to the foreground subspace to ensure the spatial coherency of the finally extracted coronary vessel images.Main results.To evaluate the effectiveness of the proposed background subtraction method, some qualitative and quantitative experiments are conducted on two clinical and synthetic low-contrast XCA datasets containing videos from 21 patients. The obtained results are compared with six state-of-the-art methods employing three different assessment criteria. By applying the proposed method to the clinical dataset, the mean values of the global contrast-to-noise ratio, local contrast-to-noise ratio, structural similarity index, and reconstruction error (RE) are obtained as5.976,3.173,0.987, and0.026, respectively. These criteria over the low-contrast synthetic dataset were4.851,2.942,0.958, and0.034, respectively.Significance.The findings demonstrate the superiority of the proposed method in improving the contrast and visibility of coronary vessels, preserving the integrity of the vessel structure, and minimizing REs without imposing excessive computational complexity.
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Affiliation(s)
- Saeid Shakeri
- Department of Biomedical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran
| | - Farshad Almasganj
- Department of Biomedical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran
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Zeng Y, Liu H, Hu J, Zhao Z, She Q. Pretrained subtraction and segmentation model for coronary angiograms. Sci Rep 2024; 14:19888. [PMID: 39191858 DOI: 10.1038/s41598-024-71063-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 08/23/2024] [Indexed: 08/29/2024] Open
Abstract
This study introduces a novel self-supervised learning method for single-frame subtraction and vessel segmentation in coronary angiography, addressing the scarcity of annotated medical samples in AI applications. We pretrain a U-Net model on a large dataset of unannotated coronary angiograms using an image-to-image translation framework, then fine-tune it on a limited set of manually annotated samples. The pretrained model excels at comprehensive single-frame subtraction, outperforming existing DSA methods. Fine-tuning with just 40 samples yields a Dice coefficient of 0.828 for vessel segmentation. On the public XCAD dataset, our model sets a new state-of-the-art benchmark with a Dice coefficient of 0.755, surpassing both unsupervised and supervised learning approaches. This method achieves robust single-frame subtraction and demonstrates that combining pretraining with minimal fine-tuning enables accurate coronary vessel segmentation with limited manual annotations. We successfully apply this approach to assist physicians in visualizing potential vascular stenosis sites during coronary angiography. Code, dataset, and a live demo will be available available at: https://github.com/newfyu/DeepSA .
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Affiliation(s)
- Yunjie Zeng
- Department of Cardiology, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
- Department of Cardiology, The Affiliated Dazu's Hospital of Chongqing Medical University, Chongqing, 402360, China
| | - Han Liu
- Department of Neurology, Jiulongpo District People's Hospital, Chongqing, 400050, China
| | - Juan Hu
- The First Affiliated Hospital of Chongqing Medical and Pharmaceutical College, Chongqing, 400060, China
| | - Zhengbo Zhao
- Department of Cardiology, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
| | - Qiang She
- Department of Cardiology, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China.
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Lashgari M, Choudhury RP, Banerjee A. Patient-specific in silico 3D coronary model in cardiac catheterisation laboratories. Front Cardiovasc Med 2024; 11:1398290. [PMID: 39036504 PMCID: PMC11257904 DOI: 10.3389/fcvm.2024.1398290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2024] [Accepted: 06/06/2024] [Indexed: 07/23/2024] Open
Abstract
Coronary artery disease is caused by the buildup of atherosclerotic plaque in the coronary arteries, affecting the blood supply to the heart, one of the leading causes of death around the world. X-ray coronary angiography is the most common procedure for diagnosing coronary artery disease, which uses contrast material and x-rays to observe vascular lesions. With this type of procedure, blood flow in coronary arteries is viewed in real-time, making it possible to detect stenoses precisely and control percutaneous coronary interventions and stent insertions. Angiograms of coronary arteries are used to plan the necessary revascularisation procedures based on the calculation of occlusions and the affected segments. However, their interpretation in cardiac catheterisation laboratories presently relies on sequentially evaluating multiple 2D image projections, which limits measuring lesion severity, identifying the true shape of vessels, and analysing quantitative data. In silico modelling, which involves computational simulations of patient-specific data, can revolutionise interventional cardiology by providing valuable insights and optimising treatment methods. This paper explores the challenges and future directions associated with applying patient-specific in silico models in catheterisation laboratories. We discuss the implications of the lack of patient-specific in silico models and how their absence hinders the ability to accurately predict and assess the behaviour of individual patients during interventional procedures. Then, we introduce the different components of a typical patient-specific in silico model and explore the potential future directions to bridge this gap and promote the development and utilisation of patient-specific in silico models in the catheterisation laboratories.
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Affiliation(s)
- Mojtaba Lashgari
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom
| | - Robin P. Choudhury
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, United Kingdom
| | - Abhirup Banerjee
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, United Kingdom
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Gil-Rios MA, Cruz-Aceves I, Hernandez-Aguirre A, Moya-Albor E, Brieva J, Hernandez-Gonzalez MA, Solorio-Meza SE. High-Dimensional Feature Selection for Automatic Classification of Coronary Stenosis Using an Evolutionary Algorithm. Diagnostics (Basel) 2024; 14:268. [PMID: 38337787 PMCID: PMC10855604 DOI: 10.3390/diagnostics14030268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 01/11/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024] Open
Abstract
In this paper, a novel strategy to perform high-dimensional feature selection using an evolutionary algorithm for the automatic classification of coronary stenosis is introduced. The method involves a feature extraction stage to form a bank of 473 features considering different types such as intensity, texture and shape. The feature selection task is carried out on a high-dimensional feature bank, where the search space is denoted by O(2n) and n=473. The proposed evolutionary search strategy was compared in terms of the Jaccard coefficient and accuracy classification with different state-of-the-art methods. The highest feature selection rate, along with the best classification performance, was obtained with a subset of four features, representing a 99% discrimination rate. In the last stage, the feature subset was used as input to train a support vector machine using an independent testing set. The classification of coronary stenosis cases involves a binary classification type by considering positive and negative classes. The highest classification performance was obtained with the four-feature subset in terms of accuracy (0.86) and Jaccard coefficient (0.75) metrics. In addition, a second dataset containing 2788 instances was formed from a public image database, obtaining an accuracy of 0.89 and a Jaccard Coefficient of 0.80. Finally, based on the performance achieved with the four-feature subset, they can be suitable for use in a clinical decision support system.
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Affiliation(s)
- Miguel-Angel Gil-Rios
- Tecnologías de Información, Universidad Tecnológica de León, Blvd. Universidad Tecnológica 225, Col. San Carlos, León 37670, Mexico;
| | - Ivan Cruz-Aceves
- CONACYT, Centro de Investigación en Matemáticas (CIMAT), A.C., Jalisco S/N, Col. Valenciana, Guanajuato 36000, Mexico
| | - Arturo Hernandez-Aguirre
- Departamento de Computación, Centro de Investigación en Matemáticas (CIMAT), A.C., Jalisco S/N, Col. Valenciana, Guanajuato 36000, Mexico;
| | - Ernesto Moya-Albor
- Facultad de Ingeniería, Universidad Panamericana, Augusto Rodin 498, Ciudad de México 03920, Mexico; (E.M.-A.); (J.B.)
| | - Jorge Brieva
- Facultad de Ingeniería, Universidad Panamericana, Augusto Rodin 498, Ciudad de México 03920, Mexico; (E.M.-A.); (J.B.)
| | - Martha-Alicia Hernandez-Gonzalez
- Unidad Médica de Alta Especialidad (UMAE), Hospital de Especialidades No. 1. Centro Médico Nacional del Bajio, IMSS, Blvd. Adolfo López Mateos esquina Paseo de los Insurgentes S/N, Col. Los Paraisos, León 37320, Mexico;
| | - Sergio-Eduardo Solorio-Meza
- División Ciencias de la Salud, Universidad Tecnológica de México, Campus León, Blvd. Juan Alonso de Torres 1041, Col. San José del Consuelo, León 37200, Mexico;
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Park J, Kweon J, Kim YI, Back I, Chae J, Roh JH, Kang DY, Lee PH, Ahn JM, Kang SJ, Park DW, Lee SW, Lee CW, Park SW, Park SJ, Kim YH. Selective ensemble methods for deep learning segmentation of major vessels in invasive coronary angiography. Med Phys 2023; 50:7822-7839. [PMID: 37310802 DOI: 10.1002/mp.16554] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Revised: 03/29/2023] [Accepted: 05/26/2023] [Indexed: 06/15/2023] Open
Abstract
BACKGROUND Invasive coronary angiography (ICA) is a primary imaging modality that visualizes the lumen area of coronary arteries for diagnosis and interventional guidance. In the current practice of quantitative coronary analysis (QCA), semi-automatic segmentation tools require labor-intensive and time-consuming manual correction, limiting their application in the catheterization room. PURPOSE This study aims to propose rank-based selective ensemble methods that improve the segmentation performance and reduce morphological errors that limit fully automated quantification of coronary artery using deep-learning segmentation of ICA. METHODS Two selective ensemble methods proposed in this work integrated the weighted ensemble approach with per-image quality estimation. The segmentation outcomes from five base models with different loss functions were ranked either by mask morphology or estimated dice similarity coefficient (DSC). The final output was determined by imposing different weights according to the ranks. The ranking criteria based on mask morphology were formulated from empirical insight to avoid frequent types of segmentation errors (MSEN), while the estimation of DSCs was performed by comparing the pseudo-ground truth generated from a meta-learner (ESEN). Five-fold cross-validation was performed with the internal dataset of 7426 coronary angiograms from 2924 patients, and prediction model was externally validated with 556 images of 226 patients. RESULTS The selective ensemble methods improved the segmentation performance with DSCs up to 93.07% and provided a better delineation of coronary lesion with local DSCs of up to 93.93%, outperforming all individual models. Proposed methods also minimized the chances of mask disconnection in the most narrowed regions to 2.10%. The robustness of the proposed methods was also evident in the external validation. Inference time for major vessel segmentation was approximately one-sixth of a second. CONCLUSION Proposed methods successfully reduced morphological errors in the predicted masks and were able to enhance the robustness of the automatic segmentation. The results suggest better applicability of real-time QCA-based diagnostic methods in routine clinical settings.
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Affiliation(s)
- Jeeone Park
- Department of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea
| | - Jihoon Kweon
- Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea
| | - Young In Kim
- Department of Medical Science, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea
| | - Inwook Back
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Jihye Chae
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Jae-Hyung Roh
- Department of Cardiology, Chungnam National University Sejong Hospital, Chungnam National University School of Medicine, Daejeon, South Korea
| | - Do-Yoon Kang
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Pil Hyung Lee
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Jung-Min Ahn
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Soo-Jin Kang
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Duk-Woo Park
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Seung-Whan Lee
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Cheol Whan Lee
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Seong-Wook Park
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Seung-Jung Park
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
| | - Young-Hak Kim
- Division of Cardiology, Department of Internal Medicine, Medical Center, University of Ulsan College of Medicine, Asan, Seoul, South Korea
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Hao Y, Ji A, Xing R, Zhu W, Jiang B, Jian Y, Chen H. Capillaries segmentation of NIR-II images and its application in ischemic stroke. Comput Biol Med 2022; 147:105742. [PMID: 35759993 DOI: 10.1016/j.compbiomed.2022.105742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 06/05/2022] [Accepted: 06/11/2022] [Indexed: 11/03/2022]
Abstract
Fluorescence imaging in the second near-infrared window (NIR-II) offers μm resolution blood vessel information noninvasively, which is crucial for the diagnosis and surgery treatment of some blood vessel-related diseases. However, only a few blood vessel segmentation algorithms have been done for the NIR-II images so far. Here, we proposed a vessel segmentation algorithm that used multi-scale enhancement and fractional differential to enhance capillaries, and then segmented vessels based on the blood vessels' tubular characteristics. Experimental results showed that this method could effectively suppress the point and lump tissue noise influence during vascular segmentation. The accuracy of vessel identification by other algorithms dropped below 30%, while our algorithm still achieved an accuracy of around 50% in deep vessel segmentation experiments with the 6.5 mm Intralipid. So it had the advantage of accurately detecting deep and dim blood capillaries. Meanwhile, the vascular density quantization algorithm had been successfully applied to the mice's ischemic stroke evaluations for the first time. In addition, this algorithm can provide the quantified vessel features under physiological or pathological conditions, which could be used to accurately evaluate the stroke drugs' therapeutic effect in the future.
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Affiliation(s)
- Yifan Hao
- Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai, 200083, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Aiyan Ji
- Molecular Imaging Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.
| | - Rongrong Xing
- Shanghai Research Center for Modernization of Traditional Chinese Medicine, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.
| | - Wenqing Zhu
- Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai, 200083, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Baohong Jiang
- Shanghai Research Center for Modernization of Traditional Chinese Medicine, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.
| | - Yi Jian
- Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai, 200083, China.
| | - Hao Chen
- Molecular Imaging Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.
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Han T, Ai D, Wang Y, Bian Y, An R, Fan J, Song H, Xie H, Yang J. Recursive Centerline- and Direction-Aware Joint Learning Network with Ensemble Strategy for Vessel Segmentation in X-ray Angiography Images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 220:106787. [PMID: 35436660 DOI: 10.1016/j.cmpb.2022.106787] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 03/05/2022] [Accepted: 03/17/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND OBJECTIVE Automatic vessel segmentation from X-ray angiography images is an important research topic for the diagnosis and treatment of cardiovascular disease. The main challenge is how to extract continuous and completed vessel structures from XRA images with poor quality and high complexity. Most existing methods predominantly focus on pixel-wise segmentation and overlook the geometric features, resulting in breaking and absence in segmentation results. To improve the completeness and accuracy of vessel segmentation, we propose a recursive joint learning network embedded with geometric features. METHODS The network joins the centerline- and direction-aware auxiliary tasks with the primary task of segmentation, which guides the network to explore the geometric features of vessel connectivity. Moreover, the recursive learning strategy is designed by passing the previous segmentation result into the same network iteratively to improve segmentation. To further enhance connectivity, we present a complementary-task ensemble strategy by fusing the outputs of the three tasks for the final segmentation result with majority voting. RESULTS To validate the effectiveness of our method, we conduct qualitative and quantitative experiments on the XRA images of the coronary artery and aorta including aortic arch, thoracic aorta, and abdominal aorta. Our method achieves F1 scores of 85.61±3.48% for the coronary artery, 89.02±2.89% for the aortic arch, 88.22±3.33% for the thoracic aorta, and 83.12±4.61% for the abdominal aorta. CONCLUSIONS Compared with six state-of-the-art methods, our method shows the most complete and accurate vessel segmentation results.
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Affiliation(s)
- Tao Han
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China
| | - Danni Ai
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China.
| | - Yining Wang
- Department of Radiology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China.
| | - Yonglin Bian
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China
| | - Ruirui An
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China
| | - Jingfan Fan
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China
| | - Hong Song
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China
| | - Hongzhi Xie
- Department of Radiology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China
| | - Jian Yang
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing, 100081, China
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11
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Tao X, Dang H, Zhou X, Xu X, Xiong D. A Lightweight Network for Accurate Coronary Artery Segmentation Using X-Ray Angiograms. Front Public Health 2022; 10:892418. [PMID: 35692314 PMCID: PMC9174536 DOI: 10.3389/fpubh.2022.892418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 04/04/2022] [Indexed: 11/28/2022] Open
Abstract
An accurate and automated segmentation of coronary arteries in X-ray angiograms is essential for cardiologists to diagnose coronary artery disease in clinics. The existing deep learning-based coronary arteries segmentation models focus on using complex networks to improve the accuracy of segmentation while ignoring the computational cost. However, performing such segmentation networks requires a high-performance device with a powerful GPU and a high bandwidth memory. To address this issue, in this study, a lightweight deep learning network is developed for a better balance between computational cost and segmentation accuracy. We have made two efforts in designing the network. On the one hand, we adopt bottleneck residual blocks to replace the internal components in the encoder and decoder of the traditional U-Net to make the network more lightweight. On the other hand, we embed the two attention modules to model long-range dependencies in spatial and channel dimensions for the accuracy of segmentation. In addition, we employ Top-hat transforms and contrast-limited adaptive histogram equalization (CLAHE) as the pre-processing strategy to enhance the coronary arteries to further improve the accuracy. Experimental evaluations conducted on the coronary angiograms dataset show that the proposed lightweight network performs well for accurate coronary artery segmentation, achieving the sensitivity, specificity, accuracy, and area under the curve (AUC) of 0.8770, 0.9789, 0.9729, and 0.9910, respectively. It is noteworthy that the proposed network contains only 0.75 M of parameters, which achieves the best performance by the comparative experiments with popular segmentation networks (such as U-Net with 31.04 M of parameters). Experimental results demonstrate that our network can achieve better performance with an extremely low number of parameters. Furthermore, the generalization experiments indicate that our network can accurately segment coronary angiograms from other coronary angiograms' databases, which demonstrates the strong generalization and robustness of our network.
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Affiliation(s)
- Xingxiang Tao
- School of Modern Posts/Automation, Beijing University of Posts and Telecommunications, Beijing, China
| | - Hao Dang
- School of Information Technology, Henan University of Chinese Medicine, Zhengzhou, China
| | - Xiaoguang Zhou
- School of Modern Posts/Automation, Beijing University of Posts and Telecommunications, Beijing, China
| | - Xiangdong Xu
- Department of Cardiology, Jiading District Central Hospital Affiliated Shanghai University of Medical and Health Sciences, Shanghai, China
| | - Danqun Xiong
- Department of Cardiology, Jiading District Central Hospital Affiliated Shanghai University of Medical and Health Sciences, Shanghai, China
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12
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Molenaar MA, Selder JL, Nicolas J, Claessen BE, Mehran R, Bescós JO, Schuuring MJ, Bouma BJ, Verouden NJ, Chamuleau SAJ. Current State and Future Perspectives of Artificial Intelligence for Automated Coronary Angiography Imaging Analysis in Patients with Ischemic Heart Disease. Curr Cardiol Rep 2022; 24:365-376. [PMID: 35347566 PMCID: PMC8979928 DOI: 10.1007/s11886-022-01655-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/03/2022] [Indexed: 12/17/2022]
Abstract
PURPOSE OF REVIEW Artificial intelligence (AI) applications in (interventional) cardiology continue to emerge. This review summarizes the current state and future perspectives of AI for automated imaging analysis in invasive coronary angiography (ICA). RECENT FINDINGS Recently, 12 studies on AI for automated imaging analysis In ICA have been published. In these studies, machine learning (ML) models have been developed for frame selection, segmentation, lesion assessment, and functional assessment of coronary flow. These ML models have been developed on monocenter datasets (in range 31-14,509 patients) and showed moderate to good performance. However, only three ML models were externally validated. Given the current pace of AI developments for the analysis of ICA, less-invasive, objective, and automated diagnosis of CAD can be expected in the near future. Further research on this technology in the catheterization laboratory may assist and improve treatment allocation, risk stratification, and cath lab logistics by integrating ICA analysis with other clinical characteristics.
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Affiliation(s)
- Mitchel A Molenaar
- Amsterdam University Medical Centers-Location VU Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands.
- Amsterdam University Medical Centers-Location Academic Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands.
| | - Jasper L Selder
- Amsterdam University Medical Centers-Location VU Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
| | - Johny Nicolas
- The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY, 10029-6574, USA
| | - Bimmer E Claessen
- Amsterdam University Medical Centers-Location VU Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
| | - Roxana Mehran
- The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY, 10029-6574, USA
| | | | - Mark J Schuuring
- Amsterdam University Medical Centers-Location Academic Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
| | - Berto J Bouma
- Amsterdam University Medical Centers-Location Academic Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
| | - Niels J Verouden
- Amsterdam University Medical Centers-Location VU Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
| | - Steven A J Chamuleau
- Amsterdam University Medical Centers-Location VU Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
- Amsterdam University Medical Centers-Location Academic Medical Center, Department of Cardiology, University of Amsterdam, Amsterdam, The Netherlands
- Amsterdam Cardiovascular Sciences, Amsterdam University Medical Centers-Location Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands
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13
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Gao Z, Wang L, Soroushmehr R, Wood A, Gryak J, Nallamothu B, Najarian K. Vessel segmentation for X-ray coronary angiography using ensemble methods with deep learning and filter-based features. BMC Med Imaging 2022; 22:10. [PMID: 35045816 PMCID: PMC8767756 DOI: 10.1186/s12880-022-00734-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 01/04/2022] [Indexed: 11/25/2022] Open
Abstract
BACKGROUND Automated segmentation of coronary arteries is a crucial step for computer-aided coronary artery disease (CAD) diagnosis and treatment planning. Correct delineation of the coronary artery is challenging in X-ray coronary angiography (XCA) due to the low signal-to-noise ratio and confounding background structures. METHODS A novel ensemble framework for coronary artery segmentation in XCA images is proposed, which utilizes deep learning and filter-based features to construct models using the gradient boosting decision tree (GBDT) and deep forest classifiers. The proposed method was trained and tested on 130 XCA images. For each pixel of interest in the XCA images, a 37-dimensional feature vector was constructed based on (1) the statistics of multi-scale filtering responses in the morphological, spatial, and frequency domains; and (2) the feature maps obtained from trained deep neural networks. The performance of these models was compared with those of common deep neural networks on metrics including precision, sensitivity, specificity, F1 score, AUROC (the area under the receiver operating characteristic curve), and IoU (intersection over union). RESULTS With hybrid under-sampling methods, the best performing GBDT model achieved a mean F1 score of 0.874, AUROC of 0.947, sensitivity of 0.902, and specificity of 0.992; while the best performing deep forest model obtained a mean F1 score of 0.867, AUROC of 0.95, sensitivity of 0.867, and specificity of 0.993. Compared with the evaluated deep neural networks, both models had better or comparable performance for all evaluated metrics with lower standard deviations over the test images. CONCLUSIONS The proposed feature-based ensemble method outperformed common deep convolutional neural networks in most performance metrics while yielding more consistent results. Such a method can be used to facilitate the assessment of stenosis and improve the quality of care in patients with CAD.
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Affiliation(s)
- Zijun Gao
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.
| | - Lu Wang
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
| | - Reza Soroushmehr
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
- Michigan Center for Integrative Research in Critical Care (MCIRCC), University of Michigan, Ann Arbor, USA
| | - Alexander Wood
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
| | - Jonathan Gryak
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
| | - Brahmajee Nallamothu
- Department of Internal Medicine, University of Michigan, Ann Arbor, USA
- Division of Cardiovascular Diseases, University of Michigan, Ann Arbor, USA
| | - Kayvan Najarian
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
- Department of Emergency Medicine, University of Michigan, Ann Arbor, USA
- Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, USA
- Michigan Center for Integrative Research in Critical Care (MCIRCC), University of Michigan, Ann Arbor, USA
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14
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Blood Vessel Segmentation of Fundus Retinal Images Based on Improved Frangi and Mathematical Morphology. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2021; 2021:4761517. [PMID: 34122614 PMCID: PMC8172282 DOI: 10.1155/2021/4761517] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 05/09/2021] [Accepted: 05/17/2021] [Indexed: 11/25/2022]
Abstract
An improved blood vessel segmentation algorithm on the basis of traditional Frangi filtering and the mathematical morphological method was proposed to solve the low accuracy of automatic blood vessel segmentation of fundus retinal images and high complexity of algorithms. First, a global enhanced image was generated by using the contrast-limited adaptive histogram equalization algorithm of the retinal image. An improved Frangi Hessian model was constructed by introducing the scale equivalence factor and eigenvector direction angle of the Hessian matrix into the traditional Frangi filtering algorithm to enhance blood vessels of the global enhanced image. Next, noise interferences surrounding small blood vessels were eliminated through the improved mathematical morphological method. Then, blood vessels were segmented using the Otsu threshold method. The improved algorithm was tested by the public DRIVE and STARE data sets. According to the test results, the average segmentation accuracy, sensitivity, and specificity of retinal images in DRIVE and STARE are 95.54%, 69.42%, and 98.02% and 94.92%, 70.19%, and 97.71%, respectively. The improved algorithm achieved high average segmentation accuracy and low complexity while promising segmentation sensitivity. This improved algorithm can segment retinal vessels more accurately than other algorithms.
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15
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Automatic Segmentation of Coronary Arteries in X-ray Angiograms using Multiscale Analysis and Artificial Neural Networks. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9245507] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
This paper presents a novel method for the automatic segmentation of coronary arteries in X-ray angiograms, based on multiscale analysis and neural networks. The multiscale analysis is performed by using Gaussian filters in the spatial domain and Gabor filters in the frequency domain, which are used as inputs by a multilayer perceptron (MLP) for the enhancement of vessel-like structures. The optimal design of the MLP is selected following a statistical comparative analysis, using a training set of 100 angiograms, and the area under the ROC curve ( A z ) for assessment of the detection performance. The detection results of the proposed method are compared with eleven state-of-the-art blood vessel enhancement methods, obtaining the highest performance of A z = 0.9775 , with a test set of 30 angiograms. The database of 130 X-ray coronary angiograms has been outlined by a specialist and approved by a medical ethics committee. On the other hand, the vessel extraction technique was selected from fourteen binary classification algorithms applied to the multiscale filter response. Finally, the proposed segmentation method is compared with twelve state-of-the-art vessel segmentation methods in terms of six binary evaluation metrics, where the proposed method provided the most accurate coronary arteries segmentation with a classification rate of 0.9698 and Dice coefficient of 0.6857 , using the test set of angiograms. In addition to the experimental results, the performance in the detection and segmentation steps of the proposed method have also shown that it can be highly suitable for systems that perform computer-aided diagnosis in X-ray imaging.
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16
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Yang S, Kweon J, Roh JH, Lee JH, Kang H, Park LJ, Kim DJ, Yang H, Hur J, Kang DY, Lee PH, Ahn JM, Kang SJ, Park DW, Lee SW, Kim YH, Lee CW, Park SW, Park SJ. Deep learning segmentation of major vessels in X-ray coronary angiography. Sci Rep 2019; 9:16897. [PMID: 31729445 PMCID: PMC6858336 DOI: 10.1038/s41598-019-53254-7] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 10/25/2019] [Indexed: 11/17/2022] Open
Abstract
X-ray coronary angiography is a primary imaging technique for diagnosing coronary diseases. Although quantitative coronary angiography (QCA) provides morphological information of coronary arteries with objective quantitative measures, considerable training is required to identify the target vessels and understand the tree structure of coronary arteries. Despite the use of computer-aided tools, such as the edge-detection method, manual correction is necessary for accurate segmentation of coronary vessels. In the present study, we proposed a robust method for major vessel segmentation using deep learning models with fully convolutional networks. When angiographic images of 3302 diseased major vessels from 2042 patients were tested, deep learning networks accurately identified and segmented the major vessels in X-ray coronary angiography. The average F1 score reached 0.917, and 93.7% of the images exhibited a high F1 score > 0.8. The most narrowed region at the stenosis was distinctly captured with high connectivity. Robust predictability was validated for the external dataset with different image characteristics. For major vessel segmentation, our approach demonstrated that prediction could be completed in real time with minimal image preprocessing. By applying deep learning segmentation, QCA analysis could be further automated, thereby facilitating the use of QCA-based diagnostic methods.
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Affiliation(s)
- Su Yang
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Jihoon Kweon
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.
- Biomedical Engineering Research Center, Asan Medical Center, Seoul, Korea.
| | - Jae-Hyung Roh
- Department of Cardiology in Internal Medicine, School of Medicine, Chungnam National University, Chungnam National University Hospital, Daejeon, Korea
| | - Jae-Hwan Lee
- Department of Cardiology in Internal Medicine, School of Medicine, Chungnam National University, Chungnam National University Hospital, Daejeon, Korea
| | - Heejun Kang
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Lae-Jeong Park
- Department of Electronic Engineering, Gangneung-Wonju National University, Gangneung, Korea
| | - Dong Jun Kim
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Hyeonkyeong Yang
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Jaehee Hur
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Do-Yoon Kang
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Pil Hyung Lee
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Jung-Min Ahn
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Soo-Jin Kang
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Duk-Woo Park
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Seung-Whan Lee
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Young-Hak Kim
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.
| | - Cheol Whan Lee
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Seong-Wook Park
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
| | - Seung-Jung Park
- Division of Cardiology, Department of Internal Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
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Computer aided detection of deep inferior epigastric perforators in computed tomography angiography scans. Comput Med Imaging Graph 2019; 77:101648. [PMID: 31476532 DOI: 10.1016/j.compmedimag.2019.101648] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Revised: 08/09/2019] [Accepted: 08/12/2019] [Indexed: 12/09/2022]
Abstract
The deep inferior epigastric artery perforator (DIEAP) flap is the most common free flap used for breast reconstruction after a mastectomy. It makes use of the skin and fat of the lower abdomen to build a new breast mound either at the same time of the mastectomy or in a second surgery. This operation requires preoperative imaging studies to evaluate the branches - the perforators - that irrigate the tissue that will be used to reconstruct the breast mound. These branches will support tissue viability after the microsurgical ligation of the inferior epigastric vessels to the receptor vessels in the thorax. Usually through a computed tomography angiography (CTA), each perforator is manually identified and characterized by the imaging team, who will subsequently draw a map for the identification of the best vascular support for the reconstruction. In the current work we propose a semi-automatic methodology that aims at reducing the time and subjectivity inherent to the manual annotation. In 21 CTAs from patients proposed for breast reconstruction with DIEAP flaps, the subcutaneous region of each perforator was extracted, by means of a tracking procedure, whereas the intramuscular portion was detected through a minimum cost approach. Both were subsequently compared with the radiologist manual annotation. Results showed that the semi-automatic procedure was able to correctly detect the course of the DIEAPs with a minimum error (average error of 0.64 and 0.50 mm regarding the extraction of subcutaneous and intramuscular paths, respectively), taking little time to do so. The objective methodology is a promising tool in the automatic detection of perforators in CTA and can contribute to spare human resources and reduce subjectivity in the aforementioned task.
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18
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Vigneshwaran V, Sands GB, LeGrice IJ, Smaill BH, Smith NP. Reconstruction of coronary circulation networks: A review of methods. Microcirculation 2019; 26:e12542. [DOI: 10.1111/micc.12542] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 01/25/2019] [Accepted: 02/27/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Vibujithan Vigneshwaran
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
- Faculty of Engineering University of Auckland Auckland New Zealand
| | - Gregory B. Sands
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
| | - Ian J. LeGrice
- Department of Physiology University of Auckland Auckland New Zealand
| | - Bruce H. Smaill
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
| | - Nicolas P. Smith
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
- Faculty of Engineering University of Auckland Auckland New Zealand
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Wan T, Shang X, Yang W, Chen J, Li D, Qin Z. Automated coronary artery tree segmentation in X-ray angiography using improved Hessian based enhancement and statistical region merging. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 157:179-190. [PMID: 29477426 DOI: 10.1016/j.cmpb.2018.01.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Revised: 12/02/2017] [Accepted: 01/08/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND OBJECTIVE Coronary artery segmentation is a fundamental step for a computer-aided diagnosis system to be developed to assist cardiothoracic radiologists in detecting coronary artery diseases. Manual delineation of the vasculature becomes tedious or even impossible with a large number of images acquired in the daily life clinic. A new computerized image-based segmentation method is presented for automatically extracting coronary arteries from angiography images. METHODS A combination of a multiscale-based adaptive Hessian-based enhancement method and a statistical region merging technique provides a simple and effective way to improve the complex vessel structures as well as thin vessel delineation which often missed by other segmentation methods. The methodology was validated on 100 patients who underwent diagnostic coronary angiography. The segmentation performance was assessed via both qualitative and quantitative evaluations. RESULTS Quantitative evaluation shows that our method is able to identify coronary artery trees with an accuracy of 93% and outperforms other segmentation methods in terms of two widely used segmentation metrics of mean absolute difference and dice similarity coefficient. CONCLUSIONS The comparison to the manual segmentations from three human observers suggests that the presented automated segmentation method is potential to be used in an image-based computerized analysis system for early detection of coronary artery disease.
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Affiliation(s)
- Tao Wan
- Medical Image Analysis Lab, School of Biomedical Science and Medical Engineering, Beihang University, Beijing 100191, China.
| | - Xiaoqing Shang
- Medical Image Analysis Lab, School of Biomedical Science and Medical Engineering, Beihang University, Beijing 100191, China
| | - Weilin Yang
- School of Biomedical Science and Medical Engineering, Beihang University, Beijing 100191, China
| | - Jianhui Chen
- No. 91 Central Hospital of PLA, Henan 454003, China
| | - Deyu Li
- School of Biomedical Science and Medical Engineering, Beihang University, Beijing 100191, China
| | - Zengchang Qin
- Intelligent Computing and Machine Learning Lab, School of Automation Science and Electrical Engineering, Beihang University, Beijing 100191, China.
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20
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Cervantes-Sanchez F, Cruz-Aceves I, Hernandez-Aguirre A, Solorio-Meza S, Cordova-Fraga T, Aviña-Cervantes JG. Coronary artery segmentation in X-ray angiograms using gabor filters and differential evolution. Appl Radiat Isot 2017; 138:18-24. [PMID: 28807553 DOI: 10.1016/j.apradiso.2017.08.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Revised: 07/11/2017] [Accepted: 08/04/2017] [Indexed: 11/17/2022]
Abstract
Segmentation of coronary arteries in X-ray angiograms represents an essential task for computer-aided diagnosis, since it can help cardiologists in diagnosing and monitoring vascular abnormalities. Due to the main disadvantages of the X-ray angiograms are the nonuniform illumination, and the weak contrast between blood vessels and image background, different vessel enhancement methods have been introduced. In this paper, a novel method for blood vessel enhancement based on Gabor filters tuned using the optimization strategy of Differential evolution (DE) is proposed. Because the Gabor filters are governed by three different parameters, the optimal selection of those parameters is highly desirable in order to maximize the vessel detection rate while reducing the computational cost of the training stage. To obtain the optimal set of parameters for the Gabor filters, the area (Az) under the receiver operating characteristics curve is used as objective function. In the experimental results, the proposed method achieves an Az=0.9388 in a training set of 40 images, and for a test set of 40 images it obtains the highest performance with an Az=0.9538 compared with six state-of-the-art vessel detection methods. Finally, the proposed method achieves an accuracy of 0.9423 for vessel segmentation using the test set. In addition, the experimental results have also shown that the proposed method can be highly suitable for clinical decision support in terms of computational time and vessel segmentation performance.
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Affiliation(s)
- Fernando Cervantes-Sanchez
- Centro de Investigación en Matemáticas, A.C. (CIMAT), Jalisco S/N, Col. Valenciana, Guanajuato, Gto, Mexico.
| | - Ivan Cruz-Aceves
- CONACYT - Centro de Investigación en Matemáticas, A.C. (CIMAT), Jalisco S/N, Col. Valenciana, Guanajuato, Gto, Mexico
| | - Arturo Hernandez-Aguirre
- Centro de Investigación en Matemáticas, A.C. (CIMAT), Jalisco S/N, Col. Valenciana, Guanajuato, Gto, Mexico
| | | | - Teodoro Cordova-Fraga
- Departamento de Ingeniería Física, DCI, Universidad de Guanajuato, Leon, Gto, Mexico
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Oulhaj H, Rziza M, Amine A, Toumi H, Lespessailles E, Jennane R, El Hassouni M. Trabecular bone characterization using circular parametric models. Biomed Signal Process Control 2017. [DOI: 10.1016/j.bspc.2016.10.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Li Z, Zhang Y, Gong H, Li W, Tang X. Automatic coronary artery segmentation based on multi-domains remapping and quantile regression in angiographies. Comput Med Imaging Graph 2016; 54:55-66. [DOI: 10.1016/j.compmedimag.2016.08.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 08/08/2016] [Accepted: 08/17/2016] [Indexed: 11/29/2022]
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Ilunga-Mbuyamba E, Avina-Cervantes JG, Lindner D, Cruz-Aceves I, Arlt F, Chalopin C. Vascular Structure Identification in Intraoperative 3D Contrast-Enhanced Ultrasound Data. SENSORS (BASEL, SWITZERLAND) 2016; 16:E497. [PMID: 27070610 PMCID: PMC4851011 DOI: 10.3390/s16040497] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 03/19/2016] [Accepted: 03/31/2016] [Indexed: 11/18/2022]
Abstract
In this paper, a method of vascular structure identification in intraoperative 3D Contrast-Enhanced Ultrasound (CEUS) data is presented. Ultrasound imaging is commonly used in brain tumor surgery to investigate in real time the current status of cerebral structures. The use of an ultrasound contrast agent enables to highlight tumor tissue, but also surrounding blood vessels. However, these structures can be used as landmarks to estimate and correct the brain shift. This work proposes an alternative method for extracting small vascular segments close to the tumor as landmark. The patient image dataset involved in brain tumor operations includes preoperative contrast T1MR (cT1MR) data and 3D intraoperative contrast enhanced ultrasound data acquired before (3D-iCEUS(start) and after (3D-iCEUS(end) tumor resection. Based on rigid registration techniques, a preselected vascular segment in cT1MR is searched in 3D-iCEUS(start) and 3D-iCEUS(end) data. The method was validated by using three similarity measures (Normalized Gradient Field, Normalized Mutual Information and Normalized Cross Correlation). Tests were performed on data obtained from ten patients overcoming a brain tumor operation and it succeeded in nine cases. Despite the small size of the vascular structures, the artifacts in the ultrasound images and the brain tissue deformations, blood vessels were successfully identified.
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Affiliation(s)
- Elisee Ilunga-Mbuyamba
- Telematics (CA), Engineering Division (DICIS), University of Guanajuato, Campus Irapuato-Salamanca, Carr. Salamanca-Valle km 3.5 + 1.8, Com. Palo Blanco, Salamanca, Gto. 36885, Mexico.
| | - Juan Gabriel Avina-Cervantes
- Telematics (CA), Engineering Division (DICIS), University of Guanajuato, Campus Irapuato-Salamanca, Carr. Salamanca-Valle km 3.5 + 1.8, Com. Palo Blanco, Salamanca, Gto. 36885, Mexico.
| | - Dirk Lindner
- Department of Neurosurgery, University Hospital Leipzig, Leipzig 04103, Germany.
| | - Ivan Cruz-Aceves
- CONACYT Research-Fellow, Center for Research in Mathematics (CIMAT), A.C., Jalisco S/N, Col. Valenciana, Guanajuato, Gto. 36000, Mexico.
| | - Felix Arlt
- Department of Neurosurgery, University Hospital Leipzig, Leipzig 04103, Germany.
| | - Claire Chalopin
- Innovation Center Computer Assisted Surgery (ICCAS), University of Leipzig, Leipzig 04103, Germany.
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